Wall clock time and date at job start Tue Mar 31 2020 22:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46913 * 2 1 4 4 H 1.09008 * 109.47129 * 55.00109 * 3 2 1 5 5 C 1.50699 * 109.47194 * 174.99589 * 3 2 1 6 6 H 1.08002 * 119.99786 * 119.99773 * 5 3 2 7 7 C 1.37877 * 119.99874 * 300.00352 * 5 3 2 8 8 N 1.31520 * 119.99451 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00304 * 359.97438 * 7 5 3 10 10 H 1.48492 * 109.47341 * 89.99796 * 9 7 5 11 11 H 1.48497 * 109.46933 * 210.00131 * 9 7 5 12 12 H 1.48499 * 109.46808 * 329.99705 * 9 7 5 13 13 O 1.45195 * 109.47558 * 294.99817 * 3 2 1 14 14 C 1.34756 * 116.99862 * 89.99781 * 13 3 2 15 15 O 1.21506 * 120.00239 * 0.02562 * 14 13 3 16 16 C 1.47475 * 119.99861 * 180.02562 * 14 13 3 17 17 C 1.39826 * 120.07534 * 55.31616 * 16 14 13 18 18 C 1.38079 * 119.84514 * 180.02562 * 17 16 14 19 19 O 1.36007 * 120.00212 * 180.02562 * 18 17 16 20 20 C 1.42902 * 116.99646 * 359.97438 * 19 18 17 21 21 C 1.39454 * 120.00122 * 0.27234 * 18 17 16 22 22 O 1.35788 * 119.92875 * 179.70598 * 21 18 17 23 23 C 1.42892 * 117.00247 * 180.02562 * 22 21 18 24 24 C 1.38814 * 120.15174 * 359.45159 * 21 18 17 25 25 C 1.37806 * 120.15141 * 0.55117 * 24 21 18 26 26 N 1.48025 * 120.00106 * 179.74786 * 25 24 21 27 27 O 1.21799 * 119.99676 * 6.55996 * 26 25 24 28 28 O 1.21794 * 120.00133 * 186.56752 * 26 25 24 29 29 H 1.08998 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47332 * 299.99638 * 1 2 3 31 31 H 1.08999 * 109.46860 * 60.00467 * 1 2 3 32 32 H 1.09001 * 109.47262 * 239.99928 * 2 1 3 33 33 H 1.09003 * 109.46836 * 120.00051 * 2 1 3 34 34 H 0.97008 * 119.99733 * 180.02562 * 8 7 5 35 35 H 1.08001 * 120.08040 * 0.04182 * 17 16 14 36 36 H 1.08999 * 109.46690 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47371 * 60.00411 * 20 19 18 38 38 H 1.09005 * 109.47187 * 300.00412 * 20 19 18 39 39 H 1.09009 * 109.47371 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.47104 * 299.99576 * 23 22 21 41 41 H 1.08998 * 109.47946 * 59.99998 * 23 22 21 42 42 H 1.07996 * 119.92367 * 180.25328 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4540 0.8797 1.3359 9 14 3.0962 0.1100 2.5708 10 1 2.8744 -1.3260 2.2647 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8094 2.6395 13 8 1.6560 2.0917 -1.2406 14 6 0.4681 2.7279 -1.2560 15 8 -0.2274 2.7402 -0.2598 16 6 0.0124 3.4092 -2.4819 17 6 -0.0711 2.7034 -3.6861 18 6 -0.4979 3.3462 -4.8312 19 8 -0.5808 2.6626 -6.0041 20 6 -0.2100 1.2828 -5.9783 21 6 -0.8391 4.6976 -4.7862 22 8 -1.2530 5.3297 -5.9145 23 6 -1.5862 6.7143 -5.7973 24 6 -0.7617 5.3968 -3.5896 25 6 -0.3365 4.7616 -2.4430 26 7 -0.2499 5.5119 -1.1699 27 8 -0.6661 6.6548 -1.1071 28 8 0.2376 4.9864 -0.1852 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8771 0.4812 2.1126 35 1 0.1974 1.6579 -3.7204 36 1 -0.3215 0.8580 -6.9759 37 1 -0.8535 0.7466 -5.2808 38 1 0.8281 1.1913 -5.6586 39 1 -1.8999 7.0961 -6.7690 40 1 -2.3986 6.8330 -5.0804 41 1 -0.7140 7.2702 -5.4534 42 1 -1.0308 6.4423 -3.5581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:19 Heat of formation + Delta-G solvation = -139.110103 kcal Electronic energy + Delta-G solvation = -30720.989423 eV Core-core repulsion = 26249.921525 eV Total energy + Delta-G solvation = -4471.067898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.52063 -42.12483 -41.40380 -39.85858 -38.57325 -37.85537 -37.47897 -35.57219 -33.96647 -32.71295 -32.32981 -29.81858 -29.13734 -28.29153 -27.56376 -25.38996 -24.52756 -23.65696 -23.00318 -21.84399 -20.80962 -19.95458 -19.83804 -19.10600 -18.84487 -18.53292 -18.25668 -18.12078 -17.39736 -17.28331 -16.90284 -16.47771 -16.39142 -15.98646 -15.37961 -15.25612 -14.83289 -14.73634 -14.24688 -14.02540 -13.93781 -13.80525 -13.57598 -13.27551 -13.14366 -12.84757 -12.79694 -12.62425 -12.58545 -12.56928 -12.37015 -12.31591 -12.29614 -12.02318 -11.76681 -11.53873 -11.37799 -11.16282 -10.75545 -10.59833 -9.53386 -8.45678 -6.54303 -1.56106 -0.64789 0.04258 0.12760 1.03086 1.21374 1.31773 1.41152 1.49118 1.79837 1.88327 1.93466 2.19375 2.86726 2.94041 3.20220 3.33540 3.42221 3.72415 3.92368 4.04934 4.06745 4.16359 4.18794 4.25892 4.34139 4.35377 4.36715 4.39854 4.55749 4.66628 4.76018 4.78856 4.91762 4.92234 5.00144 5.04733 5.28705 5.32132 5.54002 5.63480 6.03510 6.08515 6.33170 6.48189 6.68508 7.09502 8.70274 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003815 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.059762 B = 7338.414712 C = 8344.159818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.145 4.145 3 C 0.202 3.798 4 H 0.029 0.971 5 C -0.540 4.540 6 H 0.045 0.955 7 C 0.034 3.966 8 N -0.929 5.929 9 Si 0.935 3.065 10 H -0.243 1.243 11 H -0.284 1.284 12 H -0.258 1.258 13 O -0.341 6.341 14 C 0.496 3.504 15 O -0.495 6.495 16 C -0.051 4.051 17 C -0.126 4.126 18 C 0.162 3.838 19 O -0.293 6.293 20 C 0.002 3.998 21 C 0.134 3.866 22 O -0.295 6.295 23 C 0.002 3.998 24 C -0.107 4.107 25 C -0.022 4.022 26 N 0.027 4.973 27 O -0.115 6.115 28 O -0.218 6.218 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.276 0.724 35 H 0.186 0.814 36 H 0.137 0.863 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.576 4.829 -19.646 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C 0.148 3.852 4 H 0.046 0.954 5 C -0.577 4.577 6 H 0.063 0.937 7 C -0.166 4.166 8 N -0.567 5.567 9 Si 0.760 3.240 10 H -0.168 1.168 11 H -0.211 1.211 12 H -0.183 1.183 13 O -0.258 6.258 14 C 0.338 3.662 15 O -0.383 6.383 16 C -0.054 4.054 17 C -0.145 4.145 18 C 0.114 3.886 19 O -0.204 6.204 20 C -0.092 4.092 21 C 0.086 3.914 22 O -0.208 6.208 23 C -0.091 4.091 24 C -0.126 4.126 25 C -0.106 4.106 26 N 0.543 4.457 27 O -0.346 6.346 28 O -0.417 6.417 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.203 0.797 36 H 0.155 0.845 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.152 0.848 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -17.649 4.259 -20.168 27.136 hybrid contribution 0.394 0.066 1.844 1.887 sum -17.254 4.325 -18.324 25.538 Atomic orbital electron populations 1.21835 0.94521 1.02288 1.01321 1.22272 0.96463 0.96823 1.02661 1.20762 0.94094 0.89931 0.80395 0.95374 1.20924 0.89505 1.39943 1.07366 0.93676 1.25519 0.96080 0.95578 0.99461 1.69956 1.10322 1.45409 1.31003 0.86055 0.79291 0.80505 0.78189 1.16826 1.21093 1.18288 1.86569 1.34529 1.62944 1.41709 1.20930 0.80886 0.76778 0.87603 1.90848 1.55666 1.57199 1.34549 1.18716 1.01379 0.91649 0.93652 1.21324 1.02374 1.02891 0.87941 1.18344 0.94559 0.89458 0.86260 1.86265 1.81100 1.26464 1.26599 1.23724 1.01592 0.76772 1.07096 1.18017 0.97676 0.89421 0.86282 1.86230 1.79367 1.27436 1.27753 1.23707 1.01803 0.76660 1.06958 1.20894 1.00522 1.03455 0.87745 1.20677 1.13764 0.91196 0.84980 1.43732 0.98152 1.00785 1.03031 1.94389 1.47040 1.02292 1.90834 1.94795 1.48352 1.71400 1.27128 0.90077 0.93811 0.93456 0.89968 0.92098 0.91500 0.79683 0.84537 0.90582 0.91089 0.84777 0.90558 0.90876 0.78415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.56 71.98 0.62 -4.56 16 2 C -0.14 -6.25 5.15 30.60 0.16 -6.10 16 3 C 0.20 10.43 1.84 29.85 0.06 10.49 16 4 H 0.03 1.60 6.22 -2.38 -0.01 1.58 16 5 C -0.54 -32.32 9.48 25.60 0.24 -32.08 16 6 H 0.04 2.98 8.06 -2.91 -0.02 2.96 16 7 C 0.03 1.98 5.45 84.65 0.46 2.44 16 8 N -0.93 -57.54 13.96 21.45 0.30 -57.24 16 9 Si 0.93 44.90 24.41 68.60 1.67 46.57 16 10 H -0.24 -10.51 6.83 99.48 0.68 -9.83 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.26 -12.38 6.53 99.48 0.65 -11.73 16 13 O -0.34 -16.09 9.82 -56.67 -0.56 -16.65 16 14 C 0.50 20.94 4.41 70.26 0.31 21.25 16 15 O -0.49 -23.16 11.94 27.49 0.33 -22.83 16 16 C -0.05 -1.66 5.76 -20.10 -0.12 -1.78 16 17 C -0.13 -2.95 8.77 22.62 0.20 -2.75 16 18 C 0.16 3.20 6.69 22.53 0.15 3.36 16 19 O -0.29 -4.84 10.28 -79.63 -0.82 -5.65 16 20 C 0.00 0.02 9.81 113.37 1.11 1.13 16 21 C 0.13 2.51 6.71 22.70 0.15 2.66 16 22 O -0.30 -4.45 10.26 -77.17 -0.79 -5.24 16 23 C 0.00 0.01 9.81 113.37 1.11 1.13 16 24 C -0.11 -2.20 8.53 22.31 0.19 -2.01 16 25 C -0.02 -0.68 6.85 36.63 0.25 -0.43 16 26 N 0.03 0.99 4.45 -45.85 -0.20 0.79 16 27 O -0.12 -3.80 18.46 18.89 0.35 -3.46 16 28 O -0.22 -10.13 14.98 26.19 0.39 -9.73 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.04 1.72 7.79 -2.39 -0.02 1.70 16 31 H 0.05 1.64 6.06 -2.39 -0.01 1.63 16 32 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.06 2.69 3.22 -2.39 -0.01 2.68 16 34 H 0.28 15.75 8.31 -92.70 -0.77 14.98 16 35 H 0.19 3.55 6.28 -2.91 -0.02 3.53 16 36 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.60 7.66 -2.39 -0.02 0.59 16 38 H 0.07 0.71 7.66 -2.38 -0.02 0.69 16 39 H 0.13 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.08 0.36 7.64 -2.39 -0.02 0.35 16 41 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 42 H 0.20 2.84 5.83 -2.91 -0.02 2.82 16 Total: -1.00 -81.08 351.79 6.57 -74.52 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.00 Total: 6.18 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 4.89 Total: -7.25 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.10 Total: -56.45 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -1.10 Total: -63.56 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.67 Total: 46.57 kcal Total: -81.08 6.57 -74.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.594 kcal (2) G-P(sol) polarization free energy of solvation -81.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds