Wall clock time and date at job start Tue Mar 31 2020 22:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47129 * 60.00316 * 9 7 5 11 11 H 1.48498 * 109.47276 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47240 * 300.00255 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21493 * 120.00328 * 359.72056 * 15 14 13 17 17 C 1.48344 * 119.99760 * 179.72345 * 15 14 13 18 18 C 1.39291 * 119.55794 * 179.72715 * 17 15 14 19 19 C 1.38450 * 119.22532 * 179.73071 * 18 17 15 20 20 C 1.39851 * 118.37455 * 0.53063 * 19 18 17 21 21 C 1.47930 * 120.47402 * 179.70634 * 20 19 18 22 22 N 1.34781 * 119.99973 * 0.02562 * 21 20 19 23 23 O 1.21532 * 120.00498 * 180.02562 * 21 20 19 24 24 C 1.39911 * 119.05826 * 359.73081 * 20 19 18 25 25 Cl 1.73597 * 119.66320 * 179.97438 * 24 20 19 26 26 N 1.31554 * 120.67606 * 0.02562 * 24 20 19 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 35 35 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 37 37 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 38 38 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 39 39 H 1.07994 * 120.38259 * 359.97257 * 18 17 15 40 40 H 1.07993 * 120.81090 * 180.25939 * 19 18 17 41 41 H 0.97003 * 119.99554 * 359.97438 * 22 21 20 42 42 H 0.96998 * 120.00340 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 1.7444 1.7982 -5.2574 11 1 1.7422 -0.3023 -6.4696 12 1 -0.2367 0.3997 -5.2571 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5803 -1.4755 3.7811 17 6 1.3924 0.2152 4.8807 18 6 1.7345 -0.2685 6.1413 19 6 1.2786 0.3962 7.2670 20 6 0.4774 1.5289 7.0912 21 6 -0.0403 2.2706 8.2616 22 7 0.2597 1.8564 9.5086 23 8 -0.7363 3.2536 8.0990 24 6 0.1721 1.9503 5.7924 25 17 -0.8217 3.3539 5.5560 26 7 0.6295 1.2931 4.7486 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -1.7490 -1.2492 35 1 2.8594 -1.8841 -4.7335 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9942 0.7584 2.3564 39 1 2.3514 -1.1494 6.2394 40 1 1.5318 0.0459 8.2567 41 1 0.8148 1.0716 9.6385 42 1 -0.0795 2.3429 10.2761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807847281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:13 Heat of formation + Delta-G solvation = -49.827464 kcal Electronic energy + Delta-G solvation = -26328.354985 eV Core-core repulsion = 22334.160588 eV Total energy + Delta-G solvation = -3994.194396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34212 -39.87856 -38.89077 -37.18199 -36.85726 -34.66239 -33.82315 -32.89777 -32.09961 -31.69716 -27.38160 -26.81789 -26.48945 -25.34464 -24.17248 -22.98887 -21.76276 -20.77158 -19.17428 -18.60518 -17.95790 -17.49200 -16.69049 -16.31494 -15.88106 -15.59348 -15.53590 -15.22608 -15.17585 -14.50345 -14.45592 -14.31106 -13.73931 -13.53529 -13.25894 -13.08157 -12.75139 -12.23336 -12.04714 -11.94153 -11.71611 -11.16226 -10.98824 -10.88975 -10.83006 -10.64396 -10.61601 -10.43418 -10.36171 -10.27424 -10.26106 -9.87889 -9.87579 -9.55504 -9.19226 -8.93924 -8.85401 -8.35075 -5.99411 -4.00529 -0.34160 0.44016 1.39464 1.98570 2.71092 2.75447 3.01107 3.33369 3.36327 3.38468 3.40326 3.75105 4.02678 4.05405 4.29668 4.46191 4.55147 4.70971 5.10107 5.25414 5.36109 5.46852 5.59616 5.65967 5.76155 6.18323 6.18600 6.19638 6.23943 6.38895 6.45685 6.64936 6.65302 6.71568 6.90282 7.06723 7.08311 7.12074 7.58167 7.63676 7.64009 7.75597 7.99010 8.13768 8.41209 9.03846 9.62553 11.11976 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.002314 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.077735 B =12096.874359 C =13169.558322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.129 4.129 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.124 3.876 14 N -0.693 5.693 15 C 0.559 3.441 16 O -0.529 6.529 17 C 0.134 3.866 18 C -0.121 4.121 19 C -0.035 4.035 20 C -0.167 4.167 21 C 0.564 3.436 22 N -0.848 5.848 23 O -0.509 6.509 24 C 0.224 3.776 25 Cl 0.019 6.981 26 N -0.456 5.456 27 H 0.031 0.969 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.411 0.589 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.400 0.600 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 4.935 28.277 28.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.002 3.998 14 N -0.343 5.343 15 C 0.342 3.658 16 O -0.406 6.406 17 C -0.005 4.005 18 C -0.142 4.142 19 C -0.061 4.061 20 C -0.174 4.174 21 C 0.348 3.652 22 N -0.413 5.413 23 O -0.384 6.384 24 C 0.056 3.944 25 Cl 0.048 6.952 26 N -0.170 5.170 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.249 0.751 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.230 0.770 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.562 5.131 26.990 27.703 hybrid contribution -0.256 0.377 0.190 0.494 sum -3.818 5.508 27.180 27.994 Atomic orbital electron populations 1.21780 0.95125 1.01205 1.00526 1.20921 0.95631 0.95938 0.94782 1.21782 1.00511 0.95825 1.00528 1.19089 0.96357 0.95215 0.89403 1.21143 1.31235 1.12072 0.90482 0.92267 1.25008 0.95318 0.95089 0.99080 1.69949 1.36959 1.22980 1.23549 0.86704 0.79163 0.79775 0.82620 1.20316 1.21430 1.20320 1.21804 0.99220 0.96211 0.82589 1.46153 1.51224 1.31725 1.05209 1.17767 0.81207 0.84048 0.82809 1.90810 1.38033 1.25538 1.86227 1.21594 0.93086 0.90846 0.94960 1.22194 0.99621 1.01361 0.91009 1.21769 0.92428 0.91708 1.00180 1.20692 1.03522 0.99129 0.94008 1.17837 0.80269 0.83973 0.83129 1.43690 1.56114 1.34002 1.07528 1.90942 1.36496 1.25446 1.85483 1.21801 0.93175 0.91385 0.88017 1.98484 1.64937 1.34572 1.97211 1.67113 1.09572 1.06888 1.33389 0.95021 0.91298 0.93341 0.93341 0.91300 0.95016 0.96293 0.96288 0.92995 0.91240 0.91235 0.75106 0.81714 0.82716 0.77040 0.75841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.51 7.65 -34.44 -0.26 -13.78 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.12 2.14 4.56 -4.04 -0.02 2.12 16 14 N -0.69 -10.38 4.95 -61.09 -0.30 -10.68 16 15 C 0.56 8.15 7.82 -12.10 -0.09 8.05 16 16 O -0.53 -8.94 16.31 5.37 0.09 -8.85 16 17 C 0.13 1.58 6.75 -82.94 -0.56 1.02 16 18 C -0.12 -1.01 9.62 -39.11 -0.38 -1.38 16 19 C -0.03 -0.20 9.64 -38.90 -0.37 -0.57 16 20 C -0.17 -1.41 5.90 -104.70 -0.62 -2.03 16 21 C 0.56 4.54 8.05 -12.29 -0.10 4.44 16 22 N -0.85 -2.83 8.83 30.55 0.27 -2.56 16 23 O -0.51 -5.93 14.82 5.34 0.08 -5.85 16 24 C 0.22 2.53 7.31 -17.04 -0.12 2.40 16 25 Cl 0.02 0.23 26.18 -51.86 -1.36 -1.13 16 26 N -0.46 -5.57 9.50 -6.61 -0.06 -5.63 16 27 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 28 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 32 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.41 5.83 5.49 -40.82 -0.22 5.61 16 39 H 0.17 1.17 7.63 -52.49 -0.40 0.77 16 40 H 0.16 0.16 6.51 -52.49 -0.34 -0.18 16 41 H 0.40 0.11 6.93 -40.82 -0.28 -0.17 16 42 H 0.41 0.90 8.93 -40.82 -0.36 0.54 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -33.34 363.43 -7.30 -40.64 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.98 Total: 0.86 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.22 Total: -2.95 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.64 Total: -44.42 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.17 Total: -14.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.36 Total: -1.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.34 -7.30 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807847281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.188 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds