Wall clock time and date at job start Tue Mar 31 2020 22:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33505 * 126.72695 * 2 1 4 4 N 1.20653 * 113.38440 * 179.97438 * 3 2 1 5 5 C 1.30834 * 112.10989 * 359.69385 * 4 3 2 6 6 C 1.48375 * 127.44645 * 180.33039 * 5 4 3 7 7 C 1.39304 * 119.72074 * 335.15116 * 6 5 4 8 8 C 1.38458 * 119.06814 * 179.97438 * 7 6 5 9 9 C 1.38732 * 118.50367 * 359.97438 * 8 7 6 10 10 C 1.38331 * 119.35793 * 359.97438 * 9 8 7 11 11 N 1.31705 * 120.88774 * 359.74167 * 10 9 8 12 12 C 1.37211 * 126.72515 * 179.97438 * 2 1 3 13 13 C 1.47299 * 128.58006 * 0.02666 * 12 2 1 14 14 O 1.21643 * 120.00210 * 90.02233 * 13 12 2 15 15 N 1.34777 * 119.99559 * 270.01927 * 13 12 2 16 16 C 1.40561 * 119.99740 * 179.72293 * 15 13 12 17 17 C 1.40662 * 126.08209 * 359.96827 * 16 15 13 18 18 N 1.30909 * 108.38452 * 179.87752 * 17 16 15 19 19 N 1.40063 * 108.41023 * 0.37871 * 18 17 16 20 20 C 1.37325 * 126.06716 * 179.73134 * 19 18 17 21 21 H 1.08001 * 119.99817 * 180.02562 * 20 19 18 22 22 C 1.38986 * 119.99940 * 0.03196 * 20 19 18 23 23 N 1.31297 * 120.00251 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99802 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46691 * 90.00199 * 24 22 20 26 26 H 1.48505 * 109.46976 * 209.99792 * 24 22 20 27 27 H 1.48498 * 109.47243 * 330.00086 * 24 22 20 28 28 C 1.35681 * 126.08419 * 180.27912 * 16 15 13 29 29 H 1.09000 * 109.46906 * 270.02162 * 1 2 3 30 30 H 1.09001 * 109.47058 * 30.02704 * 1 2 3 31 31 H 1.09001 * 109.47007 * 150.02484 * 1 2 3 32 32 H 1.08001 * 120.46180 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.74787 * 180.02562 * 8 7 6 34 34 H 1.07993 * 120.32237 * 180.02562 * 9 8 7 35 35 H 1.07993 * 119.55560 * 180.02562 * 10 9 8 36 36 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 37 37 H 1.07999 * 125.80708 * 0.02562 * 17 16 15 38 38 H 0.96990 * 120.00160 * 179.97438 * 23 22 20 39 39 H 1.08008 * 126.24984 * 359.94168 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3054 1.0700 0.0000 4 7 3.4794 0.7916 0.0005 5 6 3.6788 -0.5014 0.0074 6 6 4.9805 -1.2134 0.0169 7 6 6.1157 -0.5841 -0.4889 8 6 7.3235 -1.2608 -0.4728 9 6 7.3557 -2.5456 0.0497 10 6 6.1899 -3.1092 0.5362 11 7 5.0552 -2.4409 0.5139 12 6 2.3275 -1.0998 0.0005 13 6 1.9539 -2.5246 0.0006 14 8 1.8004 -3.1132 -1.0528 15 7 1.7821 -3.1760 1.1679 16 6 1.4199 -4.5342 1.1680 17 6 1.2039 -5.3341 0.0313 18 7 0.8859 -6.5399 0.4294 19 7 0.8777 -6.5557 1.8299 20 6 0.5860 -7.6369 2.6246 21 1 0.6088 -7.5386 3.6999 22 6 0.2614 -8.8578 2.0451 23 7 0.2333 -8.9773 0.7379 24 14 -0.1348 -10.3288 3.1262 25 1 -1.5924 -10.3572 3.4087 26 1 0.2581 -11.5780 2.4258 27 1 0.6150 -10.2207 4.4035 28 6 1.2106 -5.3053 2.2646 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 6.0544 0.4176 -0.8879 33 1 8.2205 -0.7986 -0.8576 34 1 8.2820 -3.1000 0.0770 35 1 6.2114 -4.1089 0.9441 36 1 1.9042 -2.7066 2.0079 37 1 1.2886 -5.0093 -0.9952 38 1 0.0072 -9.8294 0.3335 39 1 1.2928 -4.9879 3.2937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765342500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:51 Heat of formation + Delta-G solvation = 130.034339 kcal Electronic energy + Delta-G solvation = -28060.482047 eV Core-core repulsion = 23972.979549 eV Total energy + Delta-G solvation = -4087.502497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.04661 -41.68940 -41.10993 -40.12317 -35.92529 -35.51233 -34.95878 -34.60410 -33.55227 -32.22936 -31.81117 -29.88101 -28.87099 -27.07205 -26.08921 -25.00059 -24.41632 -22.88437 -22.24553 -21.40741 -21.11390 -19.46998 -18.92820 -18.79019 -18.25635 -17.45876 -17.32980 -16.97195 -16.89881 -16.55269 -16.03606 -15.79898 -15.28817 -15.15514 -15.04486 -14.86837 -14.72053 -14.29124 -14.09157 -14.00665 -13.62100 -13.46767 -13.30510 -12.90212 -12.84975 -12.84079 -12.48478 -12.07720 -11.90178 -11.85067 -11.10549 -11.00518 -10.96221 -10.79089 -10.55710 -10.48040 -10.07637 -9.93107 -8.52691 -8.44891 -6.22026 -0.45426 0.19185 0.23280 0.95765 1.12090 1.41382 1.42675 1.59127 1.68327 1.85575 2.08491 2.25114 2.46071 2.52233 2.73754 2.93348 3.10860 3.14055 3.65020 3.81141 3.82217 3.95078 3.98899 4.06218 4.17990 4.31238 4.45022 4.54354 4.61759 4.62385 4.68700 4.71391 5.01998 5.03754 5.08474 5.09341 5.11702 5.30243 5.43004 5.60503 5.97241 6.31154 6.65977 6.74586 6.83356 6.97766 7.28312 7.47971 7.69420 8.54470 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.003092 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.322902 B = 9054.862745 C =10541.705906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.041 3.959 3 O 0.119 5.881 4 N -0.344 5.344 5 C 0.086 3.914 6 C 0.154 3.846 7 C -0.144 4.144 8 C -0.068 4.068 9 C -0.147 4.147 10 C 0.086 3.914 11 N -0.491 5.491 12 C -0.246 4.246 13 C 0.603 3.397 14 O -0.569 6.569 15 N -0.592 5.592 16 C -0.037 4.037 17 C -0.056 4.056 18 N -0.307 5.307 19 N -0.165 5.165 20 C -0.353 4.353 21 H 0.141 0.859 22 C -0.005 4.005 23 N -0.824 5.824 24 Si 1.019 2.981 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.245 1.245 28 C -0.077 4.077 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.166 0.834 36 H 0.414 0.586 37 H 0.163 0.837 38 H 0.276 0.724 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.113 18.104 3.181 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.022 4.022 3 O 0.053 5.947 4 N -0.047 5.047 5 C -0.074 4.074 6 C 0.018 3.982 7 C -0.165 4.165 8 C -0.094 4.094 9 C -0.167 4.167 10 C -0.072 4.072 11 N -0.202 5.202 12 C -0.254 4.254 13 C 0.389 3.611 14 O -0.449 6.449 15 N -0.234 5.234 16 C -0.143 4.143 17 C -0.231 4.231 18 N -0.139 5.139 19 N 0.066 4.934 20 C -0.484 4.484 21 H 0.158 0.842 22 C -0.217 4.217 23 N -0.452 5.452 24 Si 0.838 3.162 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.168 1.168 28 C -0.227 4.227 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.168 0.832 33 H 0.199 0.801 34 H 0.194 0.806 35 H 0.183 0.817 36 H 0.251 0.749 37 H 0.180 0.820 38 H 0.086 0.914 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.691 17.071 2.239 19.287 hybrid contribution 0.556 -0.179 0.254 0.637 sum 9.247 16.892 2.493 19.418 Atomic orbital electron populations 1.20762 0.79921 1.06330 1.06684 1.25105 0.97170 0.83472 0.96462 1.84487 1.10563 1.32733 1.66965 1.73839 0.96613 1.14604 1.19625 1.22671 0.92783 0.88829 1.03139 1.18459 0.89919 0.90950 0.98921 1.22266 0.92588 1.01925 0.99689 1.22031 0.98241 0.94008 0.95088 1.22692 1.00460 0.96434 0.97130 1.23131 0.87646 1.00006 0.96418 1.67404 1.30639 1.06980 1.15166 1.21677 0.92908 0.94616 1.16232 1.16730 0.76832 0.84344 0.83225 1.90689 1.53055 1.68190 1.32974 1.42153 1.65348 1.07399 1.08460 1.17225 1.18544 0.85530 0.92989 1.24060 1.08143 0.91641 0.99266 1.78154 1.26953 1.18880 0.89910 1.44815 1.37923 1.06779 1.03865 1.20618 1.49208 0.87242 0.91356 0.84194 1.26864 0.94736 1.02585 0.97511 1.70399 1.36533 1.26459 1.11807 0.84600 0.79231 0.74574 0.77836 1.18859 1.20260 1.16761 1.21899 1.15749 0.86341 0.98706 0.86005 0.85784 0.89810 0.83151 0.80094 0.80562 0.81658 0.74942 0.82038 0.91421 0.79749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.32 71.24 0.74 -0.49 16 2 C 0.04 0.97 7.53 25.44 0.19 1.16 16 3 O 0.12 2.77 11.05 76.88 0.85 3.62 16 4 N -0.34 -9.30 11.98 -45.02 -0.54 -9.84 16 5 C 0.09 2.65 7.20 44.52 0.32 2.97 16 6 C 0.15 4.66 6.74 41.98 0.28 4.94 16 7 C -0.14 -3.23 9.77 22.58 0.22 -3.01 16 8 C -0.07 -1.11 10.17 22.44 0.23 -0.88 16 9 C -0.15 -2.58 10.11 22.41 0.23 -2.35 16 10 C 0.09 2.23 11.18 84.73 0.95 3.18 16 11 N -0.49 -16.12 9.80 -184.84 -1.81 -17.93 16 12 C -0.25 -7.83 6.24 -18.61 -0.12 -7.95 16 13 C 0.60 23.79 7.07 86.63 0.61 24.40 16 14 O -0.57 -27.59 14.25 -4.17 -0.06 -27.64 16 15 N -0.59 -22.60 5.46 -306.95 -1.68 -24.28 16 16 C -0.04 -1.75 6.90 37.74 0.26 -1.49 16 17 C -0.06 -3.14 10.85 85.42 0.93 -2.21 16 18 N -0.31 -18.73 10.40 -56.46 -0.59 -19.32 16 19 N -0.16 -9.22 3.74 -190.00 -0.71 -9.93 16 20 C -0.35 -18.74 10.25 84.01 0.86 -17.87 16 21 H 0.14 6.42 7.83 -2.91 -0.02 6.40 16 22 C -0.01 -0.28 5.50 84.95 0.47 0.19 16 23 N -0.82 -47.73 11.81 21.66 0.26 -47.47 16 24 Si 1.02 38.53 29.55 68.60 2.03 40.56 16 25 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 26 H -0.28 -10.42 7.11 99.48 0.71 -9.72 16 27 H -0.24 -8.38 7.11 99.48 0.71 -7.67 16 28 C -0.08 -3.61 11.49 83.37 0.96 -2.65 16 29 H 0.12 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 35 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.41 12.86 8.81 -92.71 -0.82 12.04 16 37 H 0.16 9.29 5.91 -2.91 -0.02 9.27 16 38 H 0.28 14.70 8.31 -92.72 -0.77 13.93 16 39 H 0.19 6.94 8.06 -2.91 -0.02 6.91 16 Total: -1.00 -83.40 356.22 5.19 -78.20 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.32 Total: 36.09 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 7.12 Total: -2.06 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -5.07 Total: -128.77 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.79 Total: -24.03 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -83.40 5.19 -78.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765342500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.239 kcal (2) G-P(sol) polarization free energy of solvation -83.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds