Wall clock time and date at job start Tue Mar 31 2020 22:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99950 * 2 1 4 4 H 1.48498 * 109.46886 * 269.99847 * 3 2 1 5 5 H 1.48504 * 109.47317 * 29.99467 * 3 2 1 6 6 H 1.48498 * 109.47104 * 149.99549 * 3 2 1 7 7 C 1.37872 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47697 * 179.97438 * 9 7 2 11 11 O 1.45190 * 109.47792 * 179.97438 * 10 9 7 12 12 C 1.34225 * 117.00496 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00070 * 180.02562 * 12 11 10 15 15 H 1.09000 * 110.85475 * 303.78282 * 14 12 11 16 16 C 1.54624 * 111.00364 * 67.60579 * 14 12 11 17 17 C 1.51281 * 104.20087 * 142.92945 * 16 14 12 18 18 O 1.21292 * 124.94505 * 164.01185 * 17 16 14 19 19 N 1.34424 * 110.11017 * 343.74403 * 17 16 14 20 20 C 1.40173 * 124.34520 * 179.57000 * 19 17 16 21 21 C 1.38979 * 120.08428 * 269.75094 * 20 19 17 22 22 F 1.35096 * 120.04794 * 359.97438 * 21 20 19 23 23 C 1.38354 * 119.91045 * 179.76703 * 21 20 19 24 24 C 1.38259 * 120.08457 * 0.48756 * 23 21 20 25 25 C 1.38266 * 120.17446 * 359.76624 * 24 23 21 26 26 C 1.38347 * 120.08328 * 0.02562 * 25 24 23 27 27 F 1.35105 * 120.04330 * 179.97438 * 26 25 24 28 28 C 1.46764 * 111.30306 * 359.59326 * 19 17 16 29 29 H 0.96998 * 119.99836 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47386 * 59.99358 * 9 7 2 31 31 H 1.09005 * 109.47484 * 299.99747 * 9 7 2 32 32 H 1.09002 * 109.47063 * 59.99360 * 10 9 7 33 33 H 1.09007 * 109.46904 * 300.00034 * 10 9 7 34 34 H 1.09000 * 110.48926 * 24.24758 * 16 14 12 35 35 H 1.09001 * 110.48194 * 261.61114 * 16 14 12 36 36 H 1.08003 * 119.95375 * 180.23025 * 23 21 20 37 37 H 1.07997 * 119.91650 * 179.74702 * 24 23 21 38 38 H 1.08004 * 119.96147 * 179.97438 * 25 24 23 39 39 H 1.09002 * 110.24057 * 136.01578 * 28 19 17 40 40 H 1.08999 * 110.24100 * 257.92847 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2504 -6.0452 0.0018 13 8 3.4570 -5.9820 0.0013 14 6 1.5661 -7.3880 0.0018 15 1 0.8850 -7.4764 0.8482 16 6 0.8251 -7.6325 -1.3331 17 6 1.0219 -9.1082 -1.6019 18 8 0.3783 -9.7616 -2.3957 19 7 2.0177 -9.5885 -0.8373 20 6 2.4442 -10.9238 -0.8413 21 6 1.8691 -11.8414 0.0298 22 9 0.8980 -11.4479 0.8825 23 6 2.2895 -13.1595 0.0194 24 6 3.2873 -13.5620 -0.8489 25 6 3.8655 -12.6508 -1.7133 26 6 3.4476 -11.3320 -1.7120 27 9 4.0135 -10.4422 -2.5566 28 6 2.6005 -8.5355 0.0026 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8720 -3.6043 0.8905 33 1 2.8719 -3.6044 -0.8895 34 1 1.2692 -7.0369 -2.1306 35 1 -0.2351 -7.4018 -1.2286 36 1 1.8404 -13.8740 0.6935 37 1 3.6162 -14.5906 -0.8518 38 1 4.6450 -12.9688 -2.3899 39 1 2.7544 -8.9040 1.0168 40 1 3.5448 -8.1942 -0.4217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771152707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:58 Heat of formation + Delta-G solvation = -179.926210 kcal Electronic energy + Delta-G solvation = -28561.654828 eV Core-core repulsion = 23977.729495 eV Total energy + Delta-G solvation = -4583.925333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.44665 -49.40091 -41.33879 -39.95378 -38.96403 -36.92714 -36.10966 -33.80334 -33.35295 -30.88900 -30.47005 -29.67340 -28.12370 -25.57139 -24.25290 -23.44160 -23.27117 -21.11585 -20.60643 -20.18492 -18.67898 -18.16679 -17.93530 -17.54556 -16.79765 -16.47669 -16.11539 -16.06880 -15.98551 -15.72813 -15.71881 -15.54391 -14.99227 -14.83405 -14.51000 -14.18365 -14.08098 -13.63424 -13.26036 -13.07503 -12.84908 -12.52335 -12.49937 -12.41840 -12.30472 -11.94939 -11.66077 -11.31024 -11.10822 -10.82198 -10.77240 -10.54348 -10.24555 -9.74787 -9.70566 -9.44242 -9.42527 -9.34301 -9.30653 -8.48253 -6.14194 -4.18951 0.29757 0.41419 2.14760 2.22827 2.31661 2.72504 2.94068 3.26245 3.27157 3.32645 3.36316 3.85453 3.86951 4.10329 4.14820 4.27315 4.35192 4.48289 4.54269 4.62732 4.81563 5.06971 5.11943 5.22405 5.22529 5.29736 5.31609 5.42680 5.48870 5.57021 5.57676 5.86749 5.97978 6.00085 6.31090 6.51459 6.55318 6.82065 7.49156 7.56202 7.72714 7.80286 8.01397 8.18719 8.86512 9.45814 10.97176 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026948 B = 0.002093 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.785799 B =13376.764207 C =13645.110013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.349 6.349 12 C 0.469 3.531 13 O -0.509 6.509 14 C -0.096 4.096 15 H 0.133 0.867 16 C -0.136 4.136 17 C 0.530 3.470 18 O -0.511 6.511 19 N -0.580 5.580 20 C 0.074 3.926 21 C 0.139 3.861 22 F -0.121 7.121 23 C -0.160 4.160 24 C -0.054 4.054 25 C -0.160 4.160 26 C 0.141 3.859 27 F -0.120 7.120 28 C 0.117 3.883 29 H 0.264 0.736 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.092 0.908 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 -29.236 0.477 29.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.265 6.265 12 C 0.311 3.689 13 O -0.399 6.399 14 C -0.116 4.116 15 H 0.150 0.850 16 C -0.176 4.176 17 C 0.319 3.681 18 O -0.384 6.384 19 N -0.312 5.312 20 C -0.019 4.019 21 C 0.118 3.882 22 F -0.099 7.099 23 C -0.180 4.180 24 C -0.072 4.072 25 C -0.179 4.179 26 C 0.120 3.880 27 F -0.098 7.098 28 C -0.004 4.004 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.111 0.889 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.446 -29.352 0.042 29.853 hybrid contribution 0.526 1.295 0.093 1.401 sum 5.972 -28.058 0.135 28.686 Atomic orbital electron populations 1.69970 1.06084 1.27061 1.49607 1.24985 0.94931 0.99420 0.94820 0.86465 0.79749 0.82790 0.78271 1.20459 1.21037 1.19722 1.20956 0.93169 0.90062 1.52397 0.92245 1.19182 0.94177 0.88943 0.98988 1.23736 0.96462 0.78411 1.01162 1.86525 1.42222 1.15663 1.82088 1.22750 0.86229 0.86840 0.73086 1.90658 1.15482 1.88064 1.45649 1.21833 0.98336 0.89967 1.01437 0.84956 1.22292 1.04838 0.93140 0.97334 1.21048 0.78156 0.89869 0.79038 1.90756 1.48338 1.64586 1.34757 1.45486 1.36367 1.05840 1.43475 1.17298 0.99458 0.84875 1.00234 1.17699 0.88159 0.92543 0.89757 1.91554 1.59517 1.91443 1.67411 1.21206 1.00208 0.93897 1.02650 1.20959 0.93546 1.00116 0.92578 1.21221 1.03312 0.90843 1.02550 1.17737 0.92979 0.87651 0.89656 1.91572 1.82820 1.67445 1.67972 1.22190 0.96925 0.85081 0.96195 0.92657 0.95266 0.95268 0.92073 0.92088 0.86388 0.85618 0.83307 0.83313 0.83295 0.88942 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.50 9.11 -34.45 -0.31 -14.81 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.61 5.35 -27.89 -0.15 0.46 16 10 C 0.07 1.56 5.40 37.16 0.20 1.76 16 11 O -0.35 -6.34 10.22 -39.24 -0.40 -6.74 16 12 C 0.47 7.16 7.19 36.01 0.26 7.42 16 13 O -0.51 -8.93 15.26 -18.75 -0.29 -9.21 16 14 C -0.10 -1.06 3.65 -90.14 -0.33 -1.39 16 15 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.14 -1.53 6.41 -26.74 -0.17 -1.70 16 17 C 0.53 7.10 7.99 -10.86 -0.09 7.01 16 18 O -0.51 -8.54 17.71 5.55 0.10 -8.44 16 19 N -0.58 -6.86 2.62 -112.12 -0.29 -7.15 16 20 C 0.07 0.81 5.40 -83.49 -0.45 0.35 16 21 C 0.14 1.31 7.31 -39.26 -0.29 1.02 16 22 F -0.12 -1.28 17.08 2.25 0.04 -1.24 16 23 C -0.16 -0.98 10.02 -39.53 -0.40 -1.38 16 24 C -0.05 -0.25 10.04 -39.56 -0.40 -0.65 16 25 C -0.16 -1.03 10.02 -39.53 -0.40 -1.42 16 26 C 0.14 1.40 7.31 -39.27 -0.29 1.11 16 27 F -0.12 -1.41 17.08 2.25 0.04 -1.37 16 28 C 0.12 1.23 6.64 -3.12 -0.02 1.21 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.27 8.13 -51.93 -0.42 0.84 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.12 1.34 7.89 -51.93 -0.41 0.93 16 35 H 0.13 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.15 0.20 8.06 -52.49 -0.42 -0.23 16 38 H 0.15 0.62 8.06 -52.48 -0.42 0.19 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.10 1.16 6.97 -51.93 -0.36 0.80 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -34.00 363.47 -7.08 -41.07 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -4.54 Total: -3.91 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.92 Total: 0.62 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.44 Total: -32.36 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.59 Total: -24.39 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.08 Total: -2.61 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.00 -7.08 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771152707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.852 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds