Wall clock time and date at job start Tue Mar 31 2020 22:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47402 * 2 1 4 4 H 1.09005 * 109.47016 * 305.00236 * 3 2 1 5 5 C 1.50699 * 109.47087 * 185.00118 * 3 2 1 6 6 H 1.08000 * 119.99802 * 239.99959 * 5 3 2 7 7 C 1.37872 * 119.99971 * 60.00401 * 5 3 2 8 8 N 1.31521 * 120.00069 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99928 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46985 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46906 * 119.99924 * 9 7 5 12 12 H 1.48502 * 109.47257 * 239.99683 * 9 7 5 13 13 O 1.45201 * 109.46975 * 65.00134 * 3 2 1 14 14 C 1.34751 * 116.99892 * 270.00133 * 13 3 2 15 15 O 1.21509 * 120.00131 * 0.02562 * 14 13 3 16 16 C 1.47471 * 119.99761 * 179.97438 * 14 13 3 17 17 C 1.39826 * 120.07984 * 353.52909 * 16 14 13 18 18 C 1.38079 * 119.84809 * 179.97438 * 17 16 14 19 19 O 1.36004 * 119.99799 * 179.97438 * 18 17 16 20 20 C 1.42901 * 117.00060 * 0.02562 * 19 18 17 21 21 C 1.39451 * 119.99878 * 0.27381 * 18 17 16 22 22 O 1.35789 * 119.92017 * 179.70259 * 21 18 17 23 23 C 1.42906 * 116.99865 * 179.97438 * 22 21 18 24 24 C 1.38808 * 120.15524 * 359.44864 * 21 18 17 25 25 C 1.37813 * 120.15128 * 0.55240 * 24 21 18 26 26 N 1.48025 * 120.00131 * 179.74676 * 25 24 21 27 27 O 1.21797 * 119.99811 * 128.96687 * 26 25 24 28 28 O 1.21803 * 119.99453 * 308.97484 * 26 25 24 29 29 H 1.08996 * 109.46454 * 299.99633 * 1 2 3 30 30 H 1.08998 * 109.46785 * 59.99767 * 1 2 3 31 31 H 1.09002 * 109.46815 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46838 * 240.00278 * 2 1 3 33 33 H 1.08998 * 109.47378 * 120.00706 * 2 1 3 34 34 H 0.97005 * 119.99392 * 180.02562 * 8 7 5 35 35 H 1.08000 * 120.07416 * 359.97438 * 17 16 14 36 36 H 1.09002 * 109.46878 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.47252 * 59.99480 * 20 19 18 38 38 H 1.09002 * 109.47012 * 299.99282 * 20 19 18 39 39 H 1.08999 * 109.47005 * 300.00588 * 23 22 21 40 40 H 1.09004 * 109.47135 * 59.99871 * 23 22 21 41 41 H 1.08993 * 109.47448 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.92759 * 180.29973 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3366 -2.1730 9 14 6.0050 0.8811 -1.3819 10 1 6.5988 1.5460 -0.1943 11 1 6.4970 -0.5177 -1.4631 12 1 6.3991 1.6166 -2.6103 13 8 1.6560 2.0916 1.2407 14 6 0.4683 2.7279 1.2561 15 8 -0.2276 2.7395 0.2601 16 6 0.0125 3.4091 2.4820 17 6 0.7441 3.2832 3.6670 18 6 0.3133 3.9235 4.8120 19 8 1.0223 3.8027 5.9663 20 6 2.2026 2.9984 5.9216 21 6 -0.8520 4.6890 4.7862 22 8 -1.2775 5.3131 5.9146 23 6 -2.4785 6.0813 5.8176 24 6 -1.5752 4.8187 3.6085 25 6 -1.1510 4.1823 2.4621 26 7 -1.9279 4.3184 1.2094 27 8 -1.3682 4.6456 0.1783 28 8 -3.1268 4.1033 1.2100 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0618 -2.9496 35 1 1.6441 2.6864 3.6866 36 1 2.6717 2.9866 6.9054 37 1 2.8983 3.4143 5.1927 38 1 1.9384 1.9812 5.6324 39 1 -2.3458 6.8712 5.0782 40 1 -3.3007 5.4335 5.5134 41 1 -2.7055 6.5249 6.7869 42 1 -2.4746 5.4164 3.5916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:17 Heat of formation + Delta-G solvation = -142.173158 kcal Electronic energy + Delta-G solvation = -30611.005009 eV Core-core repulsion = 26139.804287 eV Total energy + Delta-G solvation = -4471.200722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.40918 -42.08235 -41.34307 -39.84657 -38.50179 -37.73358 -37.42658 -35.59003 -33.48243 -32.65722 -32.30305 -29.41387 -29.11111 -28.29559 -27.46083 -25.57336 -24.69142 -23.62700 -22.74264 -21.65375 -20.76735 -19.85504 -19.78019 -19.08618 -18.87421 -18.39227 -18.01507 -17.60894 -17.38575 -17.15263 -17.02887 -16.40230 -16.39352 -15.99843 -15.31931 -14.96768 -14.81131 -14.61927 -14.35813 -13.88298 -13.78820 -13.47678 -13.37582 -13.19986 -12.88361 -12.86433 -12.78346 -12.62032 -12.60774 -12.50483 -12.31715 -12.30478 -12.22503 -12.11764 -11.79964 -11.63354 -11.38861 -10.87755 -10.59651 -10.54590 -9.52339 -8.28502 -6.45968 -1.33255 -0.70813 -0.20716 0.19449 1.20164 1.41245 1.43090 1.53380 1.61861 1.82393 1.88570 2.00467 2.37750 2.94774 3.01773 3.21707 3.40742 3.43245 3.75069 3.99705 4.06784 4.23429 4.29455 4.31070 4.31838 4.33139 4.36480 4.43652 4.48492 4.69741 4.74730 4.76356 4.78810 4.98908 5.13053 5.14099 5.25362 5.47707 5.61161 5.63994 5.86256 6.02343 6.04238 6.40107 6.53310 6.75816 7.24480 8.78756 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.003780 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.668312 B = 7404.815738 C = 8835.265065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.127 4.127 3 C 0.227 3.773 4 H 0.007 0.993 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.983 3.017 10 H -0.260 1.260 11 H -0.272 1.272 12 H -0.279 1.279 13 O -0.346 6.346 14 C 0.480 3.520 15 O -0.511 6.511 16 C -0.079 4.079 17 C -0.106 4.106 18 C 0.141 3.859 19 O -0.295 6.295 20 C 0.004 3.996 21 C 0.152 3.848 22 O -0.294 6.294 23 C 0.002 3.998 24 C -0.123 4.123 25 C 0.007 3.993 26 N 0.026 4.974 27 O -0.154 6.154 28 O -0.149 6.149 29 H 0.028 0.972 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.271 0.729 35 H 0.183 0.817 36 H 0.137 0.863 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 8.581 21.357 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.165 4.165 3 C 0.174 3.826 4 H 0.025 0.975 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.184 1.184 11 H -0.197 1.197 12 H -0.205 1.205 13 O -0.262 6.262 14 C 0.324 3.676 15 O -0.402 6.402 16 C -0.082 4.082 17 C -0.126 4.126 18 C 0.093 3.907 19 O -0.208 6.208 20 C -0.089 4.089 21 C 0.103 3.897 22 O -0.206 6.206 23 C -0.091 4.091 24 C -0.142 4.142 25 C -0.076 4.076 26 N 0.551 4.449 27 O -0.373 6.373 28 O -0.369 6.369 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.200 0.800 36 H 0.155 0.845 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.154 0.846 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.759 8.483 21.907 24.445 hybrid contribution 0.382 -0.226 -1.637 1.696 sum -6.377 8.257 20.270 22.797 Atomic orbital electron populations 1.21712 0.96831 1.00595 0.99581 1.21878 0.93870 0.97990 1.02799 1.20516 0.94933 0.89148 0.77976 0.97527 1.21308 0.89896 1.40087 1.07145 0.91033 1.25823 1.04300 0.93851 0.94296 1.70032 1.37474 1.37811 1.09892 0.85136 0.77537 0.78299 0.78435 1.18387 1.19671 1.20509 1.86468 1.33943 1.62635 1.43137 1.21195 0.81330 0.77378 0.87718 1.90960 1.55633 1.57797 1.35793 1.18651 0.94796 1.00967 0.93794 1.21473 1.01367 1.00945 0.88769 1.18296 0.90953 0.94783 0.86677 1.86237 1.38922 1.67647 1.27963 1.23665 0.83897 0.94574 1.06784 1.18026 0.91585 0.93862 0.86240 1.86243 1.44083 1.61824 1.28430 1.23714 0.83466 0.95014 1.06922 1.20736 1.02963 1.02616 0.87926 1.20615 0.94798 1.06635 0.85512 1.43510 1.00846 0.97885 1.02677 1.94651 1.72532 1.48636 1.21477 1.94442 0.97893 1.52208 1.92386 0.95306 0.94846 0.91764 0.89233 0.92898 0.92009 0.80001 0.84526 0.91241 0.91074 0.90929 0.90632 0.84644 0.79120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.56 71.98 0.62 -5.30 16 2 C -0.13 -6.40 5.49 30.60 0.17 -6.23 16 3 C 0.23 12.33 2.25 29.85 0.07 12.39 16 4 H 0.01 0.43 7.16 -2.38 -0.02 0.41 16 5 C -0.55 -30.30 8.90 25.60 0.23 -30.08 16 6 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 7 C 0.02 0.94 5.29 84.65 0.45 1.38 16 8 N -0.91 -52.15 11.29 21.45 0.24 -51.91 16 9 Si 0.98 42.06 29.54 68.60 2.03 44.08 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 13 O -0.35 -16.36 9.07 -56.62 -0.51 -16.87 16 14 C 0.48 21.40 6.21 70.26 0.44 21.83 16 15 O -0.51 -26.05 10.15 27.64 0.28 -25.77 16 16 C -0.08 -2.71 5.87 -20.10 -0.12 -2.83 16 17 C -0.11 -2.76 8.60 22.62 0.19 -2.56 16 18 C 0.14 3.03 6.69 22.52 0.15 3.18 16 19 O -0.30 -5.47 10.28 -79.59 -0.82 -6.29 16 20 C 0.00 0.06 9.81 113.37 1.11 1.17 16 21 C 0.15 3.00 6.71 22.70 0.15 3.15 16 22 O -0.29 -4.66 10.27 -77.18 -0.79 -5.46 16 23 C 0.00 0.02 9.81 113.37 1.11 1.13 16 24 C -0.12 -2.65 8.80 22.31 0.20 -2.45 16 25 C 0.01 0.21 6.31 36.63 0.23 0.44 16 26 N 0.03 0.99 3.59 -45.84 -0.16 0.83 16 27 O -0.15 -6.88 16.09 26.34 0.42 -6.46 16 28 O -0.15 -5.40 19.14 18.88 0.36 -5.04 16 29 H 0.03 1.26 6.06 -2.39 -0.01 1.25 16 30 H 0.03 1.64 7.79 -2.39 -0.02 1.62 16 31 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.09 4.92 5.95 -2.38 -0.01 4.90 16 33 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 35 H 0.18 4.34 5.85 -2.91 -0.02 4.33 16 36 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 38 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 39 H 0.07 0.41 7.64 -2.39 -0.02 0.39 16 40 H 0.08 0.42 7.66 -2.38 -0.02 0.41 16 41 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.19 2.87 6.27 -2.91 -0.02 2.85 16 Total: -1.00 -74.68 358.41 7.12 -67.56 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.08 Total: 10.09 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 4.99 Total: -4.77 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.08 Total: -51.08 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -1.06 Total: -65.88 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -74.68 7.12 -67.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.614 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds