Wall clock time and date at job start Tue Mar 31 2020 22:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38229 * 120.36720 * 2 1 4 4 N 1.31894 * 120.94878 * 179.97438 * 3 2 1 5 5 C 1.31887 * 121.78184 * 0.02562 * 4 3 2 6 6 Cl 1.73598 * 119.68843 * 179.97438 * 5 4 3 7 7 C 1.39061 * 120.62588 * 0.02562 * 5 4 3 8 8 N 1.39791 * 120.49665 * 180.02562 * 7 5 4 9 9 C 1.34780 * 120.00371 * 146.95581 * 8 7 5 10 10 O 1.21386 * 119.99302 * 5.11863 * 9 8 7 11 11 C 1.49340 * 120.00297 * 185.12058 * 9 8 7 12 12 O 1.21360 * 120.00282 * 0.02562 * 11 9 8 13 13 N 1.34785 * 119.99937 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99765 * 354.59642 * 13 11 9 15 15 C 1.50697 * 109.47259 * 83.66954 * 14 13 11 16 16 H 1.07997 * 119.99814 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99812 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00407 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99563 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47466 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46767 * 120.00476 * 19 17 15 22 22 H 1.48506 * 109.46970 * 240.00131 * 19 17 15 23 23 C 1.46504 * 119.99944 * 174.59413 * 13 11 9 24 24 C 1.53001 * 109.47206 * 304.42081 * 23 13 11 25 25 C 1.52997 * 109.46771 * 64.41976 * 23 13 11 26 26 C 1.38540 * 120.36231 * 179.72198 * 2 1 3 27 27 H 1.09002 * 109.46509 * 90.00031 * 1 2 3 28 28 H 1.08996 * 109.47016 * 209.99956 * 1 2 3 29 29 H 1.08995 * 109.47015 * 330.00189 * 1 2 3 30 30 H 1.08005 * 119.52741 * 0.02562 * 3 2 1 31 31 H 0.96997 * 120.00065 * 326.94858 * 8 7 5 32 32 H 1.09004 * 109.46778 * 203.66653 * 14 13 11 33 33 H 1.09000 * 109.47264 * 323.66595 * 14 13 11 34 34 H 0.97001 * 120.00745 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.47044 * 184.41924 * 23 13 11 36 36 H 1.09000 * 109.47048 * 65.73500 * 24 23 13 37 37 H 1.08997 * 109.46910 * 185.73500 * 24 23 13 38 38 H 1.08998 * 109.46874 * 305.73766 * 24 23 13 39 39 H 1.08993 * 109.47582 * 64.65031 * 25 23 13 40 40 H 1.09007 * 109.47080 * 184.64839 * 25 23 13 41 41 H 1.09003 * 109.47664 * 304.64749 * 25 23 13 42 42 H 1.07995 * 120.81992 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1926 0.0000 4 7 3.5247 1.2060 0.0005 5 6 4.2307 0.0920 0.0005 6 17 5.9648 0.1730 0.0005 7 6 3.5991 -1.1469 -0.0005 8 7 4.3501 -2.3260 0.0000 9 6 3.8861 -3.4202 0.6357 10 8 2.7766 -3.4113 1.1278 11 6 4.7371 -4.6434 0.7345 12 8 5.8467 -4.6521 0.2429 13 7 4.2729 -5.7378 1.3697 14 6 2.9843 -5.6898 2.0648 15 6 1.8717 -5.9330 1.0778 16 1 2.1016 -6.1056 0.0368 17 6 0.5604 -5.9352 1.5039 18 7 0.2805 -5.7245 2.7715 19 14 -0.8185 -6.2374 0.2805 20 1 -0.2431 -6.4463 -1.0724 21 1 -1.5830 -7.4446 0.6847 22 1 -1.7258 -5.0619 0.2570 23 6 5.0571 -6.9753 1.3650 24 6 5.3557 -7.3844 -0.0788 25 6 6.3722 -6.7485 2.1132 26 6 2.2073 -1.1954 0.0058 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6641 2.1270 0.0004 31 1 5.2050 -2.3567 -0.4571 32 1 2.9592 -6.4586 2.8372 33 1 2.8552 -4.7095 2.5236 34 1 -0.6420 -5.7256 3.0712 35 1 4.4908 -7.7661 1.8569 36 1 6.0072 -6.6418 -0.5394 37 1 5.8498 -8.3559 -0.0863 38 1 4.4228 -7.4468 -0.6390 39 1 6.1621 -6.5380 3.1618 40 1 6.9912 -7.6427 2.0392 41 1 6.9004 -5.9034 1.6718 42 1 1.6867 -2.1416 0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787897946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:03 Heat of formation + Delta-G solvation = -44.009751 kcal Electronic energy + Delta-G solvation = -28023.040735 eV Core-core repulsion = 24029.098614 eV Total energy + Delta-G solvation = -3993.942122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.36669 -41.27974 -39.72309 -37.86049 -37.53762 -36.18233 -34.93490 -34.57153 -33.09222 -31.59518 -28.99240 -28.24767 -28.04991 -26.63388 -25.05823 -24.53134 -23.27060 -22.26533 -20.71995 -18.98325 -18.59551 -18.42025 -18.25537 -17.73928 -17.06259 -16.85636 -16.41947 -16.21181 -15.79259 -15.46862 -15.09163 -15.02692 -14.60596 -14.41773 -14.28059 -14.07330 -14.01071 -13.80022 -13.57246 -13.27370 -12.94654 -12.82771 -12.74988 -12.70994 -12.61652 -12.54571 -12.42633 -12.22021 -12.13418 -12.12566 -11.62335 -11.43589 -10.96308 -10.57479 -10.41855 -10.05271 -9.61957 -9.41053 -8.12514 -6.20613 -0.36185 -0.02915 0.51736 0.65650 1.27645 1.38292 1.40860 1.50543 2.15581 2.38000 2.51163 2.52766 3.21160 3.27525 3.40900 3.59122 3.85628 3.91842 4.02393 4.03352 4.21973 4.34098 4.57880 4.64449 4.72668 4.79893 4.80050 4.92072 4.95133 4.98866 5.05684 5.12041 5.19504 5.25276 5.32762 5.41421 5.52065 5.67322 5.77973 5.93126 6.12201 6.32416 6.54539 6.68152 6.83240 7.04552 7.45215 8.95899 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009165 B = 0.005293 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.306312 B = 5288.919446 C = 7824.921749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C 0.102 3.898 4 N -0.467 5.467 5 C 0.129 3.871 6 Cl -0.022 7.022 7 C 0.116 3.884 8 N -0.642 5.642 9 C 0.488 3.512 10 O -0.461 6.461 11 C 0.509 3.491 12 O -0.545 6.545 13 N -0.559 5.559 14 C 0.246 3.754 15 C -0.510 4.510 16 H 0.045 0.955 17 C 0.024 3.976 18 N -0.921 5.921 19 Si 0.947 3.053 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.279 1.279 23 C 0.132 3.868 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.092 4.092 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.207 0.793 31 H 0.426 0.574 32 H 0.020 0.980 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.573 8.890 -5.730 11.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.056 4.056 4 N -0.177 5.177 5 C -0.037 4.037 6 Cl 0.006 6.994 7 C 0.017 3.983 8 N -0.291 5.291 9 C 0.270 3.730 10 O -0.331 6.331 11 C 0.291 3.709 12 O -0.426 6.426 13 N -0.289 5.289 14 C 0.126 3.874 15 C -0.549 4.549 16 H 0.063 0.937 17 C -0.175 4.175 18 N -0.561 5.561 19 Si 0.773 3.227 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.205 1.205 23 C 0.030 3.970 24 C -0.214 4.214 25 C -0.214 4.214 26 C -0.120 4.120 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.224 0.776 31 H 0.266 0.734 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.827 9.562 -5.437 12.448 hybrid contribution -0.765 -1.156 -0.518 1.480 sum 5.062 8.407 -5.955 11.479 Atomic orbital electron populations 1.20844 0.87373 1.04329 1.04166 1.21278 0.99638 0.92304 0.97433 1.23157 0.87299 0.99193 0.95956 1.67054 1.09667 1.28319 1.12621 1.21411 0.88097 0.88455 1.05784 1.98390 1.05944 1.98417 1.96657 1.18379 0.91794 0.85350 1.02782 1.43060 1.24257 1.08536 1.53288 1.20693 0.87621 0.84908 0.79757 1.90968 1.18770 1.81071 1.42252 1.19614 0.86203 0.84472 0.80602 1.90608 1.19633 1.83437 1.48909 1.48344 1.21647 1.10147 1.48780 1.19498 0.78108 0.97961 0.91866 1.21333 0.91516 1.47822 0.94249 0.93707 1.25475 1.00492 0.95038 0.96498 1.70020 1.19675 1.50646 1.15805 0.85682 0.79700 0.77866 0.79437 1.19787 1.20397 1.20482 1.21377 0.92722 0.84830 0.98098 1.22088 1.01578 1.02731 0.95019 1.22116 0.96215 1.03726 0.99368 1.21883 0.91580 1.00953 0.97616 0.88744 0.92412 0.87880 0.77635 0.73378 0.96236 0.94160 0.92823 0.89057 0.91634 0.89109 0.94136 0.93097 0.89059 0.92056 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 10.04 71.24 0.71 -1.38 16 2 C -0.10 -2.58 5.89 -19.79 -0.12 -2.70 16 3 C 0.10 2.25 10.85 84.68 0.92 3.17 16 4 N -0.47 -12.68 10.33 -186.16 -1.92 -14.60 16 5 C 0.13 3.79 7.30 84.88 0.62 4.41 16 6 Cl -0.02 -0.59 28.09 -2.72 -0.08 -0.67 16 7 C 0.12 3.74 6.36 38.32 0.24 3.98 16 8 N -0.64 -21.59 5.07 -304.43 -1.54 -23.13 16 9 C 0.49 19.66 7.59 87.23 0.66 20.32 16 10 O -0.46 -21.43 9.44 -3.36 -0.03 -21.46 16 11 C 0.51 20.47 7.08 87.23 0.62 21.08 16 12 O -0.54 -20.86 12.76 -3.28 -0.04 -20.91 16 13 N -0.56 -23.05 2.42 -803.83 -1.95 -25.00 16 14 C 0.25 12.10 4.75 85.63 0.41 12.51 16 15 C -0.51 -27.00 7.78 25.60 0.20 -26.80 16 16 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 17 C 0.02 1.31 5.46 84.66 0.46 1.77 16 18 N -0.92 -52.34 13.29 21.45 0.28 -52.05 16 19 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.13 4.46 3.27 44.99 0.15 4.61 16 24 C -0.16 -4.81 8.95 71.98 0.64 -4.17 16 25 C -0.16 -4.49 9.24 71.98 0.66 -3.82 16 26 C -0.09 -3.00 8.51 22.59 0.19 -2.81 16 27 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.37 8.09 -2.39 -0.02 1.35 16 29 H 0.10 1.34 8.09 -2.39 -0.02 1.33 16 30 H 0.21 2.68 8.06 -2.91 -0.02 2.65 16 31 H 0.43 12.87 7.51 -92.71 -0.70 12.17 16 32 H 0.02 1.01 7.83 -2.38 -0.02 0.99 16 33 H 0.04 2.20 5.85 -2.39 -0.01 2.18 16 34 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.09 3.07 7.75 -2.39 -0.02 3.06 16 36 H 0.06 2.13 6.24 -2.39 -0.01 2.12 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 40 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.06 1.93 6.21 -2.39 -0.01 1.92 16 42 H 0.14 5.45 6.13 -2.91 -0.02 5.44 16 Total: -1.00 -63.52 363.90 3.50 -60.02 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.37 Total: 22.85 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 6.38 Total: 30.19 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -5.13 Total: -114.79 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.07 Total: -42.37 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -63.52 3.50 -60.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787897946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.013 kcal (2) G-P(sol) polarization free energy of solvation -63.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds