Wall clock time and date at job start Tue Mar 31 2020 22:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 C 1.52998 * 109.47318 * 239.99883 * 2 1 3 5 5 C 1.50703 * 109.47320 * 60.00029 * 4 2 1 6 6 H 1.08007 * 119.99621 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00227 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00044 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00051 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46906 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47135 * 120.00159 * 9 7 5 12 12 H 1.48492 * 109.47535 * 240.00528 * 9 7 5 13 13 C 1.52998 * 109.47378 * 119.99859 * 2 1 3 14 14 N 1.46498 * 109.47036 * 300.00426 * 13 2 1 15 15 C 1.34781 * 119.99999 * 179.97438 * 14 13 2 16 16 O 1.21359 * 119.99940 * 359.97438 * 15 14 13 17 17 C 1.49347 * 119.99852 * 180.02562 * 15 14 13 18 18 O 1.21379 * 120.00240 * 359.97438 * 17 15 14 19 19 N 1.34781 * 119.99852 * 180.02562 * 17 15 14 20 20 C 1.39791 * 119.99836 * 185.57626 * 19 17 15 21 21 C 1.39259 * 120.49657 * 24.62287 * 20 19 17 22 22 C 1.38552 * 118.36862 * 180.28260 * 21 20 19 23 23 C 1.38231 * 119.26516 * 359.43390 * 22 21 20 24 24 N 1.31897 * 120.94993 * 0.28285 * 23 22 21 25 25 C 1.31885 * 121.78246 * 359.97438 * 24 23 22 26 26 Cl 1.73602 * 119.68991 * 180.02562 * 25 24 23 27 27 H 1.08995 * 109.47305 * 299.99912 * 1 2 3 28 28 H 1.08998 * 109.47041 * 60.00313 * 1 2 3 29 29 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47536 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47025 * 300.00199 * 3 2 1 32 32 H 1.09001 * 109.47095 * 59.99413 * 3 2 1 33 33 H 1.09005 * 109.47370 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47215 * 300.00076 * 4 2 1 35 35 H 0.97004 * 119.99834 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47784 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.46866 * 60.00100 * 13 2 1 38 38 H 0.97005 * 120.00106 * 359.97438 * 14 13 2 39 39 H 0.96998 * 120.00089 * 5.58010 * 19 17 15 40 40 H 1.07997 * 120.81628 * 359.97438 * 21 20 19 41 41 H 1.07999 * 120.36394 * 179.71185 * 22 21 20 42 42 H 1.08007 * 119.52650 * 180.25504 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6273 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 0.4225 1.5650 -4.8530 11 1 2.4027 0.8661 -6.0655 12 1 0.4237 -0.5353 -6.0656 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.5738 -1.4786 3.7809 17 6 1.3784 0.2123 4.8889 18 8 0.6809 1.1994 4.7775 19 7 1.7041 -0.2481 6.1130 20 6 1.1446 0.3384 7.2520 21 6 -0.0753 1.0058 7.1764 22 6 -0.5864 1.5759 8.3312 23 6 0.1188 1.4549 9.5139 24 7 1.2693 0.8112 9.5548 25 6 1.7945 0.2582 8.4788 26 17 3.3120 -0.5770 8.5948 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2492 35 1 2.8617 -1.8823 -4.7336 36 1 3.1299 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2492 38 1 0.9941 0.7582 2.3564 39 1 2.3267 -0.9863 6.2038 40 1 -0.6074 1.0816 6.2397 41 1 -1.5276 2.1051 8.3084 42 1 -0.2777 1.8941 10.4174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807515477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:21 Heat of formation + Delta-G solvation = -66.703937 kcal Electronic energy + Delta-G solvation = -26250.147176 eV Core-core repulsion = 22255.220961 eV Total energy + Delta-G solvation = -3994.926215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.49299 -41.20085 -39.93891 -38.71012 -37.83678 -36.72584 -35.27534 -33.95922 -33.25947 -31.33701 -29.24051 -28.26918 -27.97202 -26.32545 -25.17375 -24.68406 -23.53471 -21.60432 -20.62748 -19.57386 -18.67910 -18.46953 -18.33375 -17.89778 -17.43910 -17.06189 -16.54606 -16.32687 -15.96669 -15.63492 -15.50562 -15.39534 -14.90408 -14.77245 -14.44204 -14.35204 -13.94153 -13.79167 -13.57694 -12.93897 -12.90279 -12.85112 -12.67742 -12.62110 -12.53197 -12.43133 -12.33783 -12.24051 -11.96913 -11.55664 -11.29341 -11.00354 -10.87161 -10.78396 -10.50663 -10.49922 -10.33321 -9.54187 -8.13277 -6.20040 -0.48697 -0.04681 0.33790 0.63265 0.95747 1.42157 1.44206 1.54985 1.89367 2.30275 2.45679 2.55086 3.15205 3.21830 3.38279 3.55056 3.86273 3.89694 3.96650 4.05496 4.20119 4.29560 4.60369 4.65479 4.69223 4.71264 4.89713 4.94961 4.98329 5.02056 5.12787 5.21956 5.41163 5.44214 5.51575 5.53144 5.57020 5.60586 5.79932 5.91258 6.07687 6.32409 6.38973 6.58157 6.74855 6.95127 7.47554 8.99108 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.002042 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.569511 B =13709.489311 C =14424.161468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.126 4.126 4 C 0.040 3.960 5 C -0.511 4.511 6 H 0.071 0.929 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.258 1.258 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.136 3.864 14 N -0.674 5.674 15 C 0.506 3.494 16 O -0.541 6.541 17 C 0.522 3.478 18 O -0.501 6.501 19 N -0.632 5.632 20 C 0.102 3.898 21 C -0.087 4.087 22 C -0.128 4.128 23 C 0.101 3.899 24 N -0.478 5.478 25 C 0.132 3.868 26 Cl -0.029 7.029 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.064 0.936 33 H -0.009 1.009 34 H -0.008 1.008 35 H 0.259 0.741 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.420 0.580 39 H 0.430 0.570 40 H 0.164 0.836 41 H 0.186 0.814 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 7.226 27.098 29.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.065 4.065 3 C -0.183 4.183 4 C 0.002 3.998 5 C -0.549 4.549 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.013 3.987 14 N -0.327 5.327 15 C 0.286 3.714 16 O -0.419 6.419 17 C 0.305 3.695 18 O -0.375 6.375 19 N -0.279 5.279 20 C 0.004 3.996 21 C -0.114 4.114 22 C -0.148 4.148 23 C -0.057 4.057 24 N -0.189 5.189 25 C -0.035 4.035 26 Cl -0.001 7.001 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.009 0.991 34 H 0.010 0.990 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.259 0.741 39 H 0.270 0.730 40 H 0.182 0.818 41 H 0.204 0.796 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.758 6.952 27.675 29.324 hybrid contribution 0.137 -0.294 -2.025 2.051 sum -6.621 6.658 25.650 27.314 Atomic orbital electron populations 1.21731 0.93636 1.01296 1.01605 1.20729 0.96723 0.96242 0.92855 1.21737 1.00224 0.94781 1.01575 1.18977 0.94574 0.94362 0.91871 1.21615 1.30239 1.11990 0.91088 0.91070 1.25901 0.95758 0.95899 1.02592 1.70111 1.38800 1.24904 1.23977 0.85534 0.78015 0.78829 0.79480 1.18200 1.21194 1.21130 1.21540 0.98865 0.95904 0.82399 1.45838 1.51038 1.31601 1.04224 1.19853 0.81881 0.84830 0.84861 1.90799 1.37908 1.26389 1.86799 1.20148 0.80992 0.84012 0.84381 1.90734 1.36095 1.24107 1.86539 1.43096 1.45639 1.36038 1.03163 1.18466 0.94762 1.00731 0.85685 1.22101 0.91843 0.95422 1.02074 1.22634 1.02619 0.98332 0.91184 1.23404 0.88279 0.93923 1.00090 1.67062 1.13920 1.09114 1.28803 1.21434 0.91385 1.00879 0.89759 1.98419 1.28047 1.75395 1.98219 0.91586 0.92504 0.93825 0.93937 0.92476 0.91674 0.99080 0.98991 0.93216 0.91787 0.91642 0.74063 0.73025 0.81823 0.79624 0.77844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 8.05 71.98 0.58 -3.42 16 2 C -0.07 -2.30 0.54 -52.18 -0.03 -2.33 16 3 C -0.13 -4.07 8.05 71.98 0.58 -3.49 16 4 C 0.04 1.92 4.04 29.85 0.12 2.04 16 5 C -0.51 -26.52 7.65 25.60 0.20 -26.32 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -55.58 13.29 21.44 0.28 -55.29 16 9 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.14 4.34 4.56 86.38 0.39 4.74 16 14 N -0.67 -17.45 4.95 -464.52 -2.30 -19.75 16 15 C 0.51 13.27 7.89 87.24 0.69 13.96 16 16 O -0.54 -16.89 16.48 -3.27 -0.05 -16.95 16 17 C 0.52 11.71 7.71 87.24 0.67 12.38 16 18 O -0.50 -11.55 13.68 -3.34 -0.05 -11.59 16 19 N -0.63 -12.68 5.19 -304.43 -1.58 -14.26 16 20 C 0.10 1.93 6.45 38.32 0.25 2.17 16 21 C -0.09 -1.34 8.82 22.59 0.20 -1.14 16 22 C -0.13 -1.19 10.10 22.34 0.23 -0.96 16 23 C 0.10 1.07 11.17 84.68 0.95 2.01 16 24 N -0.48 -8.51 10.33 -186.15 -1.92 -10.44 16 25 C 0.13 2.55 7.30 84.88 0.62 3.17 16 26 Cl -0.03 -0.55 27.95 -2.72 -0.08 -0.63 16 27 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 28 H 0.06 1.97 6.62 -2.39 -0.02 1.96 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 2.00 6.62 -2.38 -0.02 1.98 16 32 H 0.06 1.65 6.86 -2.39 -0.02 1.63 16 33 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.42 9.50 5.63 -92.70 -0.52 8.98 16 39 H 0.43 8.30 7.24 -92.71 -0.67 7.63 16 40 H 0.16 2.63 5.89 -2.91 -0.02 2.62 16 41 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 42 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -66.57 365.19 2.13 -64.44 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.10 Total: 16.56 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.90 Total: 3.02 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -5.52 Total: -99.74 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.10 Total: -28.54 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -66.57 2.13 -64.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807515477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.260 kcal (2) G-P(sol) polarization free energy of solvation -66.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds