Wall clock time and date at job start Tue Mar 31 2020 22:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48497 * 109.47277 * 269.99944 * 3 2 1 5 5 H 1.48506 * 109.47032 * 29.99887 * 3 2 1 6 6 H 1.48493 * 109.47067 * 149.99803 * 3 2 1 7 7 C 1.37885 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99836 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00178 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47155 * 180.02562 * 9 7 2 11 11 O 1.45193 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.34234 * 117.00312 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99247 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00340 * 179.97438 * 12 11 10 15 15 H 1.08997 * 110.85813 * 56.20828 * 14 12 11 16 16 C 1.54633 * 111.00233 * 292.39501 * 14 12 11 17 17 C 1.51278 * 104.19843 * 217.07037 * 16 14 12 18 18 O 1.21289 * 124.94275 * 196.22514 * 17 16 14 19 19 N 1.34570 * 110.14029 * 16.32152 * 17 16 14 20 20 C 1.40162 * 124.43605 * 180.35432 * 19 17 16 21 21 C 1.38990 * 120.08463 * 89.65020 * 20 19 17 22 22 F 1.35102 * 120.04220 * 359.97438 * 21 20 19 23 23 C 1.38346 * 119.91439 * 179.67768 * 21 20 19 24 24 C 1.38266 * 120.08047 * 0.62277 * 23 21 20 25 25 C 1.38262 * 120.17465 * 359.67607 * 24 23 21 26 26 C 1.38337 * 120.08671 * 0.02562 * 25 24 23 27 27 F 1.35105 * 120.04468 * 179.97438 * 26 25 24 28 28 C 1.46768 * 111.21385 * 0.29268 * 19 17 16 29 29 H 0.97001 * 119.99994 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47030 * 59.99746 * 9 7 2 31 31 H 1.09003 * 109.46733 * 300.00424 * 9 7 2 32 32 H 1.08997 * 109.47308 * 59.99413 * 10 9 7 33 33 H 1.09005 * 109.46818 * 299.99788 * 10 9 7 34 34 H 1.09002 * 110.48603 * 335.74828 * 16 14 12 35 35 H 1.08996 * 110.48483 * 98.39191 * 16 14 12 36 36 H 1.07995 * 119.95467 * 180.31976 * 23 21 20 37 37 H 1.08003 * 119.90822 * 179.70032 * 24 23 21 38 38 H 1.08003 * 119.95792 * 180.02562 * 25 24 23 39 39 H 1.09002 * 110.24468 * 224.04510 * 28 19 17 40 40 H 1.09002 * 110.24463 * 102.13267 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 8 5.4734 -2.6367 0.0001 12 6 6.0829 -3.8327 0.0008 13 8 5.4247 -4.8460 0.0017 14 6 7.5877 -3.9116 0.0003 15 1 8.0053 -3.3656 0.8462 16 6 8.1695 -3.3923 -1.3350 17 6 9.3489 -4.3007 -1.6041 18 8 10.2384 -4.0683 -2.3953 19 7 9.2670 -5.4051 -0.8397 20 6 10.2082 -6.4437 -0.8442 21 6 11.2975 -6.4005 0.0179 22 9 11.4513 -5.3566 0.8617 23 6 12.2208 -7.4308 0.0153 24 6 12.0678 -8.4962 -0.8526 25 6 10.9888 -8.5398 -1.7160 26 6 10.0580 -7.5164 -1.7150 27 9 9.0043 -7.5596 -2.5595 28 6 8.0643 -5.3810 0.0012 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 0.8894 31 1 3.8745 -0.6808 -0.8905 32 1 3.6577 -3.1507 -0.8896 33 1 3.6585 -3.1502 0.8904 34 1 7.4313 -3.4793 -2.1323 35 1 8.4999 -2.3589 -1.2309 36 1 13.0647 -7.4004 0.6885 37 1 12.7929 -9.2967 -0.8557 38 1 10.8725 -9.3739 -2.3922 39 1 8.3068 -5.6983 1.0154 40 1 7.2952 -6.0272 -0.4219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771153514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:00 Heat of formation + Delta-G solvation = -176.069578 kcal Electronic energy + Delta-G solvation = -28623.494747 eV Core-core repulsion = 24039.736650 eV Total energy + Delta-G solvation = -4583.758097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.47701 -49.42725 -41.38805 -40.03326 -39.00055 -37.00215 -36.20176 -33.85505 -33.32282 -30.91647 -30.87587 -29.78692 -28.18384 -25.79528 -24.27415 -23.46922 -23.28292 -20.87732 -20.64825 -20.26198 -18.71268 -18.22263 -17.97600 -17.62550 -17.04352 -16.58193 -16.29963 -16.15222 -16.05110 -15.78508 -15.74646 -15.59507 -15.02155 -14.86038 -14.31039 -14.24029 -14.13001 -13.70258 -13.32191 -13.21794 -13.09833 -12.55471 -12.55072 -12.52021 -12.34009 -12.04376 -11.74096 -11.58847 -11.33681 -10.79717 -10.75959 -10.43311 -10.08948 -9.98568 -9.79829 -9.48167 -9.45735 -9.39835 -9.33331 -8.66393 -6.16860 -4.18631 0.26840 0.38849 2.08966 2.17033 2.24430 2.69075 2.85671 3.24259 3.25306 3.33047 3.36446 3.80044 3.83401 4.03509 4.12271 4.24509 4.34939 4.42067 4.51824 4.53920 4.78173 4.96780 5.06187 5.16600 5.18084 5.25393 5.29173 5.39558 5.40920 5.51069 5.55222 5.83084 5.85060 5.87658 6.27255 6.36121 6.46691 6.63167 7.08861 7.14932 7.56840 7.67574 7.89527 8.34747 8.84383 9.42338 10.95547 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.002212 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.264132 B =12652.330355 C =12965.103121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.010 4.010 10 C 0.082 3.918 11 O -0.354 6.354 12 C 0.470 3.530 13 O -0.505 6.505 14 C -0.096 4.096 15 H 0.133 0.867 16 C -0.136 4.136 17 C 0.530 3.470 18 O -0.510 6.510 19 N -0.580 5.580 20 C 0.073 3.927 21 C 0.140 3.860 22 F -0.121 7.121 23 C -0.160 4.160 24 C -0.053 4.053 25 C -0.160 4.160 26 C 0.141 3.859 27 F -0.120 7.120 28 C 0.117 3.883 29 H 0.266 0.734 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.093 0.907 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.186 -17.176 0.469 32.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.010 3.990 11 O -0.270 6.270 12 C 0.312 3.688 13 O -0.394 6.394 14 C -0.116 4.116 15 H 0.150 0.850 16 C -0.176 4.176 17 C 0.319 3.681 18 O -0.384 6.384 19 N -0.312 5.312 20 C -0.019 4.019 21 C 0.119 3.881 22 F -0.100 7.100 23 C -0.180 4.180 24 C -0.072 4.072 25 C -0.179 4.179 26 C 0.120 3.880 27 F -0.098 7.098 28 C -0.004 4.004 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.111 0.889 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 27.228 -17.171 0.032 32.190 hybrid contribution -0.094 0.967 0.079 0.975 sum 27.135 -16.204 0.111 31.605 Atomic orbital electron populations 1.69891 1.06291 1.27271 1.49891 1.24943 0.94779 0.99217 0.94081 0.86748 0.80406 0.83251 0.78779 1.20028 1.21157 1.18743 1.20819 0.88198 0.95053 1.52630 0.90638 1.19636 0.97064 0.90007 0.97992 1.23478 0.71686 1.01848 1.02027 1.86484 1.26687 1.31417 1.82377 1.22728 0.90364 0.82582 0.73168 1.90678 1.66826 1.36561 1.45301 1.21832 0.90567 0.97739 1.01418 0.84950 1.22293 0.96685 1.01305 0.97336 1.21074 0.86742 0.81282 0.79037 1.90757 1.37507 1.75235 1.34864 1.45498 1.23448 1.18823 1.43412 1.17288 0.92961 0.91229 1.00427 1.17699 0.94491 0.85958 0.89995 1.91554 1.95093 1.55302 1.68007 1.21206 1.00272 0.93860 1.02635 1.20967 0.96373 0.97297 0.92516 1.21222 0.94929 0.99198 1.02565 1.17736 0.86156 0.94510 0.89587 1.91574 1.54111 1.96161 1.67946 1.22186 0.86039 0.95955 0.96243 0.92382 0.95300 0.95725 0.91468 0.91430 0.86362 0.85686 0.83302 0.83291 0.83270 0.88891 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.53 -14.66 9.66 -34.44 -0.33 -14.99 16 8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.22 4.42 -27.89 -0.12 -0.34 16 10 C 0.08 1.64 5.40 37.16 0.20 1.84 16 11 O -0.35 -5.99 10.22 -39.27 -0.40 -6.39 16 12 C 0.47 6.80 7.19 36.00 0.26 7.06 16 13 O -0.51 -8.56 15.25 -18.75 -0.29 -8.85 16 14 C -0.10 -0.99 3.65 -90.14 -0.33 -1.32 16 15 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 16 C -0.14 -1.43 6.41 -26.74 -0.17 -1.60 16 17 C 0.53 6.81 7.99 -10.79 -0.09 6.72 16 18 O -0.51 -8.27 17.71 5.55 0.10 -8.17 16 19 N -0.58 -6.60 2.63 -112.08 -0.29 -6.90 16 20 C 0.07 0.78 5.41 -83.49 -0.45 0.32 16 21 C 0.14 1.27 7.31 -39.26 -0.29 0.98 16 22 F -0.12 -1.24 17.08 2.25 0.04 -1.20 16 23 C -0.16 -0.94 10.02 -39.53 -0.40 -1.34 16 24 C -0.05 -0.24 10.04 -39.56 -0.40 -0.64 16 25 C -0.16 -0.99 10.02 -39.54 -0.40 -1.39 16 26 C 0.14 1.37 7.31 -39.27 -0.29 1.08 16 27 F -0.12 -1.38 17.08 2.25 0.04 -1.34 16 28 C 0.12 1.17 6.64 -3.12 -0.02 1.15 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 31 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 32 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 33 H 0.07 1.36 8.13 -51.93 -0.42 0.93 16 34 H 0.12 1.25 7.89 -51.93 -0.41 0.84 16 35 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.15 0.17 8.06 -52.48 -0.42 -0.26 16 38 H 0.15 0.59 8.06 -52.48 -0.42 0.16 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.12 6.96 -51.93 -0.36 0.76 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -34.51 359.88 -6.70 -41.21 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -4.51 Total: -3.49 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.92 Total: -0.50 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.48 Total: -33.05 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.59 Total: -23.41 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.51 -6.70 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771153514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.857 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds