Wall clock time and date at job start Tue Mar 31 2020 22:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 F 1.39895 * 109.47164 * 300.00125 * 14 12 11 16 16 F 1.39897 * 109.47186 * 60.00432 * 14 12 11 17 17 O 1.42903 * 109.47071 * 179.97438 * 14 12 11 18 18 C 1.35656 * 116.99965 * 179.97438 * 17 14 12 19 19 C 1.39078 * 119.88833 * 359.73076 * 18 17 14 20 20 C 1.37116 * 120.11944 * 179.71915 * 19 18 17 21 21 C 1.40042 * 119.88055 * 0.57166 * 20 19 18 22 22 C 1.46855 * 120.11295 * 179.67543 * 21 20 19 23 23 O 1.21290 * 120.00224 * 0.03079 * 22 21 20 24 24 C 1.40040 * 119.77194 * 359.70661 * 21 20 19 25 25 C 1.37116 * 119.88470 * 359.97438 * 24 21 20 26 26 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 27 27 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 28 28 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 29 29 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 30 30 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 31 31 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 32 32 H 1.08005 * 119.94051 * 359.97438 * 19 18 17 33 33 H 1.08003 * 120.06498 * 180.27119 * 20 19 18 34 34 H 1.08009 * 119.99680 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.05823 * 179.97438 * 24 21 20 36 36 H 1.07998 * 119.94775 * 180.02562 * 25 24 21 37 37 H 1.09003 * 117.49648 * 359.97438 * 26 9 7 38 38 H 1.08991 * 117.50066 * 145.01997 * 26 9 7 39 39 H 1.08996 * 117.49909 * 214.98045 * 27 9 7 40 40 H 1.09006 * 117.50020 * 359.97109 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 9 4.1307 -4.9995 3.5178 16 9 4.1222 -2.8875 4.3889 17 8 3.0646 -4.5958 5.5262 18 6 4.1073 -4.9235 6.3297 19 6 5.4113 -4.7408 5.8819 20 6 6.4688 -5.0650 6.6922 21 6 6.2341 -5.5921 7.9682 22 6 7.3630 -5.9478 8.8376 23 8 8.5010 -5.7847 8.4511 24 6 4.9192 -5.7795 8.4121 25 6 3.8687 -5.4459 7.5964 26 6 1.5730 -3.5796 -0.9302 27 6 0.2452 -2.8210 -1.0000 28 1 -0.4850 0.8369 -0.0732 29 1 0.3751 -2.1632 2.0411 30 1 0.3015 -3.8512 1.4812 31 1 3.0164 -3.0733 1.8316 32 1 5.5913 -4.3390 4.8956 33 1 7.4811 -4.9188 6.3452 34 1 7.1798 -6.3546 9.8212 35 1 4.7328 -6.1860 9.3951 36 1 2.8543 -5.5896 7.9379 37 1 2.3246 -3.3491 -1.6853 38 1 1.5428 -4.6172 -0.5978 39 1 -0.6578 -3.3599 -0.7135 40 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797769223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:22 Heat of formation + Delta-G solvation = -150.910285 kcal Electronic energy + Delta-G solvation = -28903.072015 eV Core-core repulsion = 24320.404907 eV Total energy + Delta-G solvation = -4582.667108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.71568 -47.68698 -40.58762 -39.59877 -39.15451 -37.43995 -36.85074 -33.84430 -32.08464 -31.65281 -31.14020 -28.42327 -26.22973 -25.31691 -24.55873 -23.37556 -21.43590 -21.33740 -20.73350 -19.74420 -19.54331 -18.51114 -18.43529 -17.42585 -16.48945 -16.32987 -16.15138 -15.72630 -15.22827 -14.95358 -14.84717 -14.69810 -14.61876 -14.47778 -14.41595 -14.20649 -13.95467 -13.95246 -13.68655 -13.41427 -13.20930 -12.92509 -12.68817 -12.21287 -12.10622 -11.74634 -11.40190 -11.10987 -11.04186 -10.62450 -10.38746 -10.19907 -10.11419 -9.64462 -9.54980 -9.24589 -8.86178 -8.75950 -8.57083 -8.33386 -6.19142 -4.30279 0.23548 0.93698 1.69485 2.03235 2.21370 2.92757 3.19695 3.26077 3.28496 3.30296 3.36619 3.88522 4.20628 4.27131 4.33571 4.41405 4.44847 4.74490 4.83915 4.97291 5.08104 5.10915 5.19543 5.55263 5.65990 5.79602 5.79793 5.92174 6.07268 6.14272 6.24917 6.30401 6.45095 6.59668 6.60913 6.79423 6.97988 7.06559 7.17176 7.37591 7.59576 7.70706 8.04308 8.19054 8.71880 9.38524 10.87683 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.002627 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.983724 B =10657.988413 C =11265.477297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.019 3.981 10 C 0.160 3.840 11 N -0.668 5.668 12 C 0.503 3.497 13 O -0.491 6.491 14 C 0.429 3.571 15 F -0.176 7.176 16 F -0.173 7.173 17 O -0.283 6.283 18 C 0.146 3.854 19 C -0.209 4.209 20 C -0.017 4.017 21 C -0.228 4.228 22 C 0.387 3.613 23 O -0.465 6.465 24 C -0.031 4.031 25 C -0.148 4.148 26 C -0.210 4.210 27 C -0.137 4.137 28 H 0.263 0.737 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.410 0.590 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.368 -11.196 13.915 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.018 3.982 10 C 0.039 3.961 11 N -0.318 5.318 12 C 0.280 3.720 13 O -0.366 6.366 14 C 0.352 3.648 15 F -0.158 7.158 16 F -0.155 7.155 17 O -0.199 6.199 18 C 0.102 3.898 19 C -0.228 4.228 20 C -0.036 4.036 21 C -0.229 4.229 22 C 0.246 3.754 23 O -0.339 6.339 24 C -0.050 4.050 25 C -0.166 4.166 26 C -0.247 4.247 27 C -0.175 4.175 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.246 0.754 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.831 -11.122 14.135 19.617 hybrid contribution 0.993 1.161 -0.445 1.591 sum 8.824 -9.961 13.690 19.092 Atomic orbital electron populations 1.69975 1.05909 1.27144 1.47840 1.24995 0.94856 0.99105 0.94040 0.86606 0.80015 0.83317 0.78239 1.20575 1.21068 1.19652 1.20355 0.92754 0.88429 1.52783 0.92001 1.19025 1.00123 0.93693 0.85367 1.21352 0.82564 0.98861 0.93357 1.45975 1.13290 1.59681 1.12880 1.19239 0.87373 0.81843 0.83586 1.90807 1.27456 1.51670 1.66617 1.22282 0.86221 0.74810 0.81500 1.93162 1.78417 1.66088 1.78115 1.93186 1.78710 1.48261 1.95294 1.86675 1.32291 1.76526 1.24379 1.19436 0.86162 0.93455 0.90770 1.21545 0.91523 1.06978 1.02743 1.21111 0.99405 0.91299 0.91746 1.20938 0.95706 1.08681 0.97591 1.23918 0.86924 0.73636 0.90941 1.90543 1.25370 1.42095 1.75876 1.21087 0.90571 0.94335 0.98971 1.20337 1.01186 1.03679 0.91447 1.23057 1.00846 0.95500 1.05299 1.22484 0.90804 1.01210 1.02999 0.92688 0.90252 0.92964 0.75382 0.84124 0.84223 0.87809 0.83796 0.83725 0.90104 0.91525 0.91610 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.12 12.65 55.43 0.70 -22.42 16 2 C 0.07 1.90 5.43 -17.82 -0.10 1.80 16 3 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.51 -12.37 8.59 -34.44 -0.30 -12.66 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.02 0.41 1.47 -155.66 -0.23 0.18 16 10 C 0.16 3.32 5.50 -4.04 -0.02 3.29 16 11 N -0.67 -12.14 5.48 -60.29 -0.33 -12.47 16 12 C 0.50 9.01 7.34 -10.98 -0.08 8.93 16 13 O -0.49 -10.09 16.50 -14.36 -0.24 -10.33 16 14 C 0.43 6.60 2.05 36.01 0.07 6.67 16 15 F -0.18 -2.49 15.26 2.25 0.03 -2.46 16 16 F -0.17 -2.61 15.29 2.25 0.03 -2.58 16 17 O -0.28 -4.27 9.59 -38.58 -0.37 -4.64 16 18 C 0.15 1.85 6.50 -38.95 -0.25 1.59 16 19 C -0.21 -2.51 8.20 -39.68 -0.33 -2.83 16 20 C -0.02 -0.18 9.57 -39.31 -0.38 -0.56 16 21 C -0.23 -1.97 5.87 -105.06 -0.62 -2.59 16 22 C 0.39 2.91 11.44 34.22 0.39 3.31 16 23 O -0.47 -5.42 17.16 5.55 0.10 -5.32 16 24 C -0.03 -0.22 9.77 -39.31 -0.38 -0.61 16 25 C -0.15 -1.42 9.95 -39.67 -0.39 -1.82 16 26 C -0.21 -4.08 9.96 -26.69 -0.27 -4.35 16 27 C -0.14 -2.94 9.14 -26.70 -0.24 -3.18 16 28 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 29 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 30 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 31 H 0.41 6.91 8.33 -40.82 -0.34 6.57 16 32 H 0.14 1.72 5.07 -52.48 -0.27 1.45 16 33 H 0.14 1.39 7.64 -52.48 -0.40 0.99 16 34 H 0.11 0.33 8.06 -52.48 -0.42 -0.09 16 35 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -29.40 363.71 -7.09 -36.49 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.35 Total: 6.16 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.12 Total: -2.81 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.37 Total: -34.89 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.51 Total: -20.29 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.07 Total: -5.03 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.40 -7.09 -36.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797769223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.418 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds