Wall clock time and date at job start Tue Mar 31 2020 22:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47402 * 2 1 4 4 H 1.09005 * 109.47016 * 305.00236 * 3 2 1 5 5 C 1.50699 * 109.47087 * 185.00118 * 3 2 1 6 6 H 1.08000 * 119.99802 * 239.99959 * 5 3 2 7 7 C 1.37872 * 119.99971 * 60.00401 * 5 3 2 8 8 N 1.31521 * 120.00069 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99928 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46985 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46906 * 119.99924 * 9 7 5 12 12 H 1.48502 * 109.47257 * 239.99683 * 9 7 5 13 13 O 1.45201 * 109.46975 * 65.00134 * 3 2 1 14 14 C 1.34751 * 116.99892 * 270.00133 * 13 3 2 15 15 O 1.21509 * 120.00131 * 0.02562 * 14 13 3 16 16 C 1.47471 * 119.99761 * 179.97438 * 14 13 3 17 17 C 1.39826 * 120.07984 * 353.52909 * 16 14 13 18 18 C 1.38079 * 119.84809 * 179.97438 * 17 16 14 19 19 O 1.36004 * 119.99799 * 179.97438 * 18 17 16 20 20 C 1.42901 * 117.00060 * 0.02562 * 19 18 17 21 21 C 1.39451 * 119.99878 * 0.27381 * 18 17 16 22 22 O 1.35789 * 119.92017 * 179.70259 * 21 18 17 23 23 C 1.42906 * 116.99865 * 179.97438 * 22 21 18 24 24 C 1.38808 * 120.15524 * 359.44864 * 21 18 17 25 25 C 1.37813 * 120.15128 * 0.55240 * 24 21 18 26 26 N 1.48025 * 120.00131 * 179.74676 * 25 24 21 27 27 O 1.21797 * 119.99811 * 128.96687 * 26 25 24 28 28 O 1.21803 * 119.99453 * 308.97484 * 26 25 24 29 29 H 1.08996 * 109.46454 * 299.99633 * 1 2 3 30 30 H 1.08998 * 109.46785 * 59.99767 * 1 2 3 31 31 H 1.09002 * 109.46815 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46838 * 240.00278 * 2 1 3 33 33 H 1.08998 * 109.47378 * 120.00706 * 2 1 3 34 34 H 0.97005 * 119.99392 * 180.02562 * 8 7 5 35 35 H 1.08000 * 120.07416 * 359.97438 * 17 16 14 36 36 H 1.09002 * 109.46878 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.47252 * 59.99480 * 20 19 18 38 38 H 1.09002 * 109.47012 * 299.99282 * 20 19 18 39 39 H 1.08999 * 109.47005 * 300.00588 * 23 22 21 40 40 H 1.09004 * 109.47135 * 59.99871 * 23 22 21 41 41 H 1.08993 * 109.47448 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.92759 * 180.29973 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3366 -2.1730 9 14 6.0050 0.8811 -1.3819 10 1 6.5988 1.5460 -0.1943 11 1 6.4970 -0.5177 -1.4631 12 1 6.3991 1.6166 -2.6103 13 8 1.6560 2.0916 1.2407 14 6 0.4683 2.7279 1.2561 15 8 -0.2276 2.7395 0.2601 16 6 0.0125 3.4091 2.4820 17 6 0.7441 3.2832 3.6670 18 6 0.3133 3.9235 4.8120 19 8 1.0223 3.8027 5.9663 20 6 2.2026 2.9984 5.9216 21 6 -0.8520 4.6890 4.7862 22 8 -1.2775 5.3131 5.9146 23 6 -2.4785 6.0813 5.8176 24 6 -1.5752 4.8187 3.6085 25 6 -1.1510 4.1823 2.4621 26 7 -1.9279 4.3184 1.2094 27 8 -1.3682 4.6456 0.1783 28 8 -3.1268 4.1033 1.2100 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0618 -2.9496 35 1 1.6441 2.6864 3.6866 36 1 2.6717 2.9866 6.9054 37 1 2.8983 3.4143 5.1927 38 1 1.9384 1.9812 5.6324 39 1 -2.3458 6.8712 5.0782 40 1 -3.3007 5.4335 5.5134 41 1 -2.7055 6.5249 6.7869 42 1 -2.4746 5.4164 3.5916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:17 Heat of formation + Delta-G solvation = -123.583639 kcal Electronic energy + Delta-G solvation = -30610.198907 eV Core-core repulsion = 26139.804287 eV Total energy + Delta-G solvation = -4470.394620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.07337 -41.00255 -39.73196 -39.03947 -37.32091 -36.23343 -35.77933 -33.64285 -31.69289 -31.50135 -31.10639 -28.31057 -27.72153 -27.42600 -26.15829 -23.98024 -23.16796 -22.46785 -21.27332 -19.85905 -19.55059 -18.58223 -18.47269 -17.92663 -17.36267 -16.77715 -16.65678 -16.56070 -16.31103 -15.72848 -15.57971 -15.44114 -15.10353 -14.68348 -14.20196 -13.75055 -13.37331 -13.04388 -12.98767 -12.84274 -12.35532 -12.21236 -11.91096 -11.73354 -11.66510 -11.50485 -11.43782 -11.31017 -11.23159 -11.03365 -10.87624 -10.75491 -10.73073 -10.32600 -9.93280 -9.81409 -9.54043 -9.46649 -8.89998 -8.58541 -8.51845 -6.24517 -4.32546 -0.05850 0.35836 1.13956 1.47648 2.50892 2.58147 2.67925 3.11071 3.19539 3.27793 3.32660 3.35294 4.00829 4.23689 4.25457 4.34441 4.59910 4.69729 4.70290 4.89219 4.92365 4.93971 4.96607 5.07466 5.08545 5.26423 5.41492 5.62512 5.73847 6.15824 6.22205 6.37166 6.39244 6.54942 6.76870 6.85627 6.87862 7.07569 7.11022 7.52268 7.64850 7.79826 7.90644 8.05568 8.38949 8.75922 9.32621 10.82271 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003780 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.668312 B = 7404.815738 C = 8835.265065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.053 0.947 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.884 5.884 9 Si 0.912 3.088 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.345 6.345 14 C 0.485 3.515 15 O -0.479 6.479 16 C -0.052 4.052 17 C -0.116 4.116 18 C 0.132 3.868 19 O -0.295 6.295 20 C 0.016 3.984 21 C 0.132 3.868 22 O -0.291 6.291 23 C 0.017 3.983 24 C -0.138 4.138 25 C 0.019 3.981 26 N 0.023 4.977 27 O -0.079 6.079 28 O -0.178 6.178 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.112 0.888 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.175 0.825 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.203 8.071 17.830 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.071 0.929 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.206 1.206 13 O -0.262 6.262 14 C 0.326 3.674 15 O -0.367 6.367 16 C -0.055 4.055 17 C -0.135 4.135 18 C 0.085 3.915 19 O -0.207 6.207 20 C -0.079 4.079 21 C 0.084 3.916 22 O -0.203 6.203 23 C -0.077 4.077 24 C -0.158 4.158 25 C -0.063 4.063 26 N 0.552 4.448 27 O -0.315 6.315 28 O -0.386 6.386 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.193 0.807 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.010 7.921 18.432 21.252 hybrid contribution 0.602 -0.141 -0.828 1.033 sum -6.408 7.780 17.604 20.285 Atomic orbital electron populations 1.21868 0.98344 0.99204 1.00669 1.22043 0.92598 0.99167 1.03513 1.20845 0.95250 0.88726 0.78120 0.92891 1.21012 0.89291 1.39353 1.06467 0.91260 1.24883 0.99303 0.94678 0.94986 1.69898 1.35371 1.37488 1.09426 0.86219 0.83723 0.77888 0.78295 1.19528 1.20700 1.20645 1.86501 1.32635 1.62143 1.44901 1.20452 0.82430 0.78082 0.86404 1.90972 1.55001 1.56714 1.34043 1.18932 0.93099 0.98747 0.94686 1.21495 1.01657 1.00923 0.89440 1.18283 0.90773 0.95626 0.86865 1.86210 1.38160 1.67396 1.28957 1.23339 0.84913 0.94757 1.04893 1.18004 0.92390 0.95107 0.86063 1.86208 1.42465 1.62081 1.29558 1.23281 0.84854 0.94854 1.04742 1.20493 1.02259 1.03567 0.89443 1.20529 0.94780 1.04978 0.86056 1.43141 1.00831 0.98864 1.01951 1.94630 1.72275 1.44878 1.19728 1.94506 0.97260 1.54586 1.92240 0.95486 0.92503 0.94599 0.87036 0.93961 0.92290 0.80736 0.87326 0.91435 0.91610 0.92120 0.91877 0.87240 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.56 37.16 0.32 -2.86 16 2 C -0.14 -3.28 5.49 -26.73 -0.15 -3.43 16 3 C 0.22 5.74 2.25 -27.88 -0.06 5.68 16 4 H 0.05 1.54 7.16 -51.93 -0.37 1.17 16 5 C -0.52 -14.10 8.90 -34.44 -0.31 -14.40 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -24.47 11.29 55.43 0.63 -23.84 16 9 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 O -0.35 -7.84 9.07 -40.63 -0.37 -8.20 16 14 C 0.48 10.28 6.21 34.49 0.21 10.50 16 15 O -0.48 -11.38 10.15 -27.46 -0.28 -11.66 16 16 C -0.05 -0.88 5.87 -104.99 -0.62 -1.49 16 17 C -0.12 -1.56 8.60 -39.05 -0.34 -1.90 16 18 C 0.13 1.58 6.69 -39.19 -0.26 1.32 16 19 O -0.29 -3.19 10.28 -34.40 -0.35 -3.54 16 20 C 0.02 0.12 9.81 101.05 0.99 1.11 16 21 C 0.13 1.51 6.71 -38.92 -0.26 1.25 16 22 O -0.29 -2.89 10.27 -33.72 -0.35 -3.24 16 23 C 0.02 0.10 9.81 101.05 0.99 1.09 16 24 C -0.14 -1.66 8.80 -39.53 -0.35 -2.00 16 25 C 0.02 0.30 6.31 -79.54 -0.50 -0.20 16 26 N 0.02 0.42 3.59 34.16 0.12 0.55 16 27 O -0.08 -1.65 16.09 -37.25 -0.60 -2.25 16 28 O -0.18 -3.25 19.14 -29.46 -0.56 -3.82 16 29 H 0.03 0.58 6.06 -51.93 -0.31 0.26 16 30 H 0.06 1.33 7.79 -51.93 -0.40 0.93 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.11 2.94 5.95 -51.92 -0.31 2.63 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.18 2.16 5.85 -52.49 -0.31 1.85 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 38 H 0.07 0.47 7.66 -51.93 -0.40 0.08 16 39 H 0.06 0.30 7.64 -51.93 -0.40 -0.09 16 40 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 41 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.16 1.51 6.27 -52.49 -0.33 1.18 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -32.44 358.41 -6.66 -39.11 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.86 Total: -0.21 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.42 Total: -3.72 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.75 Total: -23.30 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -2.51 Total: -32.71 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.44 -6.66 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.478 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds