Wall clock time and date at job start Tue Mar 31 2020 22:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46913 * 2 1 4 4 H 1.09008 * 109.47129 * 55.00109 * 3 2 1 5 5 C 1.50699 * 109.47194 * 174.99589 * 3 2 1 6 6 H 1.08002 * 119.99786 * 119.99773 * 5 3 2 7 7 C 1.37877 * 119.99874 * 300.00352 * 5 3 2 8 8 N 1.31520 * 119.99451 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00304 * 359.97438 * 7 5 3 10 10 H 1.48492 * 109.47341 * 89.99796 * 9 7 5 11 11 H 1.48497 * 109.46933 * 210.00131 * 9 7 5 12 12 H 1.48499 * 109.46808 * 329.99705 * 9 7 5 13 13 O 1.45195 * 109.47558 * 294.99817 * 3 2 1 14 14 C 1.34756 * 116.99862 * 89.99781 * 13 3 2 15 15 O 1.21506 * 120.00239 * 0.02562 * 14 13 3 16 16 C 1.47475 * 119.99861 * 180.02562 * 14 13 3 17 17 C 1.39826 * 120.07534 * 55.31616 * 16 14 13 18 18 C 1.38079 * 119.84514 * 180.02562 * 17 16 14 19 19 O 1.36007 * 120.00212 * 180.02562 * 18 17 16 20 20 C 1.42902 * 116.99646 * 359.97438 * 19 18 17 21 21 C 1.39454 * 120.00122 * 0.27234 * 18 17 16 22 22 O 1.35788 * 119.92875 * 179.70598 * 21 18 17 23 23 C 1.42892 * 117.00247 * 180.02562 * 22 21 18 24 24 C 1.38814 * 120.15174 * 359.45159 * 21 18 17 25 25 C 1.37806 * 120.15141 * 0.55117 * 24 21 18 26 26 N 1.48025 * 120.00106 * 179.74786 * 25 24 21 27 27 O 1.21799 * 119.99676 * 6.55996 * 26 25 24 28 28 O 1.21794 * 120.00133 * 186.56752 * 26 25 24 29 29 H 1.08998 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47332 * 299.99638 * 1 2 3 31 31 H 1.08999 * 109.46860 * 60.00467 * 1 2 3 32 32 H 1.09001 * 109.47262 * 239.99928 * 2 1 3 33 33 H 1.09003 * 109.46836 * 120.00051 * 2 1 3 34 34 H 0.97008 * 119.99733 * 180.02562 * 8 7 5 35 35 H 1.08001 * 120.08040 * 0.04182 * 17 16 14 36 36 H 1.08999 * 109.46690 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47371 * 60.00411 * 20 19 18 38 38 H 1.09005 * 109.47187 * 300.00412 * 20 19 18 39 39 H 1.09009 * 109.47371 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.47104 * 299.99576 * 23 22 21 41 41 H 1.08998 * 109.47946 * 59.99998 * 23 22 21 42 42 H 1.07996 * 119.92367 * 180.25328 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4540 0.8797 1.3359 9 14 3.0962 0.1100 2.5708 10 1 2.8744 -1.3260 2.2647 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8094 2.6395 13 8 1.6560 2.0917 -1.2406 14 6 0.4681 2.7279 -1.2560 15 8 -0.2274 2.7402 -0.2598 16 6 0.0124 3.4092 -2.4819 17 6 -0.0711 2.7034 -3.6861 18 6 -0.4979 3.3462 -4.8312 19 8 -0.5808 2.6626 -6.0041 20 6 -0.2100 1.2828 -5.9783 21 6 -0.8391 4.6976 -4.7862 22 8 -1.2530 5.3297 -5.9145 23 6 -1.5862 6.7143 -5.7973 24 6 -0.7617 5.3968 -3.5896 25 6 -0.3365 4.7616 -2.4430 26 7 -0.2499 5.5119 -1.1699 27 8 -0.6661 6.6548 -1.1071 28 8 0.2376 4.9864 -0.1852 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8771 0.4812 2.1126 35 1 0.1974 1.6579 -3.7204 36 1 -0.3215 0.8580 -6.9759 37 1 -0.8535 0.7466 -5.2808 38 1 0.8281 1.1913 -5.6586 39 1 -1.8999 7.0961 -6.7690 40 1 -2.3986 6.8330 -5.0804 41 1 -0.7140 7.2702 -5.4534 42 1 -1.0308 6.4423 -3.5581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:20 Heat of formation + Delta-G solvation = -116.626480 kcal Electronic energy + Delta-G solvation = -30720.014460 eV Core-core repulsion = 26249.921525 eV Total energy + Delta-G solvation = -4470.092935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.22451 -41.10419 -39.87193 -39.11753 -37.43800 -36.45977 -35.88718 -33.66974 -31.99046 -31.67948 -31.31924 -28.39610 -27.91067 -27.75486 -26.33521 -23.99935 -22.90784 -22.56189 -21.60440 -20.21928 -19.60000 -18.67191 -18.65769 -17.80810 -17.41909 -17.20375 -16.75495 -16.69515 -16.56615 -15.95792 -15.78713 -15.46591 -15.18980 -14.73780 -14.23097 -13.83421 -13.63360 -13.25752 -13.05535 -12.87195 -12.52712 -12.23176 -12.07665 -12.03673 -11.84632 -11.73968 -11.67059 -11.57532 -11.38593 -11.28928 -10.96492 -10.84317 -10.78290 -10.20177 -10.02010 -9.67881 -9.60629 -9.58396 -9.11399 -8.67799 -8.64112 -6.23342 -4.26040 -0.33678 0.33356 1.27565 1.35362 2.44893 2.54056 2.59316 2.81565 3.16658 3.17925 3.32263 3.35530 3.94574 4.18649 4.26514 4.28496 4.52339 4.61168 4.71150 4.77901 4.81783 4.86412 4.90087 5.05935 5.07876 5.14637 5.30102 5.37980 5.60686 5.72898 5.83673 5.90576 6.32821 6.35964 6.41625 6.48582 6.56689 6.68145 6.79429 6.95859 7.29188 7.45462 7.75353 8.10800 8.46832 8.82481 9.32991 10.88580 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003815 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.059762 B = 7338.414712 C = 8344.159818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.198 3.802 4 H 0.055 0.945 5 C -0.525 4.525 6 H 0.087 0.913 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.258 1.258 13 O -0.329 6.329 14 C 0.495 3.505 15 O -0.470 6.470 16 C -0.024 4.024 17 C -0.135 4.135 18 C 0.151 3.849 19 O -0.291 6.291 20 C 0.015 3.985 21 C 0.120 3.880 22 O -0.291 6.291 23 C 0.017 3.983 24 C -0.121 4.121 25 C -0.005 4.005 26 N 0.024 4.976 27 O -0.172 6.172 28 O -0.110 6.110 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.270 0.730 35 H 0.169 0.831 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.902 5.087 -17.004 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.144 3.856 4 H 0.072 0.928 5 C -0.563 4.563 6 H 0.105 0.895 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.182 1.182 13 O -0.245 6.245 14 C 0.335 3.665 15 O -0.358 6.358 16 C -0.027 4.027 17 C -0.155 4.155 18 C 0.103 3.897 19 O -0.203 6.203 20 C -0.080 4.080 21 C 0.072 3.928 22 O -0.204 6.204 23 C -0.078 4.078 24 C -0.141 4.141 25 C -0.089 4.089 26 N 0.546 4.454 27 O -0.382 6.382 28 O -0.335 6.335 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.187 0.813 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.061 4.686 -17.611 23.642 hybrid contribution -0.337 -0.297 1.434 1.503 sum -15.397 4.390 -16.177 22.760 Atomic orbital electron populations 1.21917 0.97033 1.00091 1.01767 1.22395 0.94275 0.99574 1.02406 1.21107 0.96558 0.87893 0.80028 0.92758 1.20739 0.87480 1.40034 1.08009 0.89521 1.24709 0.94948 0.95255 0.97258 1.69835 1.08500 1.44202 1.29824 0.87021 0.81281 0.79941 0.81417 1.19988 1.21555 1.18201 1.86606 1.32668 1.62145 1.43052 1.20335 0.82207 0.77663 0.86291 1.90885 1.55204 1.56671 1.33001 1.18897 0.98507 0.91038 0.94245 1.21219 1.03034 1.02247 0.88977 1.18298 0.95986 0.89096 0.86313 1.86236 1.81673 1.24795 1.27633 1.23361 1.01202 0.78458 1.04974 1.17974 0.99220 0.89455 0.86136 1.86198 1.80121 1.25322 1.28770 1.23291 1.00831 0.78822 1.04812 1.20668 1.01896 1.02357 0.89147 1.20558 1.11372 0.91354 0.85601 1.43360 0.99008 1.00751 1.02297 1.94476 1.50527 1.02357 1.90839 1.94757 1.43265 1.70377 1.25093 0.93782 0.92216 0.94004 0.91229 0.91492 0.92018 0.81343 0.87162 0.91774 0.91288 0.87246 0.91911 0.91882 0.81206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.56 37.16 0.32 -2.52 16 2 C -0.15 -3.24 5.15 -26.73 -0.14 -3.38 16 3 C 0.20 4.88 1.84 -27.89 -0.05 4.83 16 4 H 0.05 1.44 6.22 -51.92 -0.32 1.12 16 5 C -0.53 -14.89 9.48 -34.44 -0.33 -15.21 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 7 C 0.08 2.33 5.45 -17.82 -0.10 2.23 16 8 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 9 Si 0.87 21.42 24.41 -169.99 -4.15 17.27 16 10 H -0.27 -6.35 6.83 56.52 0.39 -5.96 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 13 O -0.33 -7.38 9.82 -40.64 -0.40 -7.78 16 14 C 0.49 9.99 4.41 34.49 0.15 10.15 16 15 O -0.47 -10.44 11.94 -27.29 -0.33 -10.76 16 16 C -0.02 -0.39 5.76 -104.99 -0.60 -0.99 16 17 C -0.14 -1.68 8.77 -39.05 -0.34 -2.02 16 18 C 0.15 1.69 6.69 -39.19 -0.26 1.43 16 19 O -0.29 -2.89 10.28 -34.40 -0.35 -3.24 16 20 C 0.01 0.09 9.81 101.05 0.99 1.09 16 21 C 0.12 1.31 6.71 -38.92 -0.26 1.05 16 22 O -0.29 -2.77 10.26 -33.71 -0.35 -3.12 16 23 C 0.02 0.09 9.81 101.05 0.99 1.09 16 24 C -0.12 -1.40 8.53 -39.53 -0.34 -1.74 16 25 C -0.01 -0.08 6.85 -79.55 -0.55 -0.63 16 26 N 0.02 0.44 4.45 34.16 0.15 0.59 16 27 O -0.17 -2.93 18.46 -29.46 -0.54 -3.47 16 28 O -0.11 -2.38 14.98 -37.09 -0.56 -2.93 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.19 7.79 -51.93 -0.40 0.78 16 31 H 0.04 0.74 6.06 -51.93 -0.31 0.43 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.07 1.52 3.22 -51.93 -0.17 1.35 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.17 1.75 6.28 -52.49 -0.33 1.42 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 38 H 0.07 0.43 7.66 -51.93 -0.40 0.04 16 39 H 0.11 0.37 8.14 -51.92 -0.42 -0.06 16 40 H 0.06 0.29 7.64 -51.93 -0.40 -0.10 16 41 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 42 H 0.17 1.55 5.83 -52.49 -0.31 1.24 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -34.45 351.79 -5.69 -40.14 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.73 Total: -1.62 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.51 Total: -4.63 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.93 Total: -25.15 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -2.52 Total: -31.31 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.15 Total: 17.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.45 -5.69 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.487 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds