Wall clock time and date at job start Tue Mar 31 2020 22:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 F 1.39895 * 109.47164 * 300.00125 * 14 12 11 16 16 F 1.39897 * 109.47186 * 60.00432 * 14 12 11 17 17 O 1.42903 * 109.47071 * 179.97438 * 14 12 11 18 18 C 1.35656 * 116.99965 * 179.97438 * 17 14 12 19 19 C 1.39078 * 119.88833 * 359.73076 * 18 17 14 20 20 C 1.37116 * 120.11944 * 179.71915 * 19 18 17 21 21 C 1.40042 * 119.88055 * 0.57166 * 20 19 18 22 22 C 1.46855 * 120.11295 * 179.67543 * 21 20 19 23 23 O 1.21290 * 120.00224 * 0.03079 * 22 21 20 24 24 C 1.40040 * 119.77194 * 359.70661 * 21 20 19 25 25 C 1.37116 * 119.88470 * 359.97438 * 24 21 20 26 26 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 27 27 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 28 28 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 29 29 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 30 30 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 31 31 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 32 32 H 1.08005 * 119.94051 * 359.97438 * 19 18 17 33 33 H 1.08003 * 120.06498 * 180.27119 * 20 19 18 34 34 H 1.08009 * 119.99680 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.05823 * 179.97438 * 24 21 20 36 36 H 1.07998 * 119.94775 * 180.02562 * 25 24 21 37 37 H 1.09003 * 117.49648 * 359.97438 * 26 9 7 38 38 H 1.08991 * 117.50066 * 145.01997 * 26 9 7 39 39 H 1.08996 * 117.49909 * 214.98045 * 27 9 7 40 40 H 1.09006 * 117.50020 * 359.97109 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 9 4.1307 -4.9995 3.5178 16 9 4.1222 -2.8875 4.3889 17 8 3.0646 -4.5958 5.5262 18 6 4.1073 -4.9235 6.3297 19 6 5.4113 -4.7408 5.8819 20 6 6.4688 -5.0650 6.6922 21 6 6.2341 -5.5921 7.9682 22 6 7.3630 -5.9478 8.8376 23 8 8.5010 -5.7847 8.4511 24 6 4.9192 -5.7795 8.4121 25 6 3.8687 -5.4459 7.5964 26 6 1.5730 -3.5796 -0.9302 27 6 0.2452 -2.8210 -1.0000 28 1 -0.4850 0.8369 -0.0732 29 1 0.3751 -2.1632 2.0411 30 1 0.3015 -3.8512 1.4812 31 1 3.0164 -3.0733 1.8316 32 1 5.5913 -4.3390 4.8956 33 1 7.4811 -4.9188 6.3452 34 1 7.1798 -6.3546 9.8212 35 1 4.7328 -6.1860 9.3951 36 1 2.8543 -5.5896 7.9379 37 1 2.3246 -3.3491 -1.6853 38 1 1.5428 -4.6172 -0.5978 39 1 -0.6578 -3.3599 -0.7135 40 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797769223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:21 Heat of formation + Delta-G solvation = -167.715517 kcal Electronic energy + Delta-G solvation = -28903.800745 eV Core-core repulsion = 24320.404907 eV Total energy + Delta-G solvation = -4583.395837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.91688 -48.88673 -41.47011 -40.99152 -40.03813 -38.65264 -38.17691 -35.41920 -33.99222 -32.38996 -31.97461 -29.77740 -27.85626 -26.92308 -25.41144 -24.26199 -22.98299 -22.14490 -22.11492 -21.41883 -20.57317 -19.82359 -19.71710 -18.33243 -18.03706 -17.39015 -17.24735 -16.81717 -16.75452 -16.42811 -16.24739 -15.95479 -15.54984 -15.50195 -15.42454 -15.28240 -15.22075 -15.09765 -14.90604 -14.56044 -14.37473 -14.23114 -13.83773 -13.67823 -13.53569 -13.03396 -12.98499 -12.84409 -12.40112 -12.16595 -12.03419 -11.67642 -11.35777 -11.02421 -10.81273 -10.50694 -10.32391 -10.27348 -10.04530 -9.68747 -8.12698 -6.27017 -0.49732 0.20475 0.48344 0.74163 1.40082 1.40584 1.45064 1.51707 1.72371 2.00915 2.40314 2.65110 2.87085 3.15371 3.22448 3.34814 3.48552 3.52393 3.63388 4.01887 4.13814 4.16139 4.35257 4.46917 4.48382 4.58154 4.63745 4.79778 4.84157 4.91732 5.01613 5.06823 5.14774 5.19716 5.27259 5.34221 5.48910 5.67418 5.75205 5.78459 6.07955 6.32100 6.50855 6.58990 6.80787 7.43635 8.93721 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.002627 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.983724 B =10657.988413 C =11265.477297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.063 0.937 9 C -0.004 4.004 10 C 0.174 3.826 11 N -0.665 5.665 12 C 0.505 3.495 13 O -0.519 6.519 14 C 0.442 3.558 15 F -0.169 7.169 16 F -0.173 7.173 17 O -0.297 6.297 18 C 0.110 3.890 19 C -0.223 4.223 20 C -0.034 4.034 21 C -0.229 4.229 22 C 0.397 3.603 23 O -0.511 6.511 24 C -0.008 4.008 25 C -0.150 4.150 26 C -0.179 4.179 27 C -0.146 4.146 28 H 0.260 0.740 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.417 0.583 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.166 0.834 35 H 0.198 0.802 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.593 -12.761 16.114 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.547 4.547 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.052 3.948 11 N -0.315 5.315 12 C 0.283 3.717 13 O -0.395 6.395 14 C 0.365 3.635 15 F -0.151 7.151 16 F -0.155 7.155 17 O -0.214 6.214 18 C 0.067 3.933 19 C -0.242 4.242 20 C -0.052 4.052 21 C -0.230 4.230 22 C 0.259 3.741 23 O -0.387 6.387 24 C -0.026 4.026 25 C -0.168 4.168 26 C -0.216 4.216 27 C -0.184 4.184 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.254 0.746 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.182 0.818 35 H 0.215 0.785 36 H 0.178 0.822 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.088 -12.697 16.335 22.597 hybrid contribution 0.655 1.576 -1.046 2.002 sum 9.743 -11.121 15.289 21.268 Atomic orbital electron populations 1.70079 1.07018 1.27433 1.49452 1.25634 0.95476 1.01826 0.94290 0.85768 0.78969 0.80121 0.78116 1.20274 1.21657 1.19114 1.20671 0.93000 0.89576 1.51490 0.91922 1.19055 1.00977 0.94113 0.86285 1.20976 0.83319 0.98033 0.92509 1.45837 1.12841 1.59678 1.13155 1.19530 0.88053 0.80895 0.83254 1.90784 1.28902 1.52629 1.67228 1.21620 0.84824 0.75114 0.81982 1.93175 1.78041 1.65762 1.78080 1.93186 1.78513 1.48394 1.95362 1.86634 1.33546 1.77064 1.24116 1.19855 0.85719 0.95880 0.91872 1.21479 0.91962 1.08008 1.02723 1.21231 0.98850 0.92136 0.92988 1.21355 0.97354 1.07422 0.96879 1.24690 0.85314 0.71857 0.92202 1.90551 1.27100 1.44082 1.76966 1.21609 0.88767 0.91916 1.00286 1.20740 1.02903 1.02851 0.90353 1.23050 0.99132 0.95980 1.03452 1.22409 0.92177 1.01572 1.02260 0.93045 0.93557 0.92110 0.74563 0.85353 0.84611 0.81832 0.78537 0.82187 0.89723 0.89006 0.90617 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.87 12.65 21.45 0.27 -48.60 16 2 C 0.03 1.49 5.43 84.65 0.46 1.95 16 3 Si 0.94 41.24 29.54 68.60 2.03 43.27 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.51 -24.98 8.59 25.60 0.22 -24.76 16 8 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 9 C 0.00 -0.15 1.47 -52.93 -0.08 -0.23 16 10 C 0.17 7.28 5.50 86.38 0.48 7.75 16 11 N -0.66 -24.20 5.48 -463.05 -2.54 -26.74 16 12 C 0.50 18.24 7.34 87.66 0.64 18.88 16 13 O -0.52 -21.64 16.50 15.99 0.26 -21.37 16 14 C 0.44 13.70 2.05 71.24 0.15 13.85 16 15 F -0.17 -4.79 15.26 44.97 0.69 -4.10 16 16 F -0.17 -5.30 15.29 44.97 0.69 -4.61 16 17 O -0.30 -8.98 9.59 -70.68 -0.68 -9.66 16 18 C 0.11 2.72 6.50 22.68 0.15 2.86 16 19 C -0.22 -5.36 8.20 22.21 0.18 -5.18 16 20 C -0.03 -0.69 9.57 22.44 0.21 -0.48 16 21 C -0.23 -3.31 5.87 -20.15 -0.12 -3.42 16 22 C 0.40 4.53 11.44 70.08 0.80 5.33 16 23 O -0.51 -10.98 17.16 -3.06 -0.05 -11.03 16 24 C -0.01 -0.08 9.77 22.44 0.22 0.14 16 25 C -0.15 -2.51 9.95 22.21 0.22 -2.29 16 26 C -0.18 -6.70 9.96 30.62 0.30 -6.39 16 27 C -0.15 -6.25 9.14 30.62 0.28 -5.97 16 28 H 0.26 13.65 8.32 -92.71 -0.77 12.88 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.06 2.42 8.09 -2.38 -0.02 2.40 16 31 H 0.42 13.95 8.33 -92.71 -0.77 13.18 16 32 H 0.13 3.26 5.07 -2.91 -0.01 3.25 16 33 H 0.14 2.77 7.64 -2.91 -0.02 2.75 16 34 H 0.17 0.01 8.06 -2.91 -0.02 -0.01 16 35 H 0.20 -0.10 8.06 -2.91 -0.02 -0.13 16 36 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 Total: -1.00 -66.08 363.71 5.12 -60.96 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.33 Total: 19.85 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 4.12 Total: 2.04 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -2.27 Total: -75.33 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.47 Total: -42.06 kcal Atomic # 9 Polarization: -10.09 SS G_CDS: 1.37 Total: -8.72 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -66.08 5.12 -60.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797769223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.754 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds