Wall clock time and date at job start Tue Mar 31 2020 22:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38229 * 120.36720 * 2 1 4 4 N 1.31894 * 120.94878 * 179.97438 * 3 2 1 5 5 C 1.31887 * 121.78184 * 0.02562 * 4 3 2 6 6 Cl 1.73598 * 119.68843 * 179.97438 * 5 4 3 7 7 C 1.39061 * 120.62588 * 0.02562 * 5 4 3 8 8 N 1.39791 * 120.49665 * 180.02562 * 7 5 4 9 9 C 1.34780 * 120.00371 * 146.95581 * 8 7 5 10 10 O 1.21386 * 119.99302 * 5.11863 * 9 8 7 11 11 C 1.49340 * 120.00297 * 185.12058 * 9 8 7 12 12 O 1.21360 * 120.00282 * 0.02562 * 11 9 8 13 13 N 1.34785 * 119.99937 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99765 * 354.59642 * 13 11 9 15 15 C 1.50697 * 109.47259 * 83.66954 * 14 13 11 16 16 H 1.07997 * 119.99814 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99812 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00407 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99563 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47466 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46767 * 120.00476 * 19 17 15 22 22 H 1.48506 * 109.46970 * 240.00131 * 19 17 15 23 23 C 1.46504 * 119.99944 * 174.59413 * 13 11 9 24 24 C 1.53001 * 109.47206 * 304.42081 * 23 13 11 25 25 C 1.52997 * 109.46771 * 64.41976 * 23 13 11 26 26 C 1.38540 * 120.36231 * 179.72198 * 2 1 3 27 27 H 1.09002 * 109.46509 * 90.00031 * 1 2 3 28 28 H 1.08996 * 109.47016 * 209.99956 * 1 2 3 29 29 H 1.08995 * 109.47015 * 330.00189 * 1 2 3 30 30 H 1.08005 * 119.52741 * 0.02562 * 3 2 1 31 31 H 0.96997 * 120.00065 * 326.94858 * 8 7 5 32 32 H 1.09004 * 109.46778 * 203.66653 * 14 13 11 33 33 H 1.09000 * 109.47264 * 323.66595 * 14 13 11 34 34 H 0.97001 * 120.00745 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.47044 * 184.41924 * 23 13 11 36 36 H 1.09000 * 109.47048 * 65.73500 * 24 23 13 37 37 H 1.08997 * 109.46910 * 185.73500 * 24 23 13 38 38 H 1.08998 * 109.46874 * 305.73766 * 24 23 13 39 39 H 1.08993 * 109.47582 * 64.65031 * 25 23 13 40 40 H 1.09007 * 109.47080 * 184.64839 * 25 23 13 41 41 H 1.09003 * 109.47664 * 304.64749 * 25 23 13 42 42 H 1.07995 * 120.81992 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1926 0.0000 4 7 3.5247 1.2060 0.0005 5 6 4.2307 0.0920 0.0005 6 17 5.9648 0.1730 0.0005 7 6 3.5991 -1.1469 -0.0005 8 7 4.3501 -2.3260 0.0000 9 6 3.8861 -3.4202 0.6357 10 8 2.7766 -3.4113 1.1278 11 6 4.7371 -4.6434 0.7345 12 8 5.8467 -4.6521 0.2429 13 7 4.2729 -5.7378 1.3697 14 6 2.9843 -5.6898 2.0648 15 6 1.8717 -5.9330 1.0778 16 1 2.1016 -6.1056 0.0368 17 6 0.5604 -5.9352 1.5039 18 7 0.2805 -5.7245 2.7715 19 14 -0.8185 -6.2374 0.2805 20 1 -0.2431 -6.4463 -1.0724 21 1 -1.5830 -7.4446 0.6847 22 1 -1.7258 -5.0619 0.2570 23 6 5.0571 -6.9753 1.3650 24 6 5.3557 -7.3844 -0.0788 25 6 6.3722 -6.7485 2.1132 26 6 2.2073 -1.1954 0.0058 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6641 2.1270 0.0004 31 1 5.2050 -2.3567 -0.4571 32 1 2.9592 -6.4586 2.8372 33 1 2.8552 -4.7095 2.5236 34 1 -0.6420 -5.7256 3.0712 35 1 4.4908 -7.7661 1.8569 36 1 6.0072 -6.6418 -0.5394 37 1 5.8498 -8.3559 -0.0863 38 1 4.4228 -7.4468 -0.6390 39 1 6.1621 -6.5380 3.1618 40 1 6.9912 -7.6427 2.0392 41 1 6.9004 -5.9034 1.6718 42 1 1.6867 -2.1416 0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787897946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:03 Heat of formation + Delta-G solvation = -26.860968 kcal Electronic energy + Delta-G solvation = -28022.297108 eV Core-core repulsion = 24029.098614 eV Total energy + Delta-G solvation = -3993.198494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00161 -39.92867 -38.26421 -36.72928 -35.98352 -34.79800 -33.52263 -33.05585 -31.45297 -30.35802 -27.26115 -27.09355 -26.78983 -25.17832 -23.70128 -22.78331 -22.02070 -20.93025 -19.30655 -17.53989 -17.21602 -16.89669 -16.64467 -16.44263 -15.49720 -15.32123 -14.93220 -14.62527 -14.33689 -14.04216 -13.99141 -13.59288 -13.20935 -13.16169 -13.10409 -12.80451 -12.72860 -12.31017 -12.01675 -11.87464 -11.65461 -11.56100 -11.54623 -11.33674 -11.09643 -10.99443 -10.95233 -10.85705 -10.75441 -10.29917 -9.86314 -9.78441 -9.70976 -9.23732 -8.71897 -8.36573 -8.23937 -7.90169 -6.09768 -4.11965 0.79988 1.15860 1.78126 2.02634 2.68875 3.22604 3.31066 3.34246 3.53631 3.80983 3.92298 4.37493 4.49310 4.64971 4.78878 4.99309 5.02441 5.04476 5.26442 5.36311 5.53234 5.57487 5.61529 5.67803 5.86271 5.95997 5.96198 6.02925 6.16681 6.21212 6.29107 6.30591 6.55455 6.64885 6.66889 6.73360 7.22311 7.30029 7.43343 7.65214 7.79067 8.01648 8.11473 8.20502 8.58467 8.88508 9.50473 10.98996 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009165 B = 0.005293 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.306312 B = 5288.919446 C = 7824.921749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C 0.089 3.911 4 N -0.457 5.457 5 C 0.133 3.867 6 Cl -0.032 7.032 7 C 0.136 3.864 8 N -0.655 5.655 9 C 0.489 3.511 10 O -0.427 6.427 11 C 0.512 3.488 12 O -0.552 6.552 13 N -0.553 5.553 14 C 0.227 3.773 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.069 3.931 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.144 3.856 24 C -0.166 4.166 25 C -0.167 4.167 26 C -0.074 4.074 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.164 0.836 31 H 0.420 0.580 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 7.920 -4.768 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.112 4.112 3 C -0.070 4.070 4 N -0.167 5.167 5 C -0.034 4.034 6 Cl -0.004 7.004 7 C 0.036 3.964 8 N -0.305 5.305 9 C 0.270 3.730 10 O -0.294 6.294 11 C 0.294 3.706 12 O -0.433 6.433 13 N -0.283 5.283 14 C 0.108 3.892 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.133 4.133 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.041 3.959 24 C -0.224 4.224 25 C -0.225 4.225 26 C -0.102 4.102 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.181 0.819 31 H 0.259 0.741 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.745 8.583 -4.445 11.244 hybrid contribution -0.796 -0.942 -0.791 1.465 sum 4.949 7.641 -5.236 10.502 Atomic orbital electron populations 1.20769 0.89375 1.03912 1.02892 1.20973 0.98235 0.93104 0.98855 1.22460 0.87923 0.97973 0.98616 1.66922 1.08657 1.28859 1.12230 1.21377 0.87454 0.88696 1.05859 1.98393 1.06826 1.98444 1.96718 1.18288 0.91660 0.85357 1.01054 1.43256 1.24180 1.08895 1.54127 1.20662 0.88040 0.84360 0.79895 1.90972 1.17540 1.80377 1.40476 1.19518 0.86056 0.84389 0.80676 1.90614 1.19999 1.83456 1.49216 1.48382 1.22385 1.08805 1.48771 1.19986 0.76806 0.99921 0.92440 1.21218 0.90703 1.48567 0.94560 0.92728 1.24795 0.98354 0.95084 0.95062 1.69919 1.19238 1.49385 1.14270 0.86575 0.82303 0.77847 0.81470 1.19946 1.21028 1.20913 1.21061 0.92043 0.86055 0.96781 1.22167 1.02488 1.01270 0.96476 1.22206 0.97371 1.02816 1.00121 1.21961 0.91301 1.00755 0.96159 0.90565 0.90282 0.90899 0.81909 0.74106 0.94889 0.91834 0.92869 0.89067 0.90741 0.92416 0.92289 0.92894 0.92203 0.90713 0.81252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.04 36.01 0.36 -0.82 16 2 C -0.11 -1.43 5.89 -104.51 -0.62 -2.04 16 3 C 0.09 1.10 10.85 -17.53 -0.19 0.91 16 4 N -0.46 -6.64 10.33 -10.19 -0.11 -6.74 16 5 C 0.13 2.01 7.30 -17.22 -0.13 1.88 16 6 Cl -0.03 -0.44 28.09 -51.86 -1.46 -1.89 16 7 C 0.14 2.17 6.36 -83.54 -0.53 1.64 16 8 N -0.66 -10.76 5.07 -10.17 -0.05 -10.81 16 9 C 0.49 9.48 7.59 -11.64 -0.09 9.40 16 10 O -0.43 -9.43 9.44 5.47 0.05 -9.38 16 11 C 0.51 10.08 7.08 -11.63 -0.08 10.00 16 12 O -0.55 -10.57 12.76 5.49 0.07 -10.50 16 13 N -0.55 -11.17 2.42 -168.02 -0.41 -11.57 16 14 C 0.23 5.39 4.75 -5.20 -0.02 5.36 16 15 C -0.51 -13.17 7.78 -34.44 -0.27 -13.44 16 16 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -24.68 13.29 55.43 0.74 -23.95 16 19 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.14 2.47 3.27 -67.93 -0.22 2.24 16 24 C -0.17 -2.64 8.95 37.16 0.33 -2.31 16 25 C -0.17 -2.51 9.24 37.16 0.34 -2.16 16 26 C -0.07 -1.18 8.51 -39.09 -0.33 -1.51 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.16 1.45 8.06 -52.48 -0.42 1.02 16 31 H 0.42 6.27 7.51 -40.82 -0.31 5.96 16 32 H 0.03 0.82 7.83 -51.93 -0.41 0.41 16 33 H 0.06 1.64 5.85 -51.93 -0.30 1.34 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.09 1.55 7.75 -51.93 -0.40 1.15 16 36 H 0.07 1.25 6.24 -51.93 -0.32 0.93 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.22 6.21 -51.93 -0.32 0.90 16 42 H 0.17 3.06 6.13 -52.49 -0.32 2.74 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -28.85 363.90 -7.55 -36.40 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.31 Total: 6.50 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -1.54 Total: 10.89 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.17 Total: -53.07 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.12 Total: -19.88 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.46 Total: -1.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.85 -7.55 -36.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787897946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.541 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds