Wall clock time and date at job start Tue Mar 31 2020 22:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46603 * 2 1 4 4 H 1.09000 * 109.47107 * 55.00163 * 3 2 1 5 5 C 1.50704 * 109.46853 * 174.99561 * 3 2 1 6 6 H 1.08007 * 119.99981 * 119.99989 * 5 3 2 7 7 C 1.37878 * 120.00099 * 300.00497 * 5 3 2 8 8 N 1.31512 * 120.00237 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99802 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47330 * 89.99942 * 9 7 5 11 11 H 1.48499 * 109.47403 * 209.99668 * 9 7 5 12 12 H 1.48503 * 109.47391 * 329.99632 * 9 7 5 13 13 O 1.45198 * 109.47272 * 294.99799 * 3 2 1 14 14 C 1.34219 * 117.00085 * 90.00228 * 13 3 2 15 15 O 1.20830 * 120.00292 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00044 * 180.02562 * 14 13 3 17 17 O 1.42907 * 109.47413 * 180.02562 * 16 14 13 18 18 C 1.35897 * 117.00227 * 180.02562 * 17 16 14 19 19 C 1.38793 * 120.02676 * 0.24823 * 18 17 16 20 20 C 1.38151 * 120.05371 * 180.28033 * 19 18 17 21 21 C 1.38202 * 120.10743 * 359.44349 * 20 19 18 22 22 N 1.48009 * 119.97090 * 180.27908 * 21 20 19 23 23 O 1.21801 * 120.00276 * 0.02562 * 22 21 20 24 24 O 1.21800 * 119.99814 * 180.02562 * 22 21 20 25 25 C 1.38752 * 120.05339 * 0.30560 * 21 20 19 26 26 O 1.35892 * 120.02402 * 180.02562 * 25 21 20 27 27 C 1.42899 * 117.00153 * 180.02562 * 26 25 21 28 28 C 1.38607 * 120.02390 * 180.02562 * 18 17 16 29 29 H 1.08993 * 109.47668 * 300.00089 * 1 2 3 30 30 H 1.09000 * 109.46935 * 60.00309 * 1 2 3 31 31 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47405 * 240.00551 * 2 1 3 33 33 H 1.09000 * 109.46935 * 119.99691 * 2 1 3 34 34 H 0.96993 * 120.00406 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47495 * 59.99849 * 16 14 13 36 36 H 1.09010 * 109.47126 * 299.99830 * 16 14 13 37 37 H 1.08001 * 119.97505 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.94930 * 179.72919 * 20 19 18 39 39 H 1.09000 * 109.47457 * 59.99211 * 27 26 25 40 40 H 1.08996 * 109.47816 * 180.02562 * 27 26 25 41 41 H 1.09010 * 109.46516 * 299.99722 * 27 26 25 42 42 H 1.08002 * 120.05990 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0048 0.8802 1.3813 10 1 6.4426 2.1131 2.0839 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8397 0.0271 13 8 1.6558 2.0917 -1.2407 14 6 0.4727 2.7254 -1.2560 15 8 -0.2190 2.7377 -0.2653 16 6 0.0069 3.4215 -2.5088 17 8 -1.2710 4.0172 -2.2757 18 6 -1.8371 4.6888 -3.3127 19 6 -1.1777 4.7680 -4.5315 20 6 -1.7500 5.4554 -5.5844 21 6 -2.9852 6.0561 -5.4305 22 7 -3.5983 6.7866 -6.5623 23 8 -3.0145 6.8578 -7.6290 24 8 -4.6866 7.3165 -6.4271 25 6 -3.6506 5.9753 -4.2156 26 8 -4.8653 6.5657 -4.0651 27 6 -5.4925 6.4427 -2.7870 28 6 -3.0754 5.2913 -3.1555 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8291 -0.0603 2.9503 35 1 -0.0720 2.6969 -3.3192 36 1 0.7239 4.1958 -2.7822 37 1 -0.2146 4.2953 -4.6557 38 1 -1.2335 5.5197 -6.5307 39 1 -4.8538 6.8883 -2.0244 40 1 -6.4533 6.9572 -2.8027 41 1 -5.6491 5.3883 -2.5591 42 1 -3.5915 5.2281 -2.2089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:21 Heat of formation + Delta-G solvation = -152.875343 kcal Electronic energy + Delta-G solvation = -28850.161028 eV Core-core repulsion = 24378.496225 eV Total energy + Delta-G solvation = -4471.664804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.20424 -41.99889 -41.35829 -40.32792 -38.19872 -37.55464 -37.40646 -35.55601 -33.42635 -32.76011 -31.78947 -30.33942 -29.07132 -28.55980 -26.98734 -25.30408 -24.02395 -23.56532 -22.57318 -21.40849 -20.65740 -19.88089 -19.67960 -19.07194 -18.57418 -18.54472 -17.93662 -17.86485 -17.52075 -17.11725 -16.99141 -16.50793 -16.40078 -15.79558 -15.45969 -14.85237 -14.75408 -14.43650 -14.39877 -14.18358 -13.78689 -13.40349 -13.31300 -13.15874 -12.86377 -12.83494 -12.71881 -12.62993 -12.59268 -12.55835 -12.18259 -12.14647 -12.11282 -12.07528 -11.76490 -11.51283 -11.30574 -10.85000 -10.54579 -10.17263 -9.82639 -8.28536 -6.45214 -1.14445 -0.15737 0.27843 0.45375 1.01376 1.21058 1.43995 1.44415 1.56245 1.83644 2.10041 2.29033 2.48793 3.02073 3.18589 3.37915 3.61956 3.68850 3.74260 3.92761 3.96420 3.99650 4.28088 4.28772 4.36149 4.38192 4.38344 4.53990 4.61275 4.68026 4.77083 4.80548 4.93856 5.07160 5.18535 5.30236 5.34732 5.50632 5.65533 5.73118 5.88501 5.95195 6.08103 6.59203 6.61370 6.88858 7.25972 8.77991 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.002095 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.597299 B =13364.210956 C =14050.767463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C 0.227 3.773 4 H 0.009 0.991 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.979 3.021 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.261 1.261 13 O -0.353 6.353 14 C 0.445 3.555 15 O -0.530 6.530 16 C 0.067 3.933 17 O -0.298 6.298 18 C 0.225 3.775 19 C -0.231 4.231 20 C 0.030 3.970 21 C -0.141 4.141 22 N 0.046 4.954 23 O -0.191 6.191 24 O -0.185 6.185 25 C 0.230 3.770 26 O -0.298 6.298 27 C 0.007 3.993 28 C -0.251 4.251 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.270 0.730 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.191 0.809 38 H 0.185 0.815 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.075 0.925 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 8.369 -12.746 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.026 0.974 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.185 1.185 13 O -0.269 6.269 14 C 0.288 3.712 15 O -0.420 6.420 16 C -0.007 4.007 17 O -0.209 6.209 18 C 0.177 3.823 19 C -0.250 4.250 20 C 0.011 3.989 21 C -0.227 4.227 22 N 0.556 4.444 23 O -0.401 6.401 24 O -0.396 6.396 25 C 0.180 3.820 26 O -0.208 6.208 27 C -0.087 4.087 28 C -0.271 4.271 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.208 0.792 38 H 0.202 0.798 39 H 0.094 0.906 40 H 0.148 0.852 41 H 0.094 0.906 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.563 7.995 -11.652 18.259 hybrid contribution 0.503 0.018 0.600 0.783 sum -11.060 8.013 -11.052 17.569 Atomic orbital electron populations 1.21721 0.96285 1.00657 1.00124 1.21889 0.94403 0.98027 1.02614 1.20439 0.94575 0.89267 0.78299 0.97357 1.21332 0.90378 1.39915 1.06921 0.91110 1.25775 1.04032 0.93956 0.94486 1.70003 1.37431 1.37942 1.09858 0.85235 0.77928 0.77841 0.78756 1.19983 1.20398 1.18498 1.86415 1.34796 1.62855 1.42871 1.23560 0.80359 0.77053 0.90200 1.90672 1.55730 1.58382 1.37218 1.22387 0.84216 1.00495 0.93639 1.86126 1.34004 1.64857 1.35943 1.19111 0.90694 0.86209 0.86323 1.21579 1.04860 1.07570 0.91000 1.20966 0.88929 0.87757 1.01247 1.20676 1.00511 1.14978 0.86510 1.43516 1.00189 0.98750 1.01897 1.94484 1.64105 1.66172 1.15298 1.94568 1.07797 1.47575 1.89696 1.18318 0.85198 0.88115 0.90387 1.86420 1.27740 1.68871 1.37758 1.23673 0.99383 1.04208 0.81397 1.20488 0.97656 1.07927 1.01027 0.94772 0.94128 0.92084 0.93067 0.89669 0.92068 0.83311 0.83563 0.79234 0.79776 0.90642 0.85218 0.90596 0.81124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.57 71.98 0.62 -4.66 16 2 C -0.13 -6.12 5.49 30.60 0.17 -5.95 16 3 C 0.23 11.38 2.25 29.85 0.07 11.44 16 4 H 0.01 0.49 7.16 -2.39 -0.02 0.48 16 5 C -0.55 -28.91 8.90 25.60 0.23 -28.69 16 6 H 0.07 3.62 7.81 -2.91 -0.02 3.59 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -50.10 11.29 21.45 0.24 -49.86 16 9 Si 0.98 40.66 29.54 68.60 2.03 42.69 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 12 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 13 O -0.35 -14.53 9.81 -51.31 -0.50 -15.03 16 14 C 0.45 15.52 6.49 71.24 0.46 15.98 16 15 O -0.53 -22.65 13.64 28.38 0.39 -22.26 16 16 C 0.07 1.33 5.33 71.24 0.38 1.71 16 17 O -0.30 -6.53 9.67 -73.31 -0.71 -7.24 16 18 C 0.22 3.81 6.68 22.49 0.15 3.96 16 19 C -0.23 -2.77 9.04 22.38 0.20 -2.57 16 20 C 0.03 0.42 9.55 22.24 0.21 0.64 16 21 C -0.14 -2.90 6.87 36.49 0.25 -2.65 16 22 N 0.05 1.21 4.45 -46.20 -0.21 1.00 16 23 O -0.19 -5.02 18.44 18.89 0.35 -4.67 16 24 O -0.19 -5.40 17.23 25.62 0.44 -4.96 16 25 C 0.23 4.47 6.67 22.49 0.15 4.62 16 26 O -0.30 -5.78 8.50 -71.15 -0.60 -6.38 16 27 C 0.01 0.07 9.81 113.37 1.11 1.18 16 28 C -0.25 -4.28 8.97 22.46 0.20 -4.08 16 29 H 0.03 1.49 7.80 -2.39 -0.02 1.47 16 30 H 0.04 1.52 6.06 -2.39 -0.01 1.51 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.09 4.43 5.95 -2.39 -0.01 4.42 16 34 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.15 1.81 7.65 -2.39 -0.02 1.79 16 36 H 0.15 1.89 7.67 -2.38 -0.02 1.87 16 37 H 0.19 1.00 6.29 -2.91 -0.02 0.98 16 38 H 0.19 1.81 7.60 -2.91 -0.02 1.79 16 39 H 0.07 0.64 7.66 -2.39 -0.02 0.63 16 40 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.64 7.66 -2.38 -0.02 0.62 16 42 H 0.17 2.47 6.30 -2.91 -0.02 2.45 16 Total: -1.00 -72.35 362.14 7.14 -65.20 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.07 Total: 9.22 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 4.65 Total: -7.72 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.04 Total: -48.86 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -0.64 Total: -60.53 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -72.35 7.14 -65.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.673 kcal (2) G-P(sol) polarization free energy of solvation -72.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds