Wall clock time and date at job start Tue Mar 31 2020 22:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.53008 * 109.47044 * 240.00353 * 2 1 3 5 5 C 1.50698 * 109.47182 * 59.99945 * 4 2 1 6 6 H 1.07995 * 119.99844 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99791 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00188 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00104 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47390 * 90.00342 * 9 7 5 11 11 H 1.48499 * 109.47420 * 210.00461 * 9 7 5 12 12 H 1.48506 * 109.47095 * 330.00433 * 9 7 5 13 13 C 1.53000 * 109.47054 * 120.00273 * 2 1 3 14 14 N 1.46497 * 109.46776 * 299.99747 * 13 2 1 15 15 C 1.34775 * 119.99814 * 180.02562 * 14 13 2 16 16 O 1.21358 * 119.99903 * 359.72347 * 15 14 13 17 17 C 1.49367 * 120.00261 * 180.02562 * 15 14 13 18 18 O 1.21358 * 119.99776 * 359.71898 * 17 15 14 19 19 N 1.34781 * 120.00311 * 179.72511 * 17 15 14 20 20 C 1.39239 * 119.99999 * 174.90451 * 19 17 15 21 21 C 1.39053 * 119.69095 * 185.09381 * 20 19 17 22 22 C 1.38393 * 119.12755 * 179.76902 * 21 20 19 23 23 C 1.38774 * 118.51301 * 0.49886 * 22 21 20 24 24 C 1.38268 * 119.30650 * 359.74454 * 23 22 21 25 25 Cl 1.73599 * 119.59295 * 179.97438 * 24 23 22 26 26 N 1.32009 * 120.81956 * 0.02562 * 24 23 22 27 27 H 1.08992 * 109.47464 * 299.99865 * 1 2 3 28 28 H 1.08998 * 109.47170 * 60.00230 * 1 2 3 29 29 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47237 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46946 * 299.99907 * 3 2 1 32 32 H 1.08992 * 109.46876 * 59.99775 * 3 2 1 33 33 H 1.09002 * 109.46897 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46920 * 299.99677 * 4 2 1 35 35 H 0.96992 * 120.00135 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46920 * 180.02562 * 13 2 1 37 37 H 1.08990 * 109.47161 * 60.00113 * 13 2 1 38 38 H 0.96998 * 120.00628 * 0.02562 * 14 13 2 39 39 H 0.97000 * 119.99764 * 354.89583 * 19 17 15 40 40 H 1.07996 * 120.43260 * 0.02562 * 21 20 19 41 41 H 1.07997 * 120.74430 * 180.22223 * 22 21 20 42 42 H 1.08009 * 120.35299 * 179.77138 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5377 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 1.4324 0.1382 -4.8059 9 14 2.9443 -2.0009 -3.9035 10 1 2.0858 -3.2117 -3.9484 11 1 3.7359 -1.9086 -5.1565 12 1 3.8651 -2.0898 -2.7417 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4453 15 6 1.8777 -0.4909 3.6694 16 8 2.5716 -1.4803 3.7807 17 6 1.3793 0.2129 4.8890 18 8 0.6851 1.2021 4.7777 19 7 1.7008 -0.2505 6.1132 20 6 1.3263 0.4636 7.2483 21 6 1.7517 0.0372 8.5017 22 6 1.3767 0.7584 9.6217 23 6 0.5774 1.8799 9.4504 24 6 0.1865 2.2440 8.1751 25 17 -0.8140 3.6452 7.9524 26 7 0.5638 1.5389 7.1249 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 -0.7216 -1.2491 34 1 1.6767 -1.7489 -1.2493 35 1 1.6661 -0.1936 -5.6868 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 0.9937 0.7578 2.3564 39 1 2.1928 -1.0816 6.2033 40 1 2.3700 -0.8429 8.5994 41 1 1.6952 0.4528 10.6073 42 1 0.2642 2.4624 10.3043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807516303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:20 Heat of formation + Delta-G solvation = -32.643007 kcal Electronic energy + Delta-G solvation = -26183.829854 eV Core-core repulsion = 22190.380631 eV Total energy + Delta-G solvation = -3993.449222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49312 -40.26793 -38.72089 -37.33976 -37.02380 -35.49386 -33.74009 -33.01420 -32.12843 -30.58803 -28.01472 -27.08500 -26.58051 -25.27895 -24.21766 -23.21804 -22.07059 -20.50016 -19.47032 -18.52143 -17.67290 -17.15996 -16.85328 -16.50832 -16.37561 -16.23830 -15.36428 -15.25313 -15.17241 -14.36082 -14.29378 -13.96912 -13.78026 -13.58355 -13.52278 -12.78561 -12.76779 -12.46581 -12.33397 -12.29524 -11.88322 -11.60522 -11.29061 -11.15829 -11.12519 -11.02199 -10.64878 -10.55496 -10.34136 -10.26484 -10.02085 -9.79399 -9.69018 -9.39946 -9.11685 -9.02859 -8.82376 -8.55315 -6.05511 -4.03183 0.32829 0.65042 1.37036 1.38403 1.96988 2.95087 3.25712 3.29738 3.31574 3.38042 3.40792 4.01017 4.25581 4.33547 4.43659 4.49068 4.58340 4.72275 5.21083 5.24411 5.25961 5.43238 5.52313 5.55168 5.58189 5.98241 6.01719 6.04004 6.07913 6.24082 6.28157 6.40571 6.56850 6.57285 6.83886 6.99685 7.01636 7.06355 7.15299 7.31613 7.37616 7.58458 7.75834 7.87369 8.51186 8.98733 9.56564 11.07161 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002107 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.257857 B =13288.886537 C =14258.925881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.132 4.132 4 C -0.001 4.001 5 C -0.512 4.512 6 H 0.079 0.921 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.122 3.878 14 N -0.682 5.682 15 C 0.504 3.496 16 O -0.526 6.526 17 C 0.499 3.501 18 O -0.441 6.441 19 N -0.639 5.639 20 C 0.383 3.617 21 C -0.200 4.200 22 C -0.033 4.033 23 C -0.187 4.187 24 C 0.209 3.791 25 Cl -0.024 7.024 26 N -0.475 5.475 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.414 0.586 39 H 0.432 0.568 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 0.945 31.667 31.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.189 4.189 4 C -0.039 4.039 5 C -0.549 4.549 6 H 0.097 0.903 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.000 4.000 14 N -0.335 5.335 15 C 0.283 3.717 16 O -0.403 6.403 17 C 0.279 3.721 18 O -0.307 6.307 19 N -0.288 5.288 20 C 0.151 3.849 21 C -0.224 4.224 22 C -0.059 4.059 23 C -0.209 4.209 24 C 0.043 3.957 25 Cl 0.005 6.995 26 N -0.192 5.192 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.272 0.728 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.397 1.332 30.437 30.469 hybrid contribution 0.727 -1.023 0.441 1.330 sum 0.330 0.309 30.878 30.882 Atomic orbital electron populations 1.21812 0.94556 1.01399 1.01177 1.20728 0.96062 0.96053 0.93539 1.21807 1.00498 0.95446 1.01173 1.19595 0.96317 0.95494 0.92485 1.21063 1.31906 1.13421 0.88548 0.90318 1.25008 0.95715 0.96771 0.95989 1.69899 1.45871 1.40498 0.97890 0.86852 0.81296 0.83898 0.77660 1.20383 1.21505 1.19011 1.21891 0.99378 0.96297 0.82449 1.46030 1.50932 1.31703 1.04826 1.19759 0.82206 0.85085 0.84612 1.90769 1.37583 1.25357 1.86626 1.20654 0.81569 0.85422 0.84468 1.90908 1.31233 1.22867 1.85740 1.43267 1.55814 1.26367 1.03352 1.18134 0.91594 0.89190 0.85998 1.21601 1.05724 1.04001 0.91040 1.21374 0.93176 0.92233 0.99144 1.21793 1.02406 1.00013 0.96706 1.21444 0.94147 0.90962 0.89105 1.98430 1.66371 1.36893 1.97803 1.66789 1.12934 1.06281 1.33225 0.94786 0.90606 0.93282 0.93279 0.90608 0.94780 0.96275 0.96722 0.92766 0.90954 0.90938 0.74850 0.72811 0.83445 0.83106 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 2 C -0.06 -1.14 0.54 -154.50 -0.08 -1.22 16 3 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 4 C 0.00 -0.02 3.11 -27.88 -0.09 -0.11 16 5 C -0.51 -13.53 8.20 -34.44 -0.28 -13.81 16 6 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 9 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.12 1.93 4.56 -4.04 -0.02 1.91 16 14 N -0.68 -9.66 4.95 -60.76 -0.30 -9.96 16 15 C 0.50 6.97 7.89 -11.62 -0.09 6.88 16 16 O -0.53 -8.01 16.48 5.49 0.09 -7.92 16 17 C 0.50 6.45 7.84 -11.62 -0.09 6.36 16 18 O -0.44 -6.82 14.74 5.49 0.08 -6.74 16 19 N -0.64 -6.36 5.37 -11.86 -0.06 -6.43 16 20 C 0.38 3.83 7.42 -154.82 -1.15 2.68 16 21 C -0.20 -1.23 9.94 -39.22 -0.39 -1.62 16 22 C -0.03 -0.16 10.16 -39.33 -0.40 -0.56 16 23 C -0.19 -1.23 9.87 -39.37 -0.39 -1.62 16 24 C 0.21 2.12 7.27 -17.46 -0.13 1.99 16 25 Cl -0.02 -0.23 29.10 -51.86 -1.51 -1.74 16 26 N -0.48 -5.91 7.86 -9.50 -0.07 -5.99 16 27 H 0.03 0.50 6.86 -51.93 -0.36 0.15 16 28 H 0.08 1.48 6.62 -51.93 -0.34 1.14 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 32 H 0.03 0.51 6.86 -51.93 -0.36 0.15 16 33 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 34 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.41 5.66 5.63 -40.82 -0.23 5.43 16 39 H 0.43 3.15 8.18 -40.82 -0.33 2.82 16 40 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.15 0.21 8.06 -52.49 -0.42 -0.21 16 42 H 0.15 0.60 8.06 -52.48 -0.42 0.17 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -33.00 365.58 -7.94 -40.94 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.17 Total: 3.41 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.61 Total: -1.35 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.33 Total: -48.65 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.17 Total: -14.66 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.51 Total: -1.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.00 -7.94 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807516303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.300 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds