Wall clock time and date at job start Tue Mar 31 2020 22:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47129 * 60.00316 * 9 7 5 11 11 H 1.48498 * 109.47276 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47240 * 300.00255 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21493 * 120.00328 * 359.72056 * 15 14 13 17 17 C 1.48344 * 119.99760 * 179.72345 * 15 14 13 18 18 C 1.39291 * 119.55794 * 179.72715 * 17 15 14 19 19 C 1.38450 * 119.22532 * 179.73071 * 18 17 15 20 20 C 1.39851 * 118.37455 * 0.53063 * 19 18 17 21 21 C 1.47930 * 120.47402 * 179.70634 * 20 19 18 22 22 N 1.34781 * 119.99973 * 0.02562 * 21 20 19 23 23 O 1.21532 * 120.00498 * 180.02562 * 21 20 19 24 24 C 1.39911 * 119.05826 * 359.73081 * 20 19 18 25 25 Cl 1.73597 * 119.66320 * 179.97438 * 24 20 19 26 26 N 1.31554 * 120.67606 * 0.02562 * 24 20 19 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 35 35 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 36 36 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 37 37 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 38 38 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 39 39 H 1.07994 * 120.38259 * 359.97257 * 18 17 15 40 40 H 1.07993 * 120.81090 * 180.25939 * 19 18 17 41 41 H 0.97003 * 119.99554 * 359.97438 * 22 21 20 42 42 H 0.96998 * 120.00340 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 1.7444 1.7982 -5.2574 11 1 1.7422 -0.3023 -6.4696 12 1 -0.2367 0.3997 -5.2571 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5803 -1.4755 3.7811 17 6 1.3924 0.2152 4.8807 18 6 1.7345 -0.2685 6.1413 19 6 1.2786 0.3962 7.2670 20 6 0.4774 1.5289 7.0912 21 6 -0.0403 2.2706 8.2616 22 7 0.2597 1.8564 9.5086 23 8 -0.7363 3.2536 8.0990 24 6 0.1721 1.9503 5.7924 25 17 -0.8217 3.3539 5.5560 26 7 0.6295 1.2931 4.7486 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -1.7490 -1.2492 35 1 2.8594 -1.8841 -4.7335 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9942 0.7584 2.3564 39 1 2.3514 -1.1494 6.2394 40 1 1.5318 0.0459 8.2567 41 1 0.8148 1.0716 9.6385 42 1 -0.0795 2.3429 10.2761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807847281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:12 Heat of formation + Delta-G solvation = -75.151900 kcal Electronic energy + Delta-G solvation = -26329.453135 eV Core-core repulsion = 22334.160588 eV Total energy + Delta-G solvation = -3995.292546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.12592 -40.83440 -39.76754 -38.64495 -37.68906 -35.46137 -35.11334 -34.07753 -33.41154 -32.51753 -29.17427 -28.16049 -27.98849 -26.45569 -24.89258 -24.74845 -22.55255 -21.77217 -20.31175 -19.41171 -18.87867 -18.50541 -18.31451 -17.36878 -16.82148 -16.74209 -16.42022 -16.35583 -16.16737 -15.88754 -15.40318 -15.36497 -14.80582 -14.76383 -14.58110 -14.28320 -13.96786 -13.92843 -13.79388 -12.87601 -12.78241 -12.76006 -12.60492 -12.49169 -12.33495 -12.23257 -12.01865 -11.78006 -11.55200 -11.34017 -11.31598 -10.99630 -10.88176 -10.72282 -10.63785 -10.49353 -10.35834 -10.10776 -8.13002 -6.20126 -1.08053 -0.21469 0.61641 1.16460 1.43060 1.44695 1.51860 1.90314 1.92189 2.26408 2.45209 2.53424 2.94630 3.21325 3.35734 3.49818 3.63212 3.90420 3.95663 4.02289 4.06300 4.20895 4.53604 4.61762 4.67774 4.70324 4.75928 4.94082 5.03832 5.05964 5.10866 5.30530 5.43179 5.49071 5.51297 5.56643 5.79272 5.84706 5.90478 6.04471 6.31481 6.34199 6.45529 6.94055 6.97939 7.22814 7.47081 8.99049 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.002314 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.077735 B =12096.874359 C =13169.558322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.069 0.931 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.138 3.862 14 N -0.691 5.691 15 C 0.561 3.439 16 O -0.557 6.557 17 C 0.109 3.891 18 C -0.109 4.109 19 C -0.006 4.006 20 C -0.161 4.161 21 C 0.562 3.438 22 N -0.820 5.820 23 O -0.551 6.551 24 C 0.203 3.797 25 Cl 0.001 6.999 26 N -0.475 5.475 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.061 0.939 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.416 0.584 39 H 0.181 0.819 40 H 0.213 0.787 41 H 0.419 0.581 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 5.629 31.218 31.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.087 0.913 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.216 1.216 12 H -0.193 1.193 13 C 0.014 3.986 14 N -0.342 5.342 15 C 0.346 3.654 16 O -0.435 6.435 17 C -0.029 4.029 18 C -0.130 4.130 19 C -0.032 4.032 20 C -0.167 4.167 21 C 0.345 3.655 22 N -0.387 5.387 23 O -0.429 6.429 24 C 0.035 3.965 25 Cl 0.030 6.970 26 N -0.189 5.189 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.255 0.745 39 H 0.199 0.801 40 H 0.230 0.770 41 H 0.251 0.749 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.035 5.817 29.983 30.807 hybrid contribution -0.071 0.111 -0.569 0.584 sum -4.106 5.928 29.414 30.285 Atomic orbital electron populations 1.21700 0.93914 1.01076 1.01322 1.20714 0.96485 0.96192 0.93113 1.21702 1.00109 0.94883 1.01324 1.18951 0.94500 0.94268 0.91844 1.21547 1.30487 1.12052 0.91180 0.91269 1.25901 0.95703 0.95886 1.02546 1.70097 1.38689 1.24785 1.24130 0.85633 0.78904 0.78757 0.78539 1.19326 1.21578 1.19334 1.21404 0.98450 0.95655 0.83080 1.45984 1.51570 1.31816 1.04850 1.18159 0.80312 0.83623 0.83301 1.90788 1.39221 1.26787 1.86747 1.21219 0.95151 0.91724 0.94777 1.22447 0.98804 1.01500 0.90234 1.22315 0.89618 0.89404 1.01833 1.20907 1.03093 0.99579 0.93166 1.17839 0.80017 0.83505 0.84108 1.43483 1.54939 1.34092 1.06152 1.90937 1.38557 1.27312 1.86125 1.21934 0.94081 0.91476 0.89049 1.98472 1.65600 1.35624 1.97348 1.66879 1.10197 1.07357 1.34471 0.92061 0.92543 0.93972 0.93975 0.92545 0.92057 0.99109 0.99105 0.93152 0.92330 0.92322 0.74524 0.80147 0.77045 0.74853 0.74745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 8.05 71.98 0.58 -3.77 16 2 C -0.06 -2.49 0.54 -52.18 -0.03 -2.51 16 3 C -0.12 -4.35 8.05 71.98 0.58 -3.77 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.51 -27.72 7.65 25.60 0.20 -27.52 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 8 N -0.94 -56.65 13.29 21.45 0.28 -56.37 16 9 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 C 0.14 4.86 4.56 86.38 0.39 5.25 16 14 N -0.69 -20.49 4.95 -465.48 -2.30 -22.79 16 15 C 0.56 16.04 7.82 86.93 0.68 16.72 16 16 O -0.56 -18.62 16.31 -3.69 -0.06 -18.69 16 17 C 0.11 2.41 6.75 41.96 0.28 2.69 16 18 C -0.11 -1.46 9.62 22.57 0.22 -1.24 16 19 C -0.01 -0.04 9.64 22.71 0.22 0.18 16 20 C -0.16 -2.25 5.90 -19.91 -0.12 -2.37 16 21 C 0.56 7.47 8.05 86.81 0.70 8.16 16 22 N -0.82 -2.07 8.83 -175.55 -1.55 -3.62 16 23 O -0.55 -12.13 14.82 -3.81 -0.06 -12.19 16 24 C 0.20 4.31 7.31 85.14 0.62 4.93 16 25 Cl 0.00 0.01 26.18 -2.72 -0.07 -0.06 16 26 N -0.48 -11.08 9.50 -174.84 -1.66 -12.74 16 27 H 0.06 1.79 6.86 -2.39 -0.02 1.78 16 28 H 0.06 2.13 6.62 -2.38 -0.02 2.12 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 2.13 6.62 -2.38 -0.02 2.12 16 32 H 0.06 1.80 6.86 -2.39 -0.02 1.78 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 35 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.42 11.43 5.49 -92.71 -0.51 10.92 16 39 H 0.18 1.90 7.63 -2.91 -0.02 1.87 16 40 H 0.21 -1.06 6.51 -2.91 -0.02 -1.08 16 41 H 0.42 -2.10 6.93 -92.71 -0.64 -2.75 16 42 H 0.42 0.27 8.93 -92.71 -0.83 -0.55 16 Total: -1.00 -76.57 363.43 0.65 -75.93 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -0.87 Total: 5.28 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 4.91 Total: -0.74 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -5.23 Total: -95.52 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.12 Total: -30.87 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.07 Total: -0.06 kcal Total: -76.57 0.65 -75.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807847281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.773 kcal (2) G-P(sol) polarization free energy of solvation -76.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds