Wall clock time and date at job start Tue Mar 31 2020 22:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.53008 * 109.47044 * 240.00353 * 2 1 3 5 5 C 1.50698 * 109.47182 * 59.99945 * 4 2 1 6 6 H 1.07995 * 119.99844 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99791 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00188 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00104 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47390 * 90.00342 * 9 7 5 11 11 H 1.48499 * 109.47420 * 210.00461 * 9 7 5 12 12 H 1.48506 * 109.47095 * 330.00433 * 9 7 5 13 13 C 1.53000 * 109.47054 * 120.00273 * 2 1 3 14 14 N 1.46497 * 109.46776 * 299.99747 * 13 2 1 15 15 C 1.34775 * 119.99814 * 180.02562 * 14 13 2 16 16 O 1.21358 * 119.99903 * 359.72347 * 15 14 13 17 17 C 1.49367 * 120.00261 * 180.02562 * 15 14 13 18 18 O 1.21358 * 119.99776 * 359.71898 * 17 15 14 19 19 N 1.34781 * 120.00311 * 179.72511 * 17 15 14 20 20 C 1.39239 * 119.99999 * 174.90451 * 19 17 15 21 21 C 1.39053 * 119.69095 * 185.09381 * 20 19 17 22 22 C 1.38393 * 119.12755 * 179.76902 * 21 20 19 23 23 C 1.38774 * 118.51301 * 0.49886 * 22 21 20 24 24 C 1.38268 * 119.30650 * 359.74454 * 23 22 21 25 25 Cl 1.73599 * 119.59295 * 179.97438 * 24 23 22 26 26 N 1.32009 * 120.81956 * 0.02562 * 24 23 22 27 27 H 1.08992 * 109.47464 * 299.99865 * 1 2 3 28 28 H 1.08998 * 109.47170 * 60.00230 * 1 2 3 29 29 H 1.09002 * 109.46999 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47237 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46946 * 299.99907 * 3 2 1 32 32 H 1.08992 * 109.46876 * 59.99775 * 3 2 1 33 33 H 1.09002 * 109.46897 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46920 * 299.99677 * 4 2 1 35 35 H 0.96992 * 120.00135 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46920 * 180.02562 * 13 2 1 37 37 H 1.08990 * 109.47161 * 60.00113 * 13 2 1 38 38 H 0.96998 * 120.00628 * 0.02562 * 14 13 2 39 39 H 0.97000 * 119.99764 * 354.89583 * 19 17 15 40 40 H 1.07996 * 120.43260 * 0.02562 * 21 20 19 41 41 H 1.07997 * 120.74430 * 180.22223 * 22 21 20 42 42 H 1.08009 * 120.35299 * 179.77138 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5377 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 1.4324 0.1382 -4.8059 9 14 2.9443 -2.0009 -3.9035 10 1 2.0858 -3.2117 -3.9484 11 1 3.7359 -1.9086 -5.1565 12 1 3.8651 -2.0898 -2.7417 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4453 15 6 1.8777 -0.4909 3.6694 16 8 2.5716 -1.4803 3.7807 17 6 1.3793 0.2129 4.8890 18 8 0.6851 1.2021 4.7777 19 7 1.7008 -0.2505 6.1132 20 6 1.3263 0.4636 7.2483 21 6 1.7517 0.0372 8.5017 22 6 1.3767 0.7584 9.6217 23 6 0.5774 1.8799 9.4504 24 6 0.1865 2.2440 8.1751 25 17 -0.8140 3.6452 7.9524 26 7 0.5638 1.5389 7.1249 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 -0.7216 -1.2491 34 1 1.6767 -1.7489 -1.2493 35 1 1.6661 -0.1936 -5.6868 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 0.9937 0.7578 2.3564 39 1 2.1928 -1.0816 6.2033 40 1 2.3700 -0.8429 8.5994 41 1 1.6952 0.4528 10.6073 42 1 0.2642 2.4624 10.3043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807516303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:19 Heat of formation + Delta-G solvation = -55.217040 kcal Electronic energy + Delta-G solvation = -26184.808737 eV Core-core repulsion = 22190.380631 eV Total energy + Delta-G solvation = -3994.428106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31645 -41.15226 -39.75860 -38.71075 -37.70322 -36.34672 -35.18784 -34.00071 -33.57918 -31.23241 -29.83395 -28.32809 -28.03341 -26.30607 -24.88685 -24.45498 -23.33997 -21.50946 -20.50534 -19.56155 -18.92421 -18.73539 -17.98896 -17.35387 -17.22924 -16.98797 -16.43470 -16.15965 -16.02223 -15.98350 -15.44596 -15.39448 -15.04800 -14.80254 -14.24195 -14.21954 -14.20303 -13.87490 -13.23905 -13.12338 -12.95021 -12.94439 -12.79057 -12.66121 -12.31465 -12.30930 -12.19072 -11.78112 -11.77055 -11.54846 -11.35887 -11.10084 -10.93543 -10.88378 -10.69456 -10.32240 -10.30147 -9.45821 -8.20896 -6.21800 -0.32824 0.08717 0.49162 0.75483 1.06915 1.38376 1.40588 1.50712 2.00198 2.35719 2.40627 2.65830 3.14420 3.18545 3.54832 3.78470 3.83089 3.98648 4.01181 4.11669 4.14782 4.31501 4.58088 4.66380 4.69127 4.77464 4.90450 4.94434 5.00774 5.06732 5.07898 5.14747 5.28854 5.36323 5.40240 5.48323 5.53493 5.64982 5.65927 5.76018 6.09156 6.38911 6.45714 6.75933 6.85608 6.89547 7.40744 8.94869 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002107 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.257857 B =13288.886537 C =14258.925881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 C -0.127 4.127 4 C -0.002 4.002 5 C -0.503 4.503 6 H 0.048 0.952 7 C 0.001 3.999 8 N -0.953 5.953 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.246 1.246 13 C 0.134 3.866 14 N -0.681 5.681 15 C 0.510 3.490 16 O -0.538 6.538 17 C 0.503 3.497 18 O -0.475 6.475 19 N -0.626 5.626 20 C 0.349 3.651 21 C -0.181 4.181 22 C -0.024 4.024 23 C -0.173 4.173 24 C 0.177 3.823 25 Cl -0.042 7.042 26 N -0.520 5.520 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.416 0.584 39 H 0.444 0.556 40 H 0.184 0.816 41 H 0.198 0.802 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.430 -0.930 35.628 35.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.059 4.059 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.066 0.934 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.763 3.237 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.169 1.169 13 C 0.011 3.989 14 N -0.334 5.334 15 C 0.290 3.710 16 O -0.416 6.416 17 C 0.284 3.716 18 O -0.344 6.344 19 N -0.276 5.276 20 C 0.118 3.882 21 C -0.203 4.203 22 C -0.049 4.049 23 C -0.194 4.194 24 C 0.012 3.988 25 Cl -0.013 7.013 26 N -0.238 5.238 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.255 0.745 39 H 0.286 0.714 40 H 0.201 0.799 41 H 0.215 0.785 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.091 -0.555 34.465 34.486 hybrid contribution 0.241 -0.394 -0.635 0.786 sum 1.332 -0.949 33.830 33.869 Atomic orbital electron populations 1.21738 0.94256 1.01532 1.00960 1.20581 0.96274 0.96037 0.93050 1.21734 1.00611 0.95164 1.00959 1.19558 0.96295 0.95613 0.92485 1.21371 1.30264 1.12266 0.90256 0.93405 1.25905 0.97562 1.00175 0.95812 1.70057 1.48226 1.42759 0.98469 0.85830 0.79771 0.80023 0.78040 1.19654 1.21761 1.16919 1.21598 0.99367 0.96044 0.81864 1.45902 1.51098 1.31755 1.04644 1.19890 0.81640 0.84727 0.84720 1.90759 1.38109 1.25885 1.86844 1.20406 0.81305 0.84929 0.85006 1.90902 1.32999 1.24287 1.86181 1.43119 1.55263 1.26605 1.02624 1.18494 0.93098 0.89598 0.87011 1.22052 1.04299 1.04479 0.89505 1.21962 0.91493 0.90740 1.00720 1.22191 1.01099 1.00286 0.95873 1.21711 0.95654 0.91285 0.90119 1.98413 1.67053 1.37912 1.97936 1.66529 1.14366 1.07729 1.35162 0.92237 0.93575 0.92948 0.92997 0.93566 0.92240 0.96038 0.96183 0.92912 0.90732 0.90625 0.74550 0.71427 0.79885 0.78517 0.80956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 8.05 71.98 0.58 -3.82 16 2 C -0.06 -2.07 0.54 -52.18 -0.03 -2.10 16 3 C -0.13 -4.40 8.05 71.98 0.58 -3.82 16 4 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 5 C -0.50 -27.23 8.20 25.60 0.21 -27.02 16 6 H 0.05 2.83 5.92 -2.91 -0.02 2.81 16 7 C 0.00 0.08 5.47 84.65 0.46 0.54 16 8 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 9 Si 0.94 43.68 27.47 68.60 1.88 45.56 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 12 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 13 C 0.13 3.99 4.56 86.38 0.39 4.39 16 14 N -0.68 -18.26 4.95 -464.52 -2.30 -20.56 16 15 C 0.51 13.36 7.89 87.24 0.69 14.05 16 16 O -0.54 -15.32 16.48 -3.27 -0.05 -15.38 16 17 C 0.50 12.59 7.84 87.24 0.68 13.28 16 18 O -0.47 -14.70 14.74 -3.27 -0.05 -14.75 16 19 N -0.63 -11.46 5.37 -309.80 -1.66 -13.13 16 20 C 0.35 6.34 7.42 132.96 0.99 7.33 16 21 C -0.18 -1.51 9.94 22.50 0.22 -1.28 16 22 C -0.02 -0.12 10.16 22.43 0.23 0.11 16 23 C -0.17 -1.76 9.87 22.41 0.22 -1.54 16 24 C 0.18 3.43 7.27 84.67 0.62 4.04 16 25 Cl -0.04 -0.84 29.10 -2.72 -0.08 -0.92 16 26 N -0.52 -12.67 7.86 -183.98 -1.45 -14.12 16 27 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 28 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 32 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 33 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 34 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.42 10.86 5.63 -92.71 -0.52 10.34 16 39 H 0.44 5.46 8.18 -92.71 -0.76 4.70 16 40 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 41 H 0.20 -0.75 8.06 -2.91 -0.02 -0.78 16 42 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -75.20 365.58 2.28 -72.92 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.25 Total: 14.94 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.94 Total: 4.18 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -5.11 Total: -106.56 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.10 Total: -30.13 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -75.20 2.28 -72.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807516303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.708 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds