Wall clock time and date at job start Tue Mar 31 2020 22:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47521 * 2 1 4 4 C 1.53001 * 109.46751 * 239.99820 * 2 1 3 5 5 C 1.50702 * 109.46906 * 60.00445 * 4 2 1 6 6 H 1.07995 * 120.00144 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99623 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99778 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00296 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46946 * 89.99994 * 9 7 5 11 11 H 1.48493 * 109.47213 * 210.00270 * 9 7 5 12 12 H 1.48499 * 109.46935 * 330.00334 * 9 7 5 13 13 C 1.53000 * 109.47031 * 120.00170 * 2 1 3 14 14 N 1.46496 * 109.47249 * 299.99871 * 13 2 1 15 15 C 1.34778 * 120.00376 * 179.97438 * 14 13 2 16 16 O 1.21361 * 119.99777 * 359.97438 * 15 14 13 17 17 C 1.49346 * 120.00115 * 179.97438 * 15 14 13 18 18 O 1.21375 * 120.00246 * 0.02562 * 17 15 14 19 19 N 1.34779 * 120.00133 * 180.02562 * 17 15 14 20 20 C 1.39789 * 120.00286 * 185.27077 * 19 17 15 21 21 C 1.39364 * 120.47713 * 32.70930 * 20 19 17 22 22 C 1.38448 * 118.36881 * 179.97438 * 21 20 19 23 23 C 1.38434 * 119.23276 * 0.02562 * 22 21 20 24 24 Cl 1.73594 * 119.55297 * 179.97438 * 23 22 21 25 25 N 1.31950 * 120.89603 * 0.27980 * 23 22 21 26 26 C 1.31843 * 121.78266 * 359.42628 * 25 23 22 27 27 H 1.09006 * 109.47082 * 300.00256 * 1 2 3 28 28 H 1.09001 * 109.47294 * 59.99416 * 1 2 3 29 29 H 1.09002 * 109.47616 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47395 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47093 * 300.00091 * 3 2 1 32 32 H 1.09006 * 109.47152 * 59.99787 * 3 2 1 33 33 H 1.09002 * 109.47028 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47502 * 299.99896 * 4 2 1 35 35 H 0.97005 * 119.99856 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.47274 * 179.97438 * 13 2 1 37 37 H 1.09005 * 109.47163 * 59.99775 * 13 2 1 38 38 H 0.97008 * 119.99868 * 359.97438 * 14 13 2 39 39 H 0.97003 * 119.99787 * 5.25828 * 19 17 15 40 40 H 1.08001 * 120.81836 * 359.96292 * 21 20 19 41 41 H 1.08003 * 120.38021 * 180.02562 * 22 21 20 42 42 H 1.08007 * 119.66395 * 180.31237 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7319 8 7 1.4331 0.1387 -4.8058 9 14 2.9460 -1.9997 -3.9034 10 1 2.0883 -3.2111 -3.9489 11 1 3.7380 -1.9066 -5.1561 12 1 3.8664 -2.0883 -2.7414 13 6 2.0399 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8768 -0.4915 3.6695 16 8 2.5737 -1.4788 3.7809 17 6 1.3794 0.2129 4.8889 18 8 0.6820 1.2000 4.7776 19 7 1.7050 -0.2476 6.1131 20 6 1.1513 0.3437 7.2523 21 6 -0.1382 0.8711 7.2192 22 6 -0.6436 1.4462 8.3728 23 6 0.1421 1.4789 9.5121 24 17 -0.4830 2.1985 10.9629 25 7 1.3620 0.9758 9.5085 26 6 1.8785 0.4146 8.4331 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 1.6680 -0.1923 -5.6868 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.9943 0.7582 2.3564 39 1 2.3234 -0.9895 6.2035 40 1 -0.7288 0.8323 6.3158 41 1 -1.6393 1.8644 8.3836 42 1 2.8789 0.0091 8.4700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807515726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:25 Heat of formation + Delta-G solvation = -45.215968 kcal Electronic energy + Delta-G solvation = -25991.803605 eV Core-core repulsion = 21997.809178 eV Total energy + Delta-G solvation = -3993.994427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65348 -40.40133 -38.98456 -37.44174 -37.12050 -35.78222 -33.85014 -32.88579 -32.18393 -30.56520 -28.06863 -27.13487 -26.65262 -25.21268 -24.52564 -23.25379 -22.12489 -20.65099 -19.61044 -18.35975 -17.84831 -17.70650 -17.13856 -16.86249 -16.57977 -16.14450 -15.48785 -15.03385 -14.90238 -14.64869 -14.39562 -14.02521 -13.92242 -13.67856 -13.58944 -13.14565 -12.84710 -12.51068 -12.39803 -12.34731 -12.01737 -11.76927 -11.35261 -11.29257 -11.22333 -11.07093 -10.70305 -10.61884 -10.43196 -10.33480 -10.08231 -9.93506 -9.81196 -9.56762 -9.21763 -9.08015 -8.87304 -8.59316 -6.09568 -4.07574 0.17602 0.59265 1.13645 1.33268 1.90831 2.81477 3.11720 3.24071 3.26562 3.35190 3.37439 3.90850 4.12887 4.18450 4.31358 4.39920 4.45018 4.96466 5.11812 5.16590 5.21407 5.36421 5.37445 5.48216 5.50567 5.90322 5.94534 5.96289 6.00077 6.14198 6.19967 6.40646 6.50241 6.50834 6.77326 6.93411 6.95935 7.02985 7.09650 7.11938 7.26234 7.32415 7.71080 7.74929 8.46494 8.94217 9.52421 11.03000 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.035602 B = 0.001817 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.288029 B =15407.022445 C =15918.972302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.132 4.132 4 C -0.001 4.001 5 C -0.513 4.513 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.121 3.879 14 N -0.681 5.681 15 C 0.504 3.496 16 O -0.521 6.521 17 C 0.511 3.489 18 O -0.495 6.495 19 N -0.643 5.643 20 C 0.102 3.898 21 C -0.066 4.066 22 C -0.129 4.129 23 C 0.156 3.844 24 Cl -0.029 7.029 25 N -0.457 5.457 26 C 0.102 3.898 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.413 0.587 39 H 0.429 0.571 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 0.894 27.623 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.189 4.189 4 C -0.039 4.039 5 C -0.551 4.551 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.001 4.001 14 N -0.334 5.334 15 C 0.283 3.717 16 O -0.398 6.398 17 C 0.294 3.706 18 O -0.367 6.367 19 N -0.291 5.291 20 C 0.004 3.996 21 C -0.094 4.094 22 C -0.150 4.150 23 C -0.009 4.009 24 Cl -0.001 7.001 25 N -0.167 5.167 26 C -0.058 4.058 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.268 0.732 40 H 0.176 0.824 41 H 0.170 0.830 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.007 0.982 28.207 28.296 hybrid contribution 0.119 -0.791 -0.878 1.188 sum -1.888 0.191 27.329 27.395 Atomic orbital electron populations 1.21813 0.94551 1.01416 1.01142 1.20733 0.96065 0.96070 0.93556 1.21809 1.00547 0.95418 1.01145 1.19593 0.96347 0.95498 0.92445 1.21056 1.32022 1.13468 0.88557 0.90333 1.25007 0.95687 0.96762 0.95985 1.69902 1.45765 1.40491 0.97912 0.86853 0.81293 0.83866 0.77699 1.20370 1.21473 1.19016 1.21917 0.99466 0.96328 0.82371 1.46040 1.50967 1.31565 1.04820 1.19621 0.82443 0.85174 0.84501 1.90795 1.37106 1.25406 1.86493 1.20647 0.80990 0.84267 0.84721 1.90799 1.35547 1.23895 1.86508 1.43095 1.46761 1.35964 1.03249 1.18844 0.93425 0.99151 0.88137 1.21680 0.93152 0.95476 0.99121 1.21797 1.01781 1.00557 0.90907 1.21658 0.91716 0.98532 0.88964 1.98415 1.84609 1.80719 1.36320 1.67013 1.11749 1.08929 1.29027 1.22534 0.99544 0.97223 0.86525 0.94859 0.90573 0.93251 0.93240 0.90572 0.94845 0.96251 0.96700 0.92734 0.90854 0.90866 0.74863 0.73221 0.82404 0.83012 0.81132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 2 C -0.06 -1.08 0.54 -154.51 -0.08 -1.17 16 3 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 4 C 0.00 -0.02 3.11 -27.88 -0.09 -0.11 16 5 C -0.51 -13.24 8.20 -34.44 -0.28 -13.52 16 6 H 0.08 2.15 5.92 -52.49 -0.31 1.84 16 7 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 9 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.12 1.78 4.56 -4.04 -0.02 1.77 16 14 N -0.68 -8.59 4.95 -60.76 -0.30 -8.89 16 15 C 0.50 6.13 7.89 -11.63 -0.09 6.04 16 16 O -0.52 -7.31 16.48 5.49 0.09 -7.22 16 17 C 0.51 5.34 7.65 -11.63 -0.09 5.25 16 18 O -0.49 -5.92 14.16 5.47 0.08 -5.84 16 19 N -0.64 -5.13 5.34 -10.19 -0.05 -5.18 16 20 C 0.10 0.83 6.31 -83.58 -0.53 0.30 16 21 C -0.07 -0.55 8.77 -39.09 -0.34 -0.90 16 22 C -0.13 -0.97 9.87 -39.43 -0.39 -1.36 16 23 C 0.16 1.38 7.27 -17.43 -0.13 1.25 16 24 Cl -0.03 -0.23 29.10 -51.86 -1.51 -1.74 16 25 N -0.46 -4.31 10.33 -10.19 -0.11 -4.41 16 26 C 0.10 0.77 11.12 -17.32 -0.19 0.58 16 27 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 28 H 0.08 1.41 6.62 -51.93 -0.34 1.07 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 32 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 33 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 34 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.41 4.91 5.63 -40.82 -0.23 4.68 16 39 H 0.43 2.63 8.30 -40.82 -0.34 2.30 16 40 H 0.16 1.34 6.48 -52.49 -0.34 1.00 16 41 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -30.62 364.45 -7.02 -37.65 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.09 Total: 3.65 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.73 Total: -3.84 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.31 Total: -44.27 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.17 Total: -13.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.51 Total: -1.74 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.62 -7.02 -37.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807515726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.571 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds