Wall clock time and date at job start Tue Mar 31 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99950 * 2 1 4 4 H 1.48498 * 109.46886 * 269.99847 * 3 2 1 5 5 H 1.48504 * 109.47317 * 29.99467 * 3 2 1 6 6 H 1.48498 * 109.47104 * 149.99549 * 3 2 1 7 7 C 1.37872 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47697 * 179.97438 * 9 7 2 11 11 O 1.45190 * 109.47792 * 179.97438 * 10 9 7 12 12 C 1.34225 * 117.00496 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.50705 * 120.00070 * 180.02562 * 12 11 10 15 15 H 1.09000 * 110.85475 * 303.78282 * 14 12 11 16 16 C 1.54624 * 111.00364 * 67.60579 * 14 12 11 17 17 C 1.51281 * 104.20087 * 142.92945 * 16 14 12 18 18 O 1.21292 * 124.94505 * 164.01185 * 17 16 14 19 19 N 1.34424 * 110.11017 * 343.74403 * 17 16 14 20 20 C 1.40173 * 124.34520 * 179.57000 * 19 17 16 21 21 C 1.38979 * 120.08428 * 269.75094 * 20 19 17 22 22 F 1.35096 * 120.04794 * 359.97438 * 21 20 19 23 23 C 1.38354 * 119.91045 * 179.76703 * 21 20 19 24 24 C 1.38259 * 120.08457 * 0.48756 * 23 21 20 25 25 C 1.38266 * 120.17446 * 359.76624 * 24 23 21 26 26 C 1.38347 * 120.08328 * 0.02562 * 25 24 23 27 27 F 1.35105 * 120.04330 * 179.97438 * 26 25 24 28 28 C 1.46764 * 111.30306 * 359.59326 * 19 17 16 29 29 H 0.96998 * 119.99836 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47386 * 59.99358 * 9 7 2 31 31 H 1.09005 * 109.47484 * 299.99747 * 9 7 2 32 32 H 1.09002 * 109.47063 * 59.99360 * 10 9 7 33 33 H 1.09007 * 109.46904 * 300.00034 * 10 9 7 34 34 H 1.09000 * 110.48926 * 24.24758 * 16 14 12 35 35 H 1.09001 * 110.48194 * 261.61114 * 16 14 12 36 36 H 1.08003 * 119.95375 * 180.23025 * 23 21 20 37 37 H 1.07997 * 119.91650 * 179.74702 * 24 23 21 38 38 H 1.08004 * 119.96147 * 179.97438 * 25 24 23 39 39 H 1.09002 * 110.24057 * 136.01578 * 28 19 17 40 40 H 1.08999 * 110.24100 * 257.92847 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2504 -6.0452 0.0018 13 8 3.4570 -5.9820 0.0013 14 6 1.5661 -7.3880 0.0018 15 1 0.8850 -7.4764 0.8482 16 6 0.8251 -7.6325 -1.3331 17 6 1.0219 -9.1082 -1.6019 18 8 0.3783 -9.7616 -2.3957 19 7 2.0177 -9.5885 -0.8373 20 6 2.4442 -10.9238 -0.8413 21 6 1.8691 -11.8414 0.0298 22 9 0.8980 -11.4479 0.8825 23 6 2.2895 -13.1595 0.0194 24 6 3.2873 -13.5620 -0.8489 25 6 3.8655 -12.6508 -1.7133 26 6 3.4476 -11.3320 -1.7120 27 9 4.0135 -10.4422 -2.5566 28 6 2.6005 -8.5355 0.0026 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8720 -3.6043 0.8905 33 1 2.8719 -3.6044 -0.8895 34 1 1.2692 -7.0369 -2.1306 35 1 -0.2351 -7.4018 -1.2286 36 1 1.8404 -13.8740 0.6935 37 1 3.6162 -14.5906 -0.8518 38 1 4.6450 -12.9688 -2.3899 39 1 2.7544 -8.9040 1.0168 40 1 3.5448 -8.1942 -0.4217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771152707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:57 Heat of formation + Delta-G solvation = -199.023767 kcal Electronic energy + Delta-G solvation = -28562.482960 eV Core-core repulsion = 23977.729495 eV Total energy + Delta-G solvation = -4584.753465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.18229 -50.13815 -42.37866 -41.19399 -39.62928 -38.16039 -37.40810 -35.46021 -34.58849 -32.32952 -31.44351 -30.51291 -29.09799 -27.29369 -25.43460 -24.15781 -24.04246 -22.92848 -21.71988 -21.20773 -19.47074 -19.22007 -18.75231 -18.61469 -18.25554 -17.76643 -17.38188 -17.28592 -16.78651 -16.67015 -16.47421 -16.44617 -16.33353 -15.97622 -15.50550 -15.39677 -15.04330 -14.69530 -14.41300 -14.38244 -14.26102 -13.85056 -13.18666 -13.12064 -13.09098 -13.07796 -12.89571 -12.82772 -12.68372 -12.59065 -12.50030 -11.92056 -11.59361 -11.48543 -11.44911 -11.27117 -10.60642 -10.34483 -10.08934 -9.89395 -8.26701 -6.39462 -0.29871 -0.15508 1.00415 1.13665 1.30713 1.42370 1.42969 1.54221 1.71592 2.21608 2.39745 2.64229 2.89635 3.08052 3.14864 3.27981 3.51913 3.58588 3.70549 3.72496 3.93583 4.09999 4.14707 4.24124 4.25812 4.30592 4.43088 4.59246 4.63812 4.67741 4.71535 4.88257 4.95821 5.10393 5.19687 5.25381 5.48502 5.50431 5.55148 5.69314 5.74539 6.06985 6.60786 6.73887 6.74903 7.30310 8.85645 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026948 B = 0.002093 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.785799 B =13376.764207 C =13645.110013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.065 0.935 9 C 0.029 3.971 10 C 0.090 3.910 11 O -0.356 6.356 12 C 0.473 3.527 13 O -0.530 6.530 14 C -0.082 4.082 15 H 0.163 0.837 16 C -0.133 4.133 17 C 0.525 3.475 18 O -0.552 6.552 19 N -0.575 5.575 20 C 0.040 3.960 21 C 0.117 3.883 22 F -0.133 7.133 23 C -0.148 4.148 24 C -0.036 4.036 25 C -0.150 4.150 26 C 0.109 3.891 27 F -0.140 7.140 28 C 0.120 3.880 29 H 0.267 0.733 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.178 0.822 37 H 0.195 0.805 38 H 0.174 0.826 39 H 0.116 0.884 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -31.234 1.247 32.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.083 0.917 9 C -0.008 4.008 10 C 0.017 3.983 11 O -0.272 6.272 12 C 0.317 3.683 13 O -0.420 6.420 14 C -0.101 4.101 15 H 0.181 0.819 16 C -0.173 4.173 17 C 0.315 3.685 18 O -0.430 6.430 19 N -0.306 5.306 20 C -0.052 4.052 21 C 0.096 3.904 22 F -0.112 7.112 23 C -0.167 4.167 24 C -0.053 4.053 25 C -0.169 4.169 26 C 0.088 3.912 27 F -0.119 7.119 28 C -0.001 4.001 29 H 0.076 0.924 30 H 0.025 0.975 31 H 0.027 0.973 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.159 0.841 36 H 0.196 0.804 37 H 0.212 0.788 38 H 0.191 0.809 39 H 0.134 0.866 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.769 -31.375 0.833 32.108 hybrid contribution 0.162 1.737 -0.142 1.750 sum 6.931 -29.638 0.691 30.446 Atomic orbital electron populations 1.70091 1.07754 1.28220 1.50450 1.25946 0.95831 1.03364 0.94208 0.85350 0.78588 0.77940 0.78596 1.19695 1.20516 1.18676 1.21375 0.93718 0.91256 1.52318 0.91653 1.18992 0.94405 0.90563 0.96854 1.23216 0.95015 0.78742 1.01312 1.86506 1.42330 1.15614 1.82710 1.23424 0.86044 0.87080 0.71779 1.90655 1.16560 1.88261 1.46482 1.21873 0.98540 0.87209 1.02472 0.81903 1.22313 1.05861 0.91873 0.97254 1.21326 0.78108 0.90400 0.78624 1.90718 1.50047 1.65586 1.36610 1.45514 1.35560 1.06740 1.42767 1.17665 1.00933 0.84668 1.01960 1.18001 0.88606 0.93706 0.90059 1.91516 1.60124 1.91745 1.67794 1.21645 0.99708 0.92727 1.02624 1.21513 0.91748 1.01664 0.90384 1.21626 1.03243 0.89375 1.02697 1.18147 0.93934 0.88897 0.90189 1.91513 1.83241 1.68403 1.68713 1.22215 0.95977 0.84729 0.97145 0.92388 0.97460 0.97298 0.91741 0.92020 0.86702 0.84054 0.80449 0.78760 0.80868 0.86630 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 13.29 21.45 0.28 -54.55 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.55 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.51 5.35 29.85 0.16 1.67 16 10 C 0.09 3.82 5.40 71.98 0.39 4.21 16 11 O -0.36 -12.90 10.22 -51.37 -0.52 -13.42 16 12 C 0.47 14.25 7.19 71.24 0.51 14.76 16 13 O -0.53 -18.44 15.26 21.96 0.34 -18.11 16 14 C -0.08 -1.73 3.65 -10.48 -0.04 -1.77 16 15 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 16 C -0.13 -2.98 6.41 30.59 0.20 -2.79 16 17 C 0.53 14.42 7.99 87.90 0.70 15.12 16 18 O -0.55 -19.18 17.71 -3.07 -0.05 -19.23 16 19 N -0.58 -13.75 2.62 -627.23 -1.64 -15.39 16 20 C 0.04 0.86 5.40 38.16 0.21 1.07 16 21 C 0.12 2.08 7.31 22.48 0.16 2.24 16 22 F -0.13 -2.72 17.08 44.97 0.77 -1.96 16 23 C -0.15 -1.36 10.02 22.30 0.22 -1.14 16 24 C -0.04 -0.19 10.04 22.28 0.22 0.03 16 25 C -0.15 -1.57 10.02 22.30 0.22 -1.35 16 26 C 0.11 2.14 7.31 22.47 0.16 2.30 16 27 F -0.14 -3.42 17.08 44.97 0.77 -2.65 16 28 C 0.12 2.48 6.64 86.83 0.58 3.05 16 29 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 33 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.11 2.66 7.89 -2.39 -0.02 2.64 16 35 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.20 -0.67 8.06 -2.91 -0.02 -0.70 16 38 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.09 2.06 6.97 -2.39 -0.02 2.04 16 Total: -1.00 -76.51 363.47 7.44 -69.07 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.09 Total: 3.10 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 4.40 Total: 7.96 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.36 Total: -69.94 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.24 Total: -50.76 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 1.54 Total: -4.61 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -76.51 7.44 -69.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771152707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.952 kcal (2) G-P(sol) polarization free energy of solvation -76.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds