Wall clock time and date at job start Tue Mar 31 2020 22:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48497 * 109.47277 * 269.99944 * 3 2 1 5 5 H 1.48506 * 109.47032 * 29.99887 * 3 2 1 6 6 H 1.48493 * 109.47067 * 149.99803 * 3 2 1 7 7 C 1.37885 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99836 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00178 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47155 * 180.02562 * 9 7 2 11 11 O 1.45193 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.34234 * 117.00312 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99247 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00340 * 179.97438 * 12 11 10 15 15 H 1.08997 * 110.85813 * 56.20828 * 14 12 11 16 16 C 1.54633 * 111.00233 * 292.39501 * 14 12 11 17 17 C 1.51278 * 104.19843 * 217.07037 * 16 14 12 18 18 O 1.21289 * 124.94275 * 196.22514 * 17 16 14 19 19 N 1.34570 * 110.14029 * 16.32152 * 17 16 14 20 20 C 1.40162 * 124.43605 * 180.35432 * 19 17 16 21 21 C 1.38990 * 120.08463 * 89.65020 * 20 19 17 22 22 F 1.35102 * 120.04220 * 359.97438 * 21 20 19 23 23 C 1.38346 * 119.91439 * 179.67768 * 21 20 19 24 24 C 1.38266 * 120.08047 * 0.62277 * 23 21 20 25 25 C 1.38262 * 120.17465 * 359.67607 * 24 23 21 26 26 C 1.38337 * 120.08671 * 0.02562 * 25 24 23 27 27 F 1.35105 * 120.04468 * 179.97438 * 26 25 24 28 28 C 1.46768 * 111.21385 * 0.29268 * 19 17 16 29 29 H 0.97001 * 119.99994 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47030 * 59.99746 * 9 7 2 31 31 H 1.09003 * 109.46733 * 300.00424 * 9 7 2 32 32 H 1.08997 * 109.47308 * 59.99413 * 10 9 7 33 33 H 1.09005 * 109.46818 * 299.99788 * 10 9 7 34 34 H 1.09002 * 110.48603 * 335.74828 * 16 14 12 35 35 H 1.08996 * 110.48483 * 98.39191 * 16 14 12 36 36 H 1.07995 * 119.95467 * 180.31976 * 23 21 20 37 37 H 1.08003 * 119.90822 * 179.70032 * 24 23 21 38 38 H 1.08003 * 119.95792 * 180.02562 * 25 24 23 39 39 H 1.09002 * 110.24468 * 224.04510 * 28 19 17 40 40 H 1.09002 * 110.24463 * 102.13267 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 8 5.4734 -2.6367 0.0001 12 6 6.0829 -3.8327 0.0008 13 8 5.4247 -4.8460 0.0017 14 6 7.5877 -3.9116 0.0003 15 1 8.0053 -3.3656 0.8462 16 6 8.1695 -3.3923 -1.3350 17 6 9.3489 -4.3007 -1.6041 18 8 10.2384 -4.0683 -2.3953 19 7 9.2670 -5.4051 -0.8397 20 6 10.2082 -6.4437 -0.8442 21 6 11.2975 -6.4005 0.0179 22 9 11.4513 -5.3566 0.8617 23 6 12.2208 -7.4308 0.0153 24 6 12.0678 -8.4962 -0.8526 25 6 10.9888 -8.5398 -1.7160 26 6 10.0580 -7.5164 -1.7150 27 9 9.0043 -7.5596 -2.5595 28 6 8.0643 -5.3810 0.0012 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 0.8894 31 1 3.8745 -0.6808 -0.8905 32 1 3.6577 -3.1507 -0.8896 33 1 3.6585 -3.1502 0.8904 34 1 7.4313 -3.4793 -2.1323 35 1 8.4999 -2.3589 -1.2309 36 1 13.0647 -7.4004 0.6885 37 1 12.7929 -9.2967 -0.8557 38 1 10.8725 -9.3739 -2.3922 39 1 8.3068 -5.6983 1.0154 40 1 7.2952 -6.0272 -0.4219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771153514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:59 Heat of formation + Delta-G solvation = -196.442071 kcal Electronic energy + Delta-G solvation = -28624.378165 eV Core-core repulsion = 24039.736650 eV Total energy + Delta-G solvation = -4584.641514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.18564 -50.13789 -42.37150 -41.20018 -39.63060 -38.17571 -37.42060 -35.40606 -34.58743 -32.76001 -31.44696 -30.53816 -29.09309 -27.45144 -25.36204 -24.12605 -24.04482 -22.63825 -21.74225 -21.20953 -19.50231 -19.29700 -18.86302 -18.74620 -18.35668 -17.80029 -17.37620 -17.30048 -16.78419 -16.63201 -16.47532 -16.35670 -16.26565 -15.99355 -15.50675 -15.45157 -15.03902 -14.92041 -14.59531 -14.38605 -14.24339 -13.85231 -13.32416 -13.18787 -13.13034 -13.09888 -12.90269 -12.83012 -12.66049 -12.48871 -12.36102 -11.80956 -11.69119 -11.52233 -11.44739 -11.30623 -10.80424 -10.33798 -10.08875 -9.89722 -8.33626 -6.41655 -0.30086 -0.15744 1.00052 1.14336 1.30037 1.39721 1.40982 1.53339 1.69471 2.21305 2.35021 2.63975 2.89416 3.01602 3.14524 3.27696 3.50973 3.58212 3.70319 3.72178 3.93321 4.09811 4.14844 4.19210 4.19737 4.31283 4.43592 4.59532 4.63584 4.64940 4.68446 4.87965 4.95487 5.04082 5.10212 5.20226 5.30968 5.48364 5.53038 5.55817 5.69480 6.16097 6.59142 6.65101 6.74500 7.23412 8.82292 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.002212 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.264132 B =12652.330355 C =12965.103121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.541 4.541 8 H 0.035 0.965 9 C -0.005 4.005 10 C 0.093 3.907 11 O -0.351 6.351 12 C 0.474 3.526 13 O -0.531 6.531 14 C -0.080 4.080 15 H 0.167 0.833 16 C -0.132 4.132 17 C 0.524 3.476 18 O -0.552 6.552 19 N -0.576 5.576 20 C 0.040 3.960 21 C 0.118 3.882 22 F -0.133 7.133 23 C -0.148 4.148 24 C -0.036 4.036 25 C -0.151 4.151 26 C 0.109 3.891 27 F -0.140 7.140 28 C 0.118 3.882 29 H 0.270 0.730 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.145 0.855 36 H 0.178 0.822 37 H 0.195 0.805 38 H 0.173 0.827 39 H 0.115 0.885 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.698 -17.496 1.266 35.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.579 4.579 8 H 0.054 0.946 9 C -0.043 4.043 10 C 0.020 3.980 11 O -0.267 6.267 12 C 0.317 3.683 13 O -0.420 6.420 14 C -0.099 4.099 15 H 0.184 0.816 16 C -0.172 4.172 17 C 0.314 3.686 18 O -0.429 6.429 19 N -0.307 5.307 20 C -0.052 4.052 21 C 0.097 3.903 22 F -0.111 7.111 23 C -0.167 4.167 24 C -0.053 4.053 25 C -0.170 4.170 26 C 0.088 3.912 27 F -0.119 7.119 28 C -0.003 4.003 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.163 0.837 36 H 0.195 0.805 37 H 0.212 0.788 38 H 0.191 0.809 39 H 0.133 0.867 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 30.754 -17.534 0.849 35.412 hybrid contribution -1.152 0.844 -0.166 1.438 sum 29.602 -16.690 0.684 33.990 Atomic orbital electron populations 1.70044 1.08358 1.28568 1.51462 1.25966 0.95664 1.03623 0.93540 0.85613 0.79658 0.77697 0.79458 1.18987 1.20856 1.16381 1.21127 0.90851 0.93715 1.52233 0.94626 1.19478 0.94009 0.92119 0.98660 1.23000 0.73782 0.99797 1.01444 1.86460 1.24570 1.32797 1.82866 1.23445 0.91774 0.81332 0.71763 1.90681 1.67784 1.37224 1.46350 1.21873 0.87021 0.98405 1.02629 0.81597 1.22327 0.95693 1.01990 0.97177 1.21425 0.86687 0.81900 0.78560 1.90720 1.39183 1.76330 1.36712 1.45550 1.23660 1.18690 1.42792 1.17649 0.93862 0.91608 1.02045 1.17991 0.95161 0.86840 0.90317 1.91516 1.95193 1.56064 1.68361 1.21642 0.99786 0.92718 1.02580 1.21511 0.95934 0.97515 0.90380 1.21620 0.94143 0.98521 1.02729 1.18151 0.86973 0.95919 0.90168 1.91514 1.55296 1.96377 1.68708 1.22214 0.85436 0.95506 0.97098 0.92129 0.94382 0.94670 0.92289 0.92007 0.86616 0.83657 0.80457 0.78812 0.80947 0.86694 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 2 C 0.01 0.57 5.47 84.66 0.46 1.04 16 3 Si 0.95 42.65 27.47 68.60 1.88 44.53 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 7 C -0.54 -30.59 9.66 25.60 0.25 -30.34 16 8 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 9 C -0.01 -0.24 4.42 29.85 0.13 -0.11 16 10 C 0.09 3.70 5.40 71.98 0.39 4.09 16 11 O -0.35 -11.37 10.22 -51.46 -0.53 -11.90 16 12 C 0.47 13.21 7.19 71.23 0.51 13.72 16 13 O -0.53 -17.97 15.25 21.95 0.33 -17.63 16 14 C -0.08 -1.51 3.65 -10.48 -0.04 -1.55 16 15 H 0.17 2.11 8.14 -2.39 -0.02 2.09 16 16 C -0.13 -2.63 6.41 30.59 0.20 -2.43 16 17 C 0.52 13.50 7.99 87.87 0.70 14.21 16 18 O -0.55 -18.32 17.71 -3.06 -0.05 -18.37 16 19 N -0.58 -13.08 2.63 -627.02 -1.65 -14.72 16 20 C 0.04 0.84 5.41 38.17 0.21 1.05 16 21 C 0.12 2.00 7.31 22.48 0.16 2.16 16 22 F -0.13 -2.58 17.08 44.97 0.77 -1.81 16 23 C -0.15 -1.28 10.02 22.30 0.22 -1.05 16 24 C -0.04 -0.18 10.04 22.28 0.22 0.04 16 25 C -0.15 -1.53 10.02 22.30 0.22 -1.30 16 26 C 0.11 2.07 7.31 22.47 0.16 2.24 16 27 F -0.14 -3.37 17.08 44.97 0.77 -2.60 16 28 C 0.12 2.29 6.64 86.83 0.58 2.87 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.04 1.66 7.20 -2.39 -0.02 1.65 16 31 H 0.03 1.53 7.57 -2.39 -0.02 1.51 16 32 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 33 H 0.06 2.51 8.13 -2.38 -0.02 2.49 16 34 H 0.12 2.39 7.89 -2.39 -0.02 2.37 16 35 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.19 -0.73 8.06 -2.91 -0.02 -0.75 16 38 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.09 1.94 6.96 -2.39 -0.02 1.93 16 Total: -1.00 -78.82 359.88 7.25 -71.57 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.03 Total: 4.18 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 4.39 Total: 4.63 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.35 Total: -72.60 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.25 Total: -47.90 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 1.54 Total: -4.41 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -78.82 7.25 -71.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771153514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.869 kcal (2) G-P(sol) polarization free energy of solvation -78.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds