Wall clock time and date at job start Tue Mar 31 2020 22:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46994 * 2 1 4 4 H 1.08997 * 109.47503 * 305.00063 * 3 2 1 5 5 C 1.50703 * 109.46982 * 185.00065 * 3 2 1 6 6 H 1.07998 * 120.00463 * 240.00653 * 5 3 2 7 7 C 1.37882 * 119.99909 * 59.99919 * 5 3 2 8 8 N 1.31507 * 119.99808 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99850 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47101 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46685 * 120.00288 * 9 7 5 12 12 H 1.48494 * 109.47326 * 239.99840 * 9 7 5 13 13 O 1.45201 * 109.47129 * 65.00636 * 3 2 1 14 14 C 1.34225 * 116.99505 * 269.99327 * 13 3 2 15 15 O 1.20826 * 120.00475 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99987 * 179.97438 * 14 13 3 17 17 O 1.42900 * 109.46820 * 180.02562 * 16 14 13 18 18 C 1.35906 * 116.99660 * 180.02562 * 17 16 14 19 19 C 1.38792 * 120.02573 * 359.97438 * 18 17 16 20 20 C 1.38157 * 120.05513 * 180.02562 * 19 18 17 21 21 C 1.38196 * 120.10692 * 0.28192 * 20 19 18 22 22 N 1.48005 * 119.97147 * 179.70391 * 21 20 19 23 23 O 1.21796 * 119.99896 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99787 * 179.97438 * 22 21 20 25 25 C 1.38753 * 120.05313 * 359.43827 * 21 20 19 26 26 O 1.35898 * 120.02712 * 180.29995 * 25 21 20 27 27 C 1.42902 * 116.99980 * 180.25774 * 26 25 21 28 28 C 1.38612 * 120.02775 * 180.02562 * 18 17 16 29 29 H 1.08995 * 109.47091 * 59.99647 * 1 2 3 30 30 H 1.08995 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46838 * 300.00316 * 1 2 3 32 32 H 1.09000 * 109.46805 * 240.00330 * 2 1 3 33 33 H 1.09004 * 109.47197 * 120.00073 * 2 1 3 34 34 H 0.97003 * 119.99717 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.46829 * 60.00793 * 16 14 13 36 36 H 1.08994 * 109.46862 * 300.00300 * 16 14 13 37 37 H 1.08007 * 119.97428 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.94400 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47355 * 60.00386 * 27 26 25 40 40 H 1.08997 * 109.47055 * 179.97438 * 27 26 25 41 41 H 1.08995 * 109.46983 * 300.00284 * 27 26 25 42 42 H 1.08002 * 120.05249 * 359.95586 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8812 -1.3819 10 1 6.5987 1.5462 -0.1943 11 1 6.4970 -0.5176 -1.4631 12 1 6.3990 1.6166 -2.6103 13 8 1.6560 2.0916 1.2408 14 6 0.4729 2.7254 1.2560 15 8 -0.2192 2.7371 0.2656 16 6 0.0071 3.4216 2.5089 17 8 -1.2712 4.0164 2.2760 18 6 -1.8369 4.6888 3.3128 19 6 -1.1746 4.7735 4.5296 20 6 -1.7493 5.4564 5.5841 21 6 -2.9872 6.0518 5.4321 22 7 -3.6030 6.7770 6.5658 23 8 -3.0191 6.8486 7.6323 24 8 -4.6938 7.3023 6.4323 25 6 -3.6506 5.9748 4.2159 26 8 -4.8651 6.5657 4.0652 27 6 -5.4930 6.4414 2.7875 28 6 -3.0762 5.2896 3.1562 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8292 -0.0603 -2.9503 35 1 0.7241 4.1958 2.7822 36 1 -0.0719 2.6970 3.3192 37 1 -0.2095 4.3044 4.6524 38 1 -1.2326 5.5209 6.5303 39 1 -5.6503 5.3869 2.5610 40 1 -6.4535 6.9564 2.8031 41 1 -4.8543 6.8857 2.0242 42 1 -3.5931 5.2247 2.2102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:24 Heat of formation + Delta-G solvation = -152.914130 kcal Electronic energy + Delta-G solvation = -28850.419929 eV Core-core repulsion = 24378.753444 eV Total energy + Delta-G solvation = -4471.666486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.20513 -41.99863 -41.35793 -40.32712 -38.19869 -37.55506 -37.40706 -35.55668 -33.42683 -32.76023 -31.78902 -30.33905 -29.07234 -28.55998 -26.98752 -25.30531 -24.02386 -23.56516 -22.57300 -21.40863 -20.65747 -19.88098 -19.67964 -19.07274 -18.57343 -18.54675 -17.93565 -17.86601 -17.52093 -17.11917 -16.99161 -16.50671 -16.39946 -15.79566 -15.45833 -14.85234 -14.75796 -14.43616 -14.40021 -14.18281 -13.78738 -13.40268 -13.32035 -13.14853 -12.86691 -12.85631 -12.71948 -12.62403 -12.59278 -12.55134 -12.18264 -12.13771 -12.11283 -12.07528 -11.76999 -11.50587 -11.30397 -10.85126 -10.54772 -10.17275 -9.82639 -8.28793 -6.45295 -1.14440 -0.15737 0.27857 0.45402 1.01418 1.21083 1.42860 1.44408 1.57307 1.83664 2.10046 2.29055 2.48714 3.01918 3.18597 3.37917 3.61970 3.68855 3.74268 3.92790 3.96447 3.99668 4.28141 4.28799 4.36099 4.38173 4.38331 4.53972 4.61265 4.68040 4.77091 4.80531 4.93850 5.07132 5.18513 5.30236 5.34687 5.50834 5.65491 5.73101 5.88492 5.95175 6.08036 6.59369 6.61412 6.88906 7.25936 8.77949 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.002095 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.217525 B =13364.672493 C =14050.551170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C 0.227 3.773 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.979 3.021 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.279 1.279 13 O -0.353 6.353 14 C 0.445 3.555 15 O -0.530 6.530 16 C 0.067 3.933 17 O -0.298 6.298 18 C 0.225 3.775 19 C -0.231 4.231 20 C 0.030 3.970 21 C -0.141 4.141 22 N 0.046 4.954 23 O -0.191 6.191 24 O -0.185 6.185 25 C 0.230 3.770 26 O -0.298 6.298 27 C 0.007 3.993 28 C -0.251 4.251 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.270 0.730 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.191 0.809 38 H 0.185 0.815 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.075 0.925 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 8.393 12.745 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.027 0.973 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.205 1.205 13 O -0.269 6.269 14 C 0.288 3.712 15 O -0.420 6.420 16 C -0.007 4.007 17 O -0.209 6.209 18 C 0.177 3.823 19 C -0.250 4.250 20 C 0.011 3.989 21 C -0.227 4.227 22 N 0.557 4.443 23 O -0.401 6.401 24 O -0.396 6.396 25 C 0.180 3.820 26 O -0.208 6.208 27 C -0.087 4.087 28 C -0.271 4.271 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.208 0.792 38 H 0.202 0.798 39 H 0.094 0.906 40 H 0.148 0.852 41 H 0.094 0.906 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.558 8.026 11.652 18.269 hybrid contribution 0.500 0.001 -0.604 0.784 sum -11.057 8.028 11.047 17.571 Atomic orbital electron populations 1.21722 0.96284 1.00653 1.00127 1.21890 0.94406 0.98029 1.02612 1.20443 0.94591 0.89266 0.78304 0.97341 1.21358 0.90365 1.39830 1.06880 0.91123 1.25778 1.04032 0.93982 0.94486 1.70013 1.37347 1.37997 1.09889 0.85184 0.77942 0.78213 0.78389 1.18510 1.19942 1.20490 1.86419 1.34807 1.62850 1.42863 1.23562 0.80360 0.77057 0.90196 1.90671 1.55708 1.58383 1.37233 1.22386 0.84210 1.00502 0.93638 1.86128 1.33970 1.64855 1.35977 1.19114 0.90709 0.86200 0.86318 1.21582 1.04796 1.07609 0.91024 1.20966 0.88900 0.87785 1.01246 1.20675 1.00448 1.15156 0.86392 1.43512 1.00211 0.98713 1.01913 1.94483 1.64222 1.65980 1.15369 1.94569 1.07586 1.47721 1.89765 1.18318 0.85213 0.88110 0.90382 1.86422 1.27759 1.68810 1.37802 1.23671 0.99367 1.04208 0.81413 1.20488 0.97668 1.07874 1.01063 0.94771 0.92089 0.94126 0.89674 0.93068 0.92078 0.83557 0.83324 0.79233 0.79775 0.90597 0.85221 0.90640 0.81124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.57 71.98 0.62 -4.66 16 2 C -0.13 -6.12 5.49 30.59 0.17 -5.95 16 3 C 0.23 11.36 2.25 29.85 0.07 11.43 16 4 H 0.01 0.50 7.16 -2.39 -0.02 0.49 16 5 C -0.55 -28.85 8.90 25.60 0.23 -28.62 16 6 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -50.08 11.29 21.45 0.24 -49.84 16 9 Si 0.98 40.68 29.54 68.60 2.03 42.70 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 11 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 13 O -0.35 -14.52 9.81 -51.37 -0.50 -15.03 16 14 C 0.45 15.52 6.49 71.24 0.46 15.98 16 15 O -0.53 -22.64 13.64 28.40 0.39 -22.25 16 16 C 0.07 1.33 5.33 71.24 0.38 1.71 16 17 O -0.30 -6.53 9.67 -73.41 -0.71 -7.24 16 18 C 0.22 3.81 6.68 22.49 0.15 3.96 16 19 C -0.23 -2.77 9.04 22.38 0.20 -2.57 16 20 C 0.03 0.42 9.54 22.24 0.21 0.64 16 21 C -0.14 -2.90 6.87 36.49 0.25 -2.65 16 22 N 0.05 1.21 4.45 -46.20 -0.21 1.00 16 23 O -0.19 -5.01 18.44 18.89 0.35 -4.66 16 24 O -0.19 -5.40 17.23 25.62 0.44 -4.96 16 25 C 0.23 4.47 6.67 22.49 0.15 4.62 16 26 O -0.30 -5.78 8.50 -71.21 -0.61 -6.38 16 27 C 0.01 0.07 9.81 113.37 1.11 1.18 16 28 C -0.25 -4.28 8.97 22.46 0.20 -4.08 16 29 H 0.03 1.49 7.80 -2.39 -0.02 1.47 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.52 6.06 -2.38 -0.01 1.51 16 32 H 0.09 4.43 5.95 -2.39 -0.01 4.42 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.15 1.89 7.66 -2.39 -0.02 1.87 16 36 H 0.15 1.81 7.66 -2.39 -0.02 1.79 16 37 H 0.19 1.00 6.29 -2.91 -0.02 0.98 16 38 H 0.19 1.81 7.60 -2.91 -0.02 1.79 16 39 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 40 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.64 7.66 -2.39 -0.02 0.63 16 42 H 0.17 2.47 6.30 -2.91 -0.02 2.45 16 Total: -1.00 -72.37 362.14 7.14 -65.22 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.07 Total: 9.12 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.65 Total: -7.69 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.04 Total: -48.84 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -0.64 Total: -60.52 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Total: -72.37 7.14 -65.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.692 kcal (2) G-P(sol) polarization free energy of solvation -72.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds