Wall clock time and date at job start Tue Mar 31 2020 22:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33505 * 126.72695 * 2 1 4 4 N 1.20653 * 113.38440 * 179.97438 * 3 2 1 5 5 C 1.30834 * 112.10989 * 359.69385 * 4 3 2 6 6 C 1.48375 * 127.44645 * 180.33039 * 5 4 3 7 7 C 1.39304 * 119.72074 * 335.15116 * 6 5 4 8 8 C 1.38458 * 119.06814 * 179.97438 * 7 6 5 9 9 C 1.38732 * 118.50367 * 359.97438 * 8 7 6 10 10 C 1.38331 * 119.35793 * 359.97438 * 9 8 7 11 11 N 1.31705 * 120.88774 * 359.74167 * 10 9 8 12 12 C 1.37211 * 126.72515 * 179.97438 * 2 1 3 13 13 C 1.47299 * 128.58006 * 0.02666 * 12 2 1 14 14 O 1.21643 * 120.00210 * 90.02233 * 13 12 2 15 15 N 1.34777 * 119.99559 * 270.01927 * 13 12 2 16 16 C 1.40561 * 119.99740 * 179.72293 * 15 13 12 17 17 C 1.40662 * 126.08209 * 359.96827 * 16 15 13 18 18 N 1.30909 * 108.38452 * 179.87752 * 17 16 15 19 19 N 1.40063 * 108.41023 * 0.37871 * 18 17 16 20 20 C 1.37325 * 126.06716 * 179.73134 * 19 18 17 21 21 H 1.08001 * 119.99817 * 180.02562 * 20 19 18 22 22 C 1.38986 * 119.99940 * 0.03196 * 20 19 18 23 23 N 1.31297 * 120.00251 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99802 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46691 * 90.00199 * 24 22 20 26 26 H 1.48505 * 109.46976 * 209.99792 * 24 22 20 27 27 H 1.48498 * 109.47243 * 330.00086 * 24 22 20 28 28 C 1.35681 * 126.08419 * 180.27912 * 16 15 13 29 29 H 1.09000 * 109.46906 * 270.02162 * 1 2 3 30 30 H 1.09001 * 109.47058 * 30.02704 * 1 2 3 31 31 H 1.09001 * 109.47007 * 150.02484 * 1 2 3 32 32 H 1.08001 * 120.46180 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.74787 * 180.02562 * 8 7 6 34 34 H 1.07993 * 120.32237 * 180.02562 * 9 8 7 35 35 H 1.07993 * 119.55560 * 180.02562 * 10 9 8 36 36 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 37 37 H 1.07999 * 125.80708 * 0.02562 * 17 16 15 38 38 H 0.96990 * 120.00160 * 179.97438 * 23 22 20 39 39 H 1.08008 * 126.24984 * 359.94168 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3054 1.0700 0.0000 4 7 3.4794 0.7916 0.0005 5 6 3.6788 -0.5014 0.0074 6 6 4.9805 -1.2134 0.0169 7 6 6.1157 -0.5841 -0.4889 8 6 7.3235 -1.2608 -0.4728 9 6 7.3557 -2.5456 0.0497 10 6 6.1899 -3.1092 0.5362 11 7 5.0552 -2.4409 0.5139 12 6 2.3275 -1.0998 0.0005 13 6 1.9539 -2.5246 0.0006 14 8 1.8004 -3.1132 -1.0528 15 7 1.7821 -3.1760 1.1679 16 6 1.4199 -4.5342 1.1680 17 6 1.2039 -5.3341 0.0313 18 7 0.8859 -6.5399 0.4294 19 7 0.8777 -6.5557 1.8299 20 6 0.5860 -7.6369 2.6246 21 1 0.6088 -7.5386 3.6999 22 6 0.2614 -8.8578 2.0451 23 7 0.2333 -8.9773 0.7379 24 14 -0.1348 -10.3288 3.1262 25 1 -1.5924 -10.3572 3.4087 26 1 0.2581 -11.5780 2.4258 27 1 0.6150 -10.2207 4.4035 28 6 1.2106 -5.3053 2.2646 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 6.0544 0.4176 -0.8879 33 1 8.2205 -0.7986 -0.8576 34 1 8.2820 -3.1000 0.0770 35 1 6.2114 -4.1089 0.9441 36 1 1.9042 -2.7066 2.0079 37 1 1.2886 -5.0093 -0.9952 38 1 0.0072 -9.8294 0.3335 39 1 1.2928 -4.9879 3.2937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765342500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:52 Heat of formation + Delta-G solvation = 154.552557 kcal Electronic energy + Delta-G solvation = -28059.418857 eV Core-core repulsion = 23972.979549 eV Total energy + Delta-G solvation = -4086.439308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.96026 -40.20528 -39.79763 -38.41283 -34.40875 -34.12998 -33.69183 -33.02847 -32.65370 -30.87701 -30.19915 -28.38504 -27.56303 -25.47010 -24.69950 -23.91466 -23.36923 -21.19380 -20.78810 -20.03599 -19.35219 -17.96570 -17.77848 -17.42476 -17.03712 -16.35741 -16.06662 -15.53345 -15.37091 -15.16518 -14.59401 -14.24414 -14.11975 -13.95103 -13.50897 -13.44814 -13.38695 -13.22585 -12.90041 -12.87504 -12.68798 -12.01623 -11.66191 -11.46976 -11.39686 -11.23493 -10.94482 -10.85637 -10.52233 -10.10072 -10.06044 -9.64761 -9.56411 -9.21384 -9.12807 -8.98857 -8.76977 -8.01638 -6.64619 -6.52790 -4.19314 0.49955 1.08561 1.26678 2.01803 2.65332 2.80356 3.02037 3.06566 3.11496 3.34059 3.65381 3.70771 3.74235 3.93674 4.12562 4.44861 4.59854 4.66100 4.75087 4.81817 4.85526 4.99160 5.04682 5.05936 5.12409 5.25293 5.32292 5.46126 5.51230 5.60892 5.79811 5.85888 5.95418 6.29078 6.44136 6.50849 6.94030 6.99754 7.16013 7.27529 7.78127 7.89297 8.02491 8.22120 8.32141 8.65898 8.88536 9.41665 9.71220 10.43232 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.003092 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.322902 B = 9054.862745 C =10541.705906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.008 3.992 3 O 0.106 5.894 4 N -0.341 5.341 5 C 0.092 3.908 6 C 0.191 3.809 7 C -0.143 4.143 8 C -0.077 4.077 9 C -0.164 4.164 10 C 0.113 3.887 11 N -0.449 5.449 12 C -0.204 4.204 13 C 0.591 3.409 14 O -0.525 6.525 15 N -0.601 5.601 16 C -0.053 4.053 17 C -0.032 4.032 18 N -0.260 5.260 19 N -0.143 5.143 20 C -0.323 4.323 21 H 0.116 0.884 22 C 0.047 3.953 23 N -0.770 5.770 24 Si 0.933 3.067 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.264 1.264 28 C -0.081 4.081 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.397 0.603 37 H 0.174 0.826 38 H 0.274 0.726 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.095 16.529 1.345 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 O 0.040 5.960 4 N -0.045 5.045 5 C -0.068 4.068 6 C 0.054 3.946 7 C -0.164 4.164 8 C -0.103 4.103 9 C -0.184 4.184 10 C -0.045 4.045 11 N -0.159 5.159 12 C -0.212 4.212 13 C 0.375 3.625 14 O -0.402 6.402 15 N -0.241 5.241 16 C -0.158 4.158 17 C -0.208 4.208 18 N -0.091 5.091 19 N 0.089 4.911 20 C -0.455 4.455 21 H 0.133 0.867 22 C -0.170 4.170 23 N -0.397 5.397 24 Si 0.757 3.243 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.188 1.188 28 C -0.232 4.232 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.230 0.770 37 H 0.191 0.809 38 H 0.085 0.915 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.655 15.425 0.373 17.224 hybrid contribution 0.794 0.146 0.863 1.182 sum 8.450 15.571 1.236 17.759 Atomic orbital electron populations 1.20497 0.82723 1.05473 1.04819 1.24584 0.96058 0.84712 1.00138 1.84485 1.10871 1.33124 1.67541 1.73867 0.96084 1.15362 1.19149 1.22459 0.92586 0.88502 1.03224 1.18225 0.89016 0.90574 0.96817 1.22021 0.92585 1.01345 1.00428 1.21527 0.97758 0.94430 0.96540 1.22323 1.00366 0.96245 0.99456 1.22853 0.86921 0.99587 0.95160 1.67536 1.28782 1.05981 1.13554 1.22033 0.91424 0.95942 1.11777 1.16385 0.78753 0.83205 0.84189 1.90717 1.51488 1.66633 1.31405 1.42250 1.65508 1.09025 1.07344 1.17202 1.20470 0.83922 0.94207 1.24084 1.06805 0.91136 0.98733 1.78251 1.25194 1.17524 0.88124 1.44528 1.36876 1.05316 1.04355 1.19851 1.48693 0.86838 0.90141 0.86689 1.25623 0.95823 0.99412 0.96178 1.70217 1.34778 1.25454 1.09261 0.85851 0.79205 0.79626 0.79592 1.19625 1.20129 1.18842 1.21231 1.17509 0.87529 0.96918 0.88588 0.89155 0.88253 0.84399 0.84285 0.84238 0.81813 0.76976 0.80893 0.91526 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.32 36.01 0.37 -0.31 16 2 C 0.01 0.10 7.53 -34.68 -0.26 -0.16 16 3 O 0.11 1.33 11.05 18.62 0.21 1.54 16 4 N -0.34 -4.78 11.98 34.60 0.41 -4.37 16 5 C 0.09 1.42 7.20 -80.22 -0.58 0.85 16 6 C 0.19 2.87 6.74 -82.95 -0.56 2.31 16 7 C -0.14 -1.70 9.77 -39.10 -0.38 -2.08 16 8 C -0.08 -0.73 10.17 -39.32 -0.40 -1.13 16 9 C -0.16 -1.61 10.11 -39.36 -0.40 -2.01 16 10 C 0.11 1.46 11.18 -17.57 -0.20 1.27 16 11 N -0.45 -7.17 9.80 -9.77 -0.10 -7.27 16 12 C -0.20 -3.22 6.24 -102.69 -0.64 -3.86 16 13 C 0.59 11.32 7.07 -12.58 -0.09 11.23 16 14 O -0.53 -12.08 14.25 5.24 0.07 -12.01 16 15 N -0.60 -11.33 5.46 -11.00 -0.06 -11.39 16 16 C -0.05 -1.22 6.90 -83.85 -0.58 -1.80 16 17 C -0.03 -0.85 10.85 -17.03 -0.18 -1.04 16 18 N -0.26 -7.56 10.40 30.80 0.32 -7.24 16 19 N -0.14 -3.92 3.74 -11.41 -0.04 -3.96 16 20 C -0.32 -8.53 10.25 -14.81 -0.15 -8.68 16 21 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 22 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 23 N -0.77 -21.52 11.81 55.49 0.66 -20.87 16 24 Si 0.93 18.88 29.55 -169.99 -5.02 13.86 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 28 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.40 6.25 8.81 -40.82 -0.36 5.89 16 37 H 0.17 4.62 5.91 -52.49 -0.31 4.31 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.14 2.86 8.06 -52.48 -0.42 2.43 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -35.51 356.22 -6.11 -41.62 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.60 Total: 11.12 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -4.33 Total: -6.41 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 1.19 Total: -55.09 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.28 Total: -10.47 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.51 -6.11 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765342500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.169 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds