Wall clock time and date at job start Tue Mar 31 2020 22:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47521 * 2 1 4 4 C 1.53001 * 109.46751 * 239.99820 * 2 1 3 5 5 C 1.50702 * 109.46906 * 60.00445 * 4 2 1 6 6 H 1.07995 * 120.00144 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99623 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99778 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00296 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46946 * 89.99994 * 9 7 5 11 11 H 1.48493 * 109.47213 * 210.00270 * 9 7 5 12 12 H 1.48499 * 109.46935 * 330.00334 * 9 7 5 13 13 C 1.53000 * 109.47031 * 120.00170 * 2 1 3 14 14 N 1.46496 * 109.47249 * 299.99871 * 13 2 1 15 15 C 1.34778 * 120.00376 * 179.97438 * 14 13 2 16 16 O 1.21361 * 119.99777 * 359.97438 * 15 14 13 17 17 C 1.49346 * 120.00115 * 179.97438 * 15 14 13 18 18 O 1.21375 * 120.00246 * 0.02562 * 17 15 14 19 19 N 1.34779 * 120.00133 * 180.02562 * 17 15 14 20 20 C 1.39789 * 120.00286 * 185.27077 * 19 17 15 21 21 C 1.39364 * 120.47713 * 32.70930 * 20 19 17 22 22 C 1.38448 * 118.36881 * 179.97438 * 21 20 19 23 23 C 1.38434 * 119.23276 * 0.02562 * 22 21 20 24 24 Cl 1.73594 * 119.55297 * 179.97438 * 23 22 21 25 25 N 1.31950 * 120.89603 * 0.27980 * 23 22 21 26 26 C 1.31843 * 121.78266 * 359.42628 * 25 23 22 27 27 H 1.09006 * 109.47082 * 300.00256 * 1 2 3 28 28 H 1.09001 * 109.47294 * 59.99416 * 1 2 3 29 29 H 1.09002 * 109.47616 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47395 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47093 * 300.00091 * 3 2 1 32 32 H 1.09006 * 109.47152 * 59.99787 * 3 2 1 33 33 H 1.09002 * 109.47028 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47502 * 299.99896 * 4 2 1 35 35 H 0.97005 * 119.99856 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.47274 * 179.97438 * 13 2 1 37 37 H 1.09005 * 109.47163 * 59.99775 * 13 2 1 38 38 H 0.97008 * 119.99868 * 359.97438 * 14 13 2 39 39 H 0.97003 * 119.99787 * 5.25828 * 19 17 15 40 40 H 1.08001 * 120.81836 * 359.96292 * 21 20 19 41 41 H 1.08003 * 120.38021 * 180.02562 * 22 21 20 42 42 H 1.08007 * 119.66395 * 180.31237 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7319 8 7 1.4331 0.1387 -4.8058 9 14 2.9460 -1.9997 -3.9034 10 1 2.0883 -3.2111 -3.9489 11 1 3.7380 -1.9066 -5.1561 12 1 3.8664 -2.0883 -2.7414 13 6 2.0399 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8768 -0.4915 3.6695 16 8 2.5737 -1.4788 3.7809 17 6 1.3794 0.2129 4.8889 18 8 0.6820 1.2000 4.7776 19 7 1.7050 -0.2476 6.1131 20 6 1.1513 0.3437 7.2523 21 6 -0.1382 0.8711 7.2192 22 6 -0.6436 1.4462 8.3728 23 6 0.1421 1.4789 9.5121 24 17 -0.4830 2.1985 10.9629 25 7 1.3620 0.9758 9.5085 26 6 1.8785 0.4146 8.4331 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 1.6680 -0.1923 -5.6868 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.9943 0.7582 2.3564 39 1 2.3234 -0.9895 6.2035 40 1 -0.7288 0.8323 6.3158 41 1 -1.6393 1.8644 8.3836 42 1 2.8789 0.0091 8.4700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807515726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:24 Heat of formation + Delta-G solvation = -66.228031 kcal Electronic energy + Delta-G solvation = -25992.714757 eV Core-core repulsion = 21997.809178 eV Total energy + Delta-G solvation = -3994.905578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41126 -41.20285 -39.91944 -38.71874 -37.75049 -36.54690 -35.20965 -33.99668 -33.49357 -31.22589 -29.81874 -28.28274 -28.00286 -26.18479 -25.16949 -24.48338 -23.35193 -21.55018 -20.56213 -19.45912 -18.89259 -18.63763 -18.46316 -17.83999 -17.46434 -17.04486 -16.54466 -16.08030 -15.87587 -15.55157 -15.52010 -15.31306 -15.06442 -14.93344 -14.49026 -14.21621 -14.18831 -13.87249 -13.72241 -13.06583 -12.97074 -12.93148 -12.78539 -12.63608 -12.38464 -12.29385 -12.17264 -11.96230 -11.76562 -11.52772 -11.33296 -11.09010 -10.97610 -10.91532 -10.68793 -10.57112 -10.28601 -9.50916 -8.20376 -6.21068 -0.49328 -0.00268 0.31200 0.70870 1.08681 1.38651 1.41372 1.50866 1.94710 2.40867 2.41094 2.49011 3.15253 3.20669 3.39577 3.60023 3.73395 3.81492 3.85355 4.03571 4.13881 4.44136 4.52695 4.60087 4.68601 4.71908 4.78599 4.86508 4.93136 4.96610 5.09532 5.16312 5.31302 5.33165 5.38905 5.42685 5.55931 5.67903 5.68952 5.78195 6.18373 6.39554 6.47227 6.53875 6.78955 6.86642 7.41661 8.95222 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.035602 B = 0.001817 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.288029 B =15407.022445 C =15918.972302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.503 4.503 6 H 0.049 0.951 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.937 3.063 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.246 1.246 13 C 0.134 3.866 14 N -0.679 5.679 15 C 0.510 3.490 16 O -0.538 6.538 17 C 0.519 3.481 18 O -0.511 6.511 19 N -0.627 5.627 20 C 0.094 3.906 21 C -0.073 4.073 22 C -0.126 4.126 23 C 0.144 3.856 24 Cl -0.028 7.028 25 N -0.479 5.479 26 C 0.108 3.892 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.418 0.582 39 H 0.438 0.562 40 H 0.157 0.843 41 H 0.172 0.828 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 -0.070 30.041 30.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.060 4.060 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.067 0.933 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.762 3.238 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.169 1.169 13 C 0.011 3.989 14 N -0.332 5.332 15 C 0.289 3.711 16 O -0.416 6.416 17 C 0.301 3.699 18 O -0.385 6.385 19 N -0.275 5.275 20 C -0.003 4.003 21 C -0.101 4.101 22 C -0.147 4.147 23 C -0.020 4.020 24 Cl 0.001 6.999 25 N -0.189 5.189 26 C -0.052 4.052 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.257 0.743 39 H 0.279 0.721 40 H 0.174 0.826 41 H 0.190 0.810 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.332 0.011 30.681 30.710 hybrid contribution -0.143 -0.424 -1.546 1.610 sum -1.475 -0.413 29.135 29.175 Atomic orbital electron populations 1.21743 0.94083 1.01543 1.01120 1.20585 0.96416 0.96075 0.92960 1.21739 1.00574 0.95083 1.01095 1.19563 0.96252 0.95609 0.92613 1.21388 1.30237 1.12284 0.90242 0.93272 1.25889 0.97546 1.00079 0.95872 1.70058 1.48190 1.42753 0.98459 0.85855 0.79808 0.80131 0.78013 1.19718 1.21875 1.16934 1.21584 0.99363 0.96047 0.81928 1.45875 1.51166 1.31660 1.04510 1.19799 0.81783 0.84777 0.84709 1.90793 1.37815 1.26181 1.86780 1.20222 0.80930 0.83967 0.84773 1.90806 1.36459 1.24574 1.86662 1.42931 1.46292 1.35813 1.02471 1.18916 0.93599 0.99596 0.88211 1.21779 0.93415 0.95596 0.99304 1.21973 1.02505 1.00034 0.90181 1.21863 0.91935 0.98767 0.89424 1.98413 1.84564 1.80686 1.36286 1.67046 1.12259 1.09762 1.29870 1.22928 1.00387 0.96227 0.85689 0.91783 0.93682 0.93037 0.93122 0.93661 0.91842 0.96154 0.96269 0.92951 0.90814 0.90708 0.74298 0.72066 0.82551 0.81046 0.78476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 8.05 71.98 0.58 -3.43 16 2 C -0.06 -1.95 0.54 -52.18 -0.03 -1.98 16 3 C -0.13 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.00 -0.10 3.11 29.85 0.09 -0.01 16 5 C -0.50 -26.43 8.20 25.60 0.21 -26.22 16 6 H 0.05 2.82 5.92 -2.91 -0.02 2.80 16 7 C 0.00 0.12 5.47 84.65 0.46 0.58 16 8 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 9 Si 0.94 42.78 27.47 68.60 1.88 44.66 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 13 C 0.13 3.60 4.56 86.38 0.39 3.99 16 14 N -0.68 -15.29 4.95 -464.51 -2.30 -17.59 16 15 C 0.51 11.07 7.89 87.24 0.69 11.76 16 16 O -0.54 -13.69 16.48 -3.28 -0.05 -13.74 16 17 C 0.52 9.56 7.65 87.24 0.67 10.23 16 18 O -0.51 -11.04 14.16 -3.33 -0.05 -11.08 16 19 N -0.63 -8.42 5.34 -304.52 -1.63 -10.04 16 20 C 0.09 1.31 6.31 38.29 0.24 1.55 16 21 C -0.07 -1.08 8.77 22.59 0.20 -0.88 16 22 C -0.13 -1.68 9.87 22.37 0.22 -1.46 16 23 C 0.14 2.32 7.27 84.72 0.62 2.94 16 24 Cl -0.03 -0.42 29.10 -2.72 -0.08 -0.50 16 25 N -0.48 -8.19 10.33 -186.15 -1.92 -10.12 16 26 C 0.11 1.39 11.12 84.84 0.94 2.33 16 27 H 0.06 1.60 6.86 -2.38 -0.02 1.58 16 28 H 0.04 1.69 6.62 -2.39 -0.02 1.68 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.71 6.62 -2.38 -0.02 1.69 16 32 H 0.06 1.61 6.86 -2.38 -0.02 1.59 16 33 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 34 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 35 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 36 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.42 8.71 5.63 -92.70 -0.52 8.19 16 39 H 0.44 4.19 8.30 -92.71 -0.77 3.42 16 40 H 0.16 2.37 6.48 -2.91 -0.02 2.35 16 41 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -66.63 364.45 1.76 -64.87 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -0.26 Total: 15.23 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 5.87 Total: -4.07 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -5.55 Total: -95.37 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.10 Total: -24.83 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.66 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -66.63 1.76 -64.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807515726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.358 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds