Wall clock time and date at job start Tue Mar 31 2020 22:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 C 1.52998 * 109.47318 * 239.99883 * 2 1 3 5 5 C 1.50703 * 109.47320 * 60.00029 * 4 2 1 6 6 H 1.08007 * 119.99621 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00227 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00044 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00051 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46906 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47135 * 120.00159 * 9 7 5 12 12 H 1.48492 * 109.47535 * 240.00528 * 9 7 5 13 13 C 1.52998 * 109.47378 * 119.99859 * 2 1 3 14 14 N 1.46498 * 109.47036 * 300.00426 * 13 2 1 15 15 C 1.34781 * 119.99999 * 179.97438 * 14 13 2 16 16 O 1.21359 * 119.99940 * 359.97438 * 15 14 13 17 17 C 1.49347 * 119.99852 * 180.02562 * 15 14 13 18 18 O 1.21379 * 120.00240 * 359.97438 * 17 15 14 19 19 N 1.34781 * 119.99852 * 180.02562 * 17 15 14 20 20 C 1.39791 * 119.99836 * 185.57626 * 19 17 15 21 21 C 1.39259 * 120.49657 * 24.62287 * 20 19 17 22 22 C 1.38552 * 118.36862 * 180.28260 * 21 20 19 23 23 C 1.38231 * 119.26516 * 359.43390 * 22 21 20 24 24 N 1.31897 * 120.94993 * 0.28285 * 23 22 21 25 25 C 1.31885 * 121.78246 * 359.97438 * 24 23 22 26 26 Cl 1.73602 * 119.68991 * 180.02562 * 25 24 23 27 27 H 1.08995 * 109.47305 * 299.99912 * 1 2 3 28 28 H 1.08998 * 109.47041 * 60.00313 * 1 2 3 29 29 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47536 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47025 * 300.00199 * 3 2 1 32 32 H 1.09001 * 109.47095 * 59.99413 * 3 2 1 33 33 H 1.09005 * 109.47370 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47215 * 300.00076 * 4 2 1 35 35 H 0.97004 * 119.99834 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47784 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.46866 * 60.00100 * 13 2 1 38 38 H 0.97005 * 120.00106 * 359.97438 * 14 13 2 39 39 H 0.96998 * 120.00089 * 5.58010 * 19 17 15 40 40 H 1.07997 * 120.81628 * 359.97438 * 21 20 19 41 41 H 1.07999 * 120.36394 * 179.71185 * 22 21 20 42 42 H 1.08007 * 119.52650 * 180.25504 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6273 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 0.4225 1.5650 -4.8530 11 1 2.4027 0.8661 -6.0655 12 1 0.4237 -0.5353 -6.0656 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.5738 -1.4786 3.7809 17 6 1.3784 0.2123 4.8889 18 8 0.6809 1.1994 4.7775 19 7 1.7041 -0.2481 6.1130 20 6 1.1446 0.3384 7.2520 21 6 -0.0753 1.0058 7.1764 22 6 -0.5864 1.5759 8.3312 23 6 0.1188 1.4549 9.5139 24 7 1.2693 0.8112 9.5548 25 6 1.7945 0.2582 8.4788 26 17 3.3120 -0.5770 8.5948 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2492 35 1 2.8617 -1.8823 -4.7336 36 1 3.1299 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2492 38 1 0.9941 0.7582 2.3564 39 1 2.3267 -0.9863 6.2038 40 1 -0.6074 1.0816 6.2397 41 1 -1.5276 2.1051 8.3084 42 1 -0.2777 1.8941 10.4174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807515477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:22 Heat of formation + Delta-G solvation = -46.667934 kcal Electronic energy + Delta-G solvation = -26249.278350 eV Core-core repulsion = 22255.220961 eV Total energy + Delta-G solvation = -3994.057389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64073 -40.32491 -38.91138 -37.32011 -37.13492 -35.86124 -33.78317 -32.63144 -32.16810 -30.63397 -27.51528 -26.89843 -26.59295 -25.27013 -24.32722 -23.40039 -22.37461 -20.58391 -19.57574 -18.38435 -17.79140 -17.65334 -17.03162 -16.46968 -16.38712 -16.07610 -15.37250 -15.06978 -15.00151 -14.54950 -14.52994 -14.22834 -13.77431 -13.52962 -13.22112 -12.99527 -12.87247 -12.29514 -12.22363 -12.12553 -11.88883 -11.78796 -11.67868 -11.26642 -11.08148 -10.88478 -10.71580 -10.52461 -10.39786 -10.31089 -10.12013 -9.98306 -9.75857 -9.27235 -9.11044 -8.99520 -8.83160 -8.41475 -6.05373 -4.06777 0.23097 0.60320 1.22956 1.31700 1.90959 2.88800 3.18776 3.27085 3.28011 3.35640 3.37920 3.98402 4.14205 4.21980 4.41149 4.50061 4.52010 4.80739 5.24476 5.30264 5.30945 5.47551 5.52469 5.58520 5.63774 6.01843 6.04301 6.06262 6.09972 6.23449 6.27035 6.45526 6.55671 6.60077 6.95908 6.99198 7.00783 7.08047 7.18366 7.38411 7.56512 7.67416 7.83431 7.92898 8.34120 8.97932 9.56862 11.06024 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.002042 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.569511 B =13709.489311 C =14424.161468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 C -0.130 4.130 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.123 3.877 14 N -0.681 5.681 15 C 0.503 3.497 16 O -0.518 6.518 17 C 0.513 3.487 18 O -0.495 6.495 19 N -0.640 5.640 20 C 0.120 3.880 21 C -0.077 4.077 22 C -0.143 4.143 23 C 0.097 3.903 24 N -0.455 5.455 25 C 0.145 3.855 26 Cl -0.022 7.022 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.260 0.740 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.412 0.588 39 H 0.429 0.571 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 5.034 25.357 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.002 3.998 14 N -0.334 5.334 15 C 0.281 3.719 16 O -0.395 6.395 17 C 0.296 3.704 18 O -0.368 6.368 19 N -0.287 5.287 20 C 0.021 3.979 21 C -0.105 4.105 22 C -0.163 4.163 23 C -0.061 4.061 24 N -0.166 5.166 25 C -0.023 4.023 26 Cl 0.006 6.994 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.250 0.750 39 H 0.269 0.731 40 H 0.184 0.816 41 H 0.168 0.832 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.685 4.737 25.901 26.744 hybrid contribution -0.461 0.373 -1.623 1.728 sum -5.146 5.111 24.278 25.338 Atomic orbital electron populations 1.21794 0.95041 1.01327 1.00584 1.20944 0.95703 0.96001 0.94666 1.21798 1.00650 0.95733 1.00591 1.19105 0.96443 0.95255 0.89335 1.21199 1.31230 1.12115 0.90419 0.92136 1.25014 0.95281 0.95084 0.99144 1.69969 1.36921 1.23020 1.23413 0.86581 0.78622 0.79677 0.83374 1.19776 1.21122 1.21119 1.21919 0.99511 0.96339 0.82073 1.46075 1.50930 1.31526 1.04846 1.19582 0.82594 0.85253 0.84453 1.90805 1.36941 1.25302 1.86407 1.20693 0.80883 0.84188 0.84645 1.90735 1.35632 1.23944 1.86519 1.43205 1.45926 1.36185 1.03360 1.18337 0.93902 0.99560 0.86079 1.21943 0.92186 0.95223 1.01139 1.22237 1.01806 0.99780 0.92487 1.22714 0.89476 0.95437 0.98512 1.67018 1.12511 1.08226 1.28812 1.21396 0.91228 1.00196 0.89456 1.98429 1.27575 1.75183 1.98195 0.95095 0.91138 0.93206 0.93199 0.91135 0.95090 0.96207 0.96207 0.93049 0.90828 0.90825 0.75030 0.73145 0.81554 0.83236 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.05 37.15 0.30 -1.87 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.13 7.65 -34.44 -0.26 -13.40 16 6 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.12 1.98 4.56 -4.04 -0.02 1.96 16 14 N -0.68 -9.29 4.95 -60.77 -0.30 -9.59 16 15 C 0.50 6.81 7.89 -11.63 -0.09 6.72 16 16 O -0.52 -8.12 16.48 5.49 0.09 -8.03 16 17 C 0.51 6.07 7.71 -11.63 -0.09 5.98 16 18 O -0.50 -6.20 13.68 5.47 0.07 -6.12 16 19 N -0.64 -6.65 5.19 -10.17 -0.05 -6.70 16 20 C 0.12 1.21 6.45 -83.54 -0.54 0.67 16 21 C -0.08 -0.68 8.82 -39.09 -0.34 -1.03 16 22 C -0.14 -0.92 10.10 -39.47 -0.40 -1.31 16 23 C 0.10 0.67 11.17 -17.53 -0.20 0.47 16 24 N -0.46 -4.46 10.33 -10.19 -0.11 -4.57 16 25 C 0.14 1.47 7.30 -17.22 -0.13 1.35 16 26 Cl -0.02 -0.21 27.95 -51.86 -1.45 -1.66 16 27 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 32 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.41 5.19 5.63 -40.82 -0.23 4.96 16 39 H 0.43 4.18 7.24 -40.82 -0.30 3.88 16 40 H 0.17 1.52 5.89 -52.49 -0.31 1.21 16 41 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -30.12 365.19 -7.34 -37.46 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.05 Total: 4.56 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.76 Total: -1.58 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.28 Total: -45.89 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.17 Total: -14.15 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.45 Total: -1.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.12 -7.34 -37.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807515477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.208 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds