Wall clock time and date at job start Tue Mar 31 2020 22:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46603 * 2 1 4 4 H 1.09000 * 109.47107 * 55.00163 * 3 2 1 5 5 C 1.50704 * 109.46853 * 174.99561 * 3 2 1 6 6 H 1.08007 * 119.99981 * 119.99989 * 5 3 2 7 7 C 1.37878 * 120.00099 * 300.00497 * 5 3 2 8 8 N 1.31512 * 120.00237 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99802 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47330 * 89.99942 * 9 7 5 11 11 H 1.48499 * 109.47403 * 209.99668 * 9 7 5 12 12 H 1.48503 * 109.47391 * 329.99632 * 9 7 5 13 13 O 1.45198 * 109.47272 * 294.99799 * 3 2 1 14 14 C 1.34219 * 117.00085 * 90.00228 * 13 3 2 15 15 O 1.20830 * 120.00292 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00044 * 180.02562 * 14 13 3 17 17 O 1.42907 * 109.47413 * 180.02562 * 16 14 13 18 18 C 1.35897 * 117.00227 * 180.02562 * 17 16 14 19 19 C 1.38793 * 120.02676 * 0.24823 * 18 17 16 20 20 C 1.38151 * 120.05371 * 180.28033 * 19 18 17 21 21 C 1.38202 * 120.10743 * 359.44349 * 20 19 18 22 22 N 1.48009 * 119.97090 * 180.27908 * 21 20 19 23 23 O 1.21801 * 120.00276 * 0.02562 * 22 21 20 24 24 O 1.21800 * 119.99814 * 180.02562 * 22 21 20 25 25 C 1.38752 * 120.05339 * 0.30560 * 21 20 19 26 26 O 1.35892 * 120.02402 * 180.02562 * 25 21 20 27 27 C 1.42899 * 117.00153 * 180.02562 * 26 25 21 28 28 C 1.38607 * 120.02390 * 180.02562 * 18 17 16 29 29 H 1.08993 * 109.47668 * 300.00089 * 1 2 3 30 30 H 1.09000 * 109.46935 * 60.00309 * 1 2 3 31 31 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47405 * 240.00551 * 2 1 3 33 33 H 1.09000 * 109.46935 * 119.99691 * 2 1 3 34 34 H 0.96993 * 120.00406 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47495 * 59.99849 * 16 14 13 36 36 H 1.09010 * 109.47126 * 299.99830 * 16 14 13 37 37 H 1.08001 * 119.97505 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.94930 * 179.72919 * 20 19 18 39 39 H 1.09000 * 109.47457 * 59.99211 * 27 26 25 40 40 H 1.08996 * 109.47816 * 180.02562 * 27 26 25 41 41 H 1.09010 * 109.46516 * 299.99722 * 27 26 25 42 42 H 1.08002 * 120.05990 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0048 0.8802 1.3813 10 1 6.4426 2.1131 2.0839 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8397 0.0271 13 8 1.6558 2.0917 -1.2407 14 6 0.4727 2.7254 -1.2560 15 8 -0.2190 2.7377 -0.2653 16 6 0.0069 3.4215 -2.5088 17 8 -1.2710 4.0172 -2.2757 18 6 -1.8371 4.6888 -3.3127 19 6 -1.1777 4.7680 -4.5315 20 6 -1.7500 5.4554 -5.5844 21 6 -2.9852 6.0561 -5.4305 22 7 -3.5983 6.7866 -6.5623 23 8 -3.0145 6.8578 -7.6290 24 8 -4.6866 7.3165 -6.4271 25 6 -3.6506 5.9753 -4.2156 26 8 -4.8653 6.5657 -4.0651 27 6 -5.4925 6.4427 -2.7870 28 6 -3.0754 5.2913 -3.1555 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8291 -0.0603 2.9503 35 1 -0.0720 2.6969 -3.3192 36 1 0.7239 4.1958 -2.7822 37 1 -0.2146 4.2953 -4.6557 38 1 -1.2335 5.5197 -6.5307 39 1 -4.8538 6.8883 -2.0244 40 1 -6.4533 6.9572 -2.8027 41 1 -5.6491 5.3883 -2.5591 42 1 -3.5915 5.2281 -2.2089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:22 Heat of formation + Delta-G solvation = -135.713408 kcal Electronic energy + Delta-G solvation = -28849.416831 eV Core-core repulsion = 24378.496225 eV Total energy + Delta-G solvation = -4470.920606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.30357 -41.09792 -40.12816 -39.34319 -37.34312 -36.47781 -35.94415 -33.71693 -32.01595 -31.51872 -31.09871 -29.20230 -28.03276 -27.28744 -26.09700 -23.60131 -23.13485 -22.64109 -21.17789 -19.88744 -19.73203 -18.98183 -18.72902 -17.74390 -17.64224 -17.05427 -16.90288 -16.79691 -16.47654 -16.26481 -15.75215 -15.17597 -15.13793 -14.86384 -14.35460 -13.81871 -13.69583 -13.42331 -13.06525 -12.96765 -12.45353 -12.31887 -12.00581 -11.89161 -11.64093 -11.57835 -11.46857 -11.40595 -11.31951 -11.17178 -11.14216 -11.06853 -10.82395 -10.41277 -9.98749 -9.85319 -9.56854 -9.44235 -9.11271 -8.99192 -8.60018 -6.32102 -4.40348 -0.26954 0.50608 1.16583 1.31105 2.01914 2.46797 2.60806 2.81563 3.15701 3.22092 3.25226 3.53677 3.87471 4.09836 4.20159 4.32206 4.35177 4.53327 4.66006 4.68568 4.76672 4.82691 5.00182 5.00647 5.06863 5.27178 5.30002 5.46604 5.58663 6.07406 6.13536 6.20626 6.28250 6.45024 6.60863 6.67527 6.78171 6.98943 7.03543 7.45396 7.56398 7.63199 7.74686 7.97877 8.35676 8.69103 9.25398 10.74600 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.002095 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.597299 B =13364.210956 C =14050.767463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.224 3.776 4 H 0.050 0.950 5 C -0.525 4.525 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.913 3.087 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.454 3.546 15 O -0.492 6.492 16 C 0.057 3.943 17 O -0.276 6.276 18 C 0.230 3.770 19 C -0.246 4.246 20 C 0.024 3.976 21 C -0.123 4.123 22 N 0.045 4.955 23 O -0.187 6.187 24 O -0.147 6.147 25 C 0.235 3.765 26 O -0.278 6.278 27 C 0.016 3.984 28 C -0.250 4.250 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.111 0.889 34 H 0.268 0.732 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.066 0.934 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 8.584 -11.398 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.563 4.563 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.740 3.260 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.195 1.195 13 O -0.266 6.266 14 C 0.294 3.706 15 O -0.380 6.380 16 C -0.018 4.018 17 O -0.186 6.186 18 C 0.181 3.819 19 C -0.265 4.265 20 C 0.005 3.995 21 C -0.209 4.209 22 N 0.560 4.440 23 O -0.395 6.395 24 O -0.366 6.366 25 C 0.184 3.816 26 O -0.188 6.188 27 C -0.079 4.079 28 C -0.270 4.270 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.175 0.825 38 H 0.181 0.819 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.084 0.916 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.535 8.172 -10.289 18.159 hybrid contribution 0.885 -0.073 0.143 0.899 sum -11.650 8.099 -10.146 17.443 Atomic orbital electron populations 1.21868 0.98301 0.99244 1.00667 1.22051 0.92657 0.99146 1.03649 1.20824 0.95235 0.88770 0.77972 0.93247 1.21006 0.89319 1.39498 1.06490 0.91186 1.24890 0.99428 0.94575 0.94976 1.69873 1.35570 1.37499 1.09421 0.86250 0.83533 0.77809 0.78429 1.20334 1.20855 1.19538 1.86451 1.32829 1.62278 1.45007 1.22309 0.81920 0.78027 0.88315 1.90681 1.55082 1.57145 1.35049 1.22258 0.83559 0.98985 0.97029 1.86176 1.33674 1.64184 1.34570 1.18990 0.90539 0.86194 0.86143 1.21295 1.04151 1.08644 0.92434 1.20676 0.89958 0.88693 1.00160 1.20355 0.99359 1.14114 0.87053 1.43207 1.00385 0.98918 1.01445 1.94519 1.64326 1.66246 1.14445 1.94575 1.06800 1.45910 1.89319 1.18218 0.84923 0.87998 0.90412 1.86429 1.27735 1.68884 1.35717 1.23385 0.98701 1.03144 0.82642 1.20389 0.97499 1.08252 1.00859 0.92728 0.95150 0.94579 0.93758 0.87079 0.92201 0.87296 0.87176 0.82465 0.81854 0.91530 0.86898 0.91551 0.82056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.57 37.16 0.32 -2.61 16 2 C -0.14 -3.17 5.49 -26.73 -0.15 -3.32 16 3 C 0.22 5.51 2.25 -27.88 -0.06 5.45 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.53 -13.77 8.90 -34.44 -0.31 -14.08 16 6 H 0.07 1.80 7.81 -52.48 -0.41 1.39 16 7 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 8 N -0.89 -23.85 11.29 55.43 0.63 -23.22 16 9 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 O -0.35 -7.33 9.81 -39.23 -0.38 -7.71 16 14 C 0.45 8.21 6.49 36.01 0.23 8.44 16 15 O -0.49 -10.45 13.64 -25.48 -0.35 -10.80 16 16 C 0.06 0.67 5.33 36.01 0.19 0.86 16 17 O -0.28 -3.40 9.67 -39.37 -0.38 -3.78 16 18 C 0.23 2.29 6.68 -39.24 -0.26 2.03 16 19 C -0.25 -1.98 9.04 -39.41 -0.36 -2.33 16 20 C 0.02 0.21 9.55 -39.63 -0.38 -0.17 16 21 C -0.12 -1.36 6.87 -79.78 -0.55 -1.90 16 22 N 0.04 0.59 4.45 34.05 0.15 0.74 16 23 O -0.19 -2.53 18.44 -29.46 -0.54 -3.07 16 24 O -0.15 -2.10 17.23 -36.50 -0.63 -2.73 16 25 C 0.23 2.40 6.67 -39.24 -0.26 2.14 16 26 O -0.28 -2.74 8.50 -41.56 -0.35 -3.10 16 27 C 0.02 0.09 9.81 101.05 0.99 1.08 16 28 C -0.25 -2.35 8.97 -39.29 -0.35 -2.70 16 29 H 0.05 1.18 7.80 -51.93 -0.40 0.77 16 30 H 0.03 0.58 6.06 -51.93 -0.31 0.27 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.11 2.82 5.95 -51.93 -0.31 2.51 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.11 0.95 7.65 -51.93 -0.40 0.56 16 36 H 0.11 0.98 7.67 -51.92 -0.40 0.58 16 37 H 0.16 0.88 6.29 -52.49 -0.33 0.55 16 38 H 0.16 1.09 7.60 -52.49 -0.40 0.69 16 39 H 0.07 0.32 7.66 -51.93 -0.40 -0.08 16 40 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.31 7.66 -51.92 -0.40 -0.08 16 42 H 0.16 1.28 6.30 -52.49 -0.33 0.95 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -31.87 362.14 -7.32 -39.19 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.86 Total: -0.44 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.03 Total: -5.53 kcal Atomic # 7 Polarization: -23.26 SS G_CDS: 0.78 Total: -22.48 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -2.64 Total: -31.19 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.87 -7.32 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.523 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds