Wall clock time and date at job start Tue Mar 31 2020 22:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86801 * 119.99993 * 2 1 4 4 H 1.48495 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46852 * 299.99372 * 3 2 1 6 6 H 1.48498 * 109.47219 * 59.99231 * 3 2 1 7 7 C 1.38800 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99473 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.81003 * 100.00067 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47096 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46929 * 179.97438 * 11 10 9 13 13 O 1.45205 * 109.46807 * 180.02562 * 12 11 10 14 14 C 1.34232 * 116.99609 * 180.02562 * 13 12 11 15 15 O 1.20824 * 120.00455 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99894 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.50772 * 33.51324 * 16 14 13 18 18 C 1.53099 * 109.50829 * 273.43154 * 16 14 13 19 19 O 1.43016 * 109.25879 * 183.21406 * 18 16 14 20 20 C 1.43018 * 113.73651 * 58.67195 * 19 18 16 21 21 C 1.53101 * 109.25488 * 301.32234 * 20 19 18 22 22 N 1.47011 * 109.50883 * 153.64247 * 16 14 13 23 23 C 1.46896 * 111.00202 * 302.32748 * 22 16 14 24 24 C 1.52997 * 109.47149 * 163.36650 * 23 22 16 25 25 F 1.39905 * 109.47076 * 305.66855 * 24 23 22 26 26 F 1.39899 * 109.47580 * 65.66810 * 24 23 22 27 27 H 0.96997 * 120.00073 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46730 * 300.00013 * 10 9 7 29 29 H 1.08997 * 109.46913 * 59.99621 * 10 9 7 30 30 H 1.08993 * 109.47182 * 300.00083 * 11 10 9 31 31 H 1.09005 * 109.46659 * 59.99802 * 11 10 9 32 32 H 1.09000 * 109.47151 * 299.99778 * 12 11 10 33 33 H 1.08994 * 109.47010 * 60.00430 * 12 11 10 34 34 H 1.09004 * 109.50312 * 303.15133 * 18 16 14 35 35 H 1.08995 * 109.50794 * 63.27802 * 18 16 14 36 36 H 1.08995 * 109.51419 * 61.25803 * 20 19 18 37 37 H 1.09000 * 109.50233 * 181.39327 * 20 19 18 38 38 H 1.09006 * 109.50515 * 176.78548 * 21 20 19 39 39 H 1.08994 * 109.50993 * 296.87837 * 21 20 19 40 40 H 1.08997 * 109.47338 * 283.36906 * 23 22 16 41 41 H 1.09001 * 109.47124 * 43.36490 * 23 22 16 42 42 H 1.09002 * 109.47548 * 185.66965 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9793 -5.3243 0.0012 12 6 3.1513 -6.3077 0.0005 13 8 2.6421 -7.6676 0.0005 14 6 3.5485 -8.6576 0.0005 15 8 4.7282 -8.3968 0.0001 16 6 3.0946 -10.0947 0.0011 17 1 2.1679 -10.1839 -0.5658 18 6 2.8587 -10.5557 1.4419 19 8 2.5010 -11.9404 1.4414 20 6 3.4880 -12.7899 0.8501 21 6 3.7301 -12.3514 -0.5967 22 7 4.1306 -10.9369 -0.6142 23 6 4.4280 -10.4909 -1.9818 24 6 5.7592 -11.0927 -2.4363 25 9 6.7551 -10.7785 -1.5053 26 9 5.6337 -12.4827 -2.5336 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7314 -0.8895 29 1 3.1245 -3.7314 0.8905 30 1 1.3710 -5.4841 0.8913 31 1 1.3704 -5.4846 -0.8886 32 1 3.7593 -6.1479 -0.8899 33 1 3.7605 -6.1475 0.8901 34 1 3.7704 -10.4155 2.0227 35 1 2.0516 -9.9714 1.8835 36 1 4.4180 -12.7146 1.4136 37 1 3.1358 -13.8213 0.8637 38 1 4.5224 -12.9594 -1.0335 39 1 2.8141 -12.4781 -1.1736 40 1 3.6334 -10.8189 -2.6519 41 1 4.4950 -9.4032 -2.0028 42 1 6.0296 -10.6834 -3.4097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805544415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:20 Heat of formation + Delta-G solvation = -250.482270 kcal Electronic energy + Delta-G solvation = -27301.016407 eV Core-core repulsion = 22849.475485 eV Total energy + Delta-G solvation = -4451.540922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90650 -47.89381 -42.06394 -40.33688 -38.00862 -36.87465 -34.95850 -34.59145 -32.83098 -31.47889 -28.40002 -27.69019 -27.24211 -25.97089 -23.47850 -23.12407 -22.61852 -21.26911 -19.61965 -19.05878 -18.75186 -18.39054 -18.08172 -17.69492 -17.47138 -17.09376 -16.90624 -16.79599 -16.22874 -16.02931 -15.93614 -15.63892 -15.15640 -15.04009 -14.88025 -14.52566 -14.27297 -14.22447 -13.84722 -13.81251 -13.46502 -13.38757 -13.15566 -12.96925 -12.87204 -12.62840 -12.57548 -12.41095 -12.40375 -12.22497 -11.69450 -11.57283 -11.54391 -11.39822 -11.16664 -10.80312 -10.36354 -9.71029 -8.68620 -8.39031 -6.15279 0.92687 1.17212 1.35244 1.38177 1.50258 1.76349 2.25822 2.29397 2.78789 2.88318 2.95724 3.25974 3.29315 3.43085 3.49744 3.58644 3.79192 3.83363 3.85866 3.95033 3.97502 4.12218 4.15201 4.19692 4.31241 4.35604 4.42886 4.48706 4.57820 4.58752 4.67311 4.78528 4.86450 5.00445 5.07878 5.33470 5.39500 5.39740 5.60433 5.95684 6.17319 6.58028 7.03878 8.70476 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.001954 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.475075 B =14328.933382 C =15174.223176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.074 0.926 9 S -0.185 6.185 10 C -0.092 4.092 11 C -0.086 4.086 12 C 0.081 3.919 13 O -0.354 6.354 14 C 0.466 3.534 15 O -0.507 6.507 16 C 0.065 3.935 17 H 0.104 0.896 18 C 0.079 3.921 19 O -0.383 6.383 20 C 0.056 3.944 21 C 0.008 3.992 22 N -0.532 5.532 23 C -0.007 4.007 24 C 0.269 3.731 25 F -0.213 7.213 26 F -0.209 7.209 27 H 0.272 0.728 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.125 0.875 36 H 0.058 0.942 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.365 -28.293 -3.918 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.241 4.241 11 C -0.124 4.124 12 C 0.006 3.994 13 O -0.270 6.270 14 C 0.308 3.692 15 O -0.394 6.394 16 C -0.045 4.045 17 H 0.121 0.879 18 C 0.001 3.999 19 O -0.301 6.301 20 C -0.021 4.021 21 C -0.119 4.119 22 N -0.260 5.260 23 C -0.135 4.135 24 C 0.215 3.785 25 F -0.194 7.194 26 F -0.190 7.190 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.703 -28.302 -3.535 29.544 hybrid contribution 1.411 1.558 -0.487 2.158 sum 9.114 -26.744 -4.022 28.539 Atomic orbital electron populations 1.70149 1.07620 1.28549 1.47960 1.26057 0.96044 1.03090 0.93770 0.84967 0.78418 0.76712 0.78288 1.18724 1.19668 1.19726 1.23078 0.94812 0.91927 1.58837 0.90810 1.84634 1.13105 1.00849 1.97055 1.23067 1.00767 0.96556 1.03672 1.21107 0.97021 0.89739 1.04579 1.23065 0.96641 0.76517 1.03154 1.86480 1.40387 1.16705 1.83413 1.23553 0.84459 0.88594 0.72600 1.90719 1.19270 1.84900 1.44530 1.21964 0.95567 0.85783 1.01178 0.87876 1.22578 1.02744 0.83379 0.91177 1.88056 1.44841 1.16323 1.80869 1.22946 0.92402 0.95402 0.91309 1.23323 1.02395 0.86946 0.99193 1.61936 1.41512 1.03497 1.19005 1.23444 0.97298 1.02389 0.90383 1.22251 0.86402 0.76322 0.93502 1.92992 1.63889 1.92522 1.70010 1.92868 1.96206 1.33309 1.96656 0.91911 0.91290 0.91393 0.90163 0.90131 0.90563 0.90746 0.92088 0.85753 0.92329 0.85354 0.86739 0.91987 0.88602 0.88809 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.90 13.22 21.65 0.29 -53.62 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.54 9.50 67.95 0.65 -29.89 16 8 H 0.07 4.04 7.80 -2.91 -0.02 4.01 16 9 S -0.19 -9.55 21.44 -56.49 -1.21 -10.76 16 10 C -0.09 -3.49 5.67 71.98 0.41 -3.08 16 11 C -0.09 -2.57 5.60 30.59 0.17 -2.40 16 12 C 0.08 2.08 5.47 71.98 0.39 2.47 16 13 O -0.35 -8.38 10.22 -51.43 -0.53 -8.90 16 14 C 0.47 10.56 5.92 71.24 0.42 10.98 16 15 O -0.51 -14.39 15.23 21.97 0.33 -14.06 16 16 C 0.06 1.12 2.49 44.18 0.11 1.23 16 17 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 18 C 0.08 1.30 6.27 72.02 0.45 1.76 16 19 O -0.38 -6.39 10.83 -148.98 -1.61 -8.00 16 20 C 0.06 0.70 7.01 72.02 0.50 1.21 16 21 C 0.01 0.10 5.33 86.31 0.46 0.56 16 22 N -0.53 -8.93 4.05 -874.39 -3.54 -12.47 16 23 C -0.01 -0.09 5.00 86.30 0.43 0.34 16 24 C 0.27 3.58 5.56 71.98 0.40 3.98 16 25 F -0.21 -4.63 17.16 44.97 0.77 -3.85 16 26 F -0.21 -2.94 14.51 44.97 0.65 -2.29 16 27 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.07 2.54 8.14 -2.40 -0.02 2.52 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 33 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 1.41 5.43 -2.38 -0.01 1.40 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.10 0.85 8.04 -2.39 -0.02 0.83 16 41 H 0.09 1.58 5.91 -2.39 -0.01 1.56 16 42 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.79 368.16 3.08 -68.72 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.03 Total: 11.33 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.86 Total: -11.51 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -3.25 Total: -66.09 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.80 Total: -30.96 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 1.42 Total: -6.14 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -9.55 SS G_CDS: -1.21 Total: -10.76 kcal Total: -71.79 3.08 -68.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805544415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.765 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds