Wall clock time and date at job start Tue Mar 31 2020 22:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31862 * 118.93395 * 2 1 4 4 C 1.32358 * 121.13855 * 180.02562 * 3 2 1 5 5 C 1.39322 * 119.04492 * 359.97438 * 4 3 2 6 6 C 1.48286 * 120.95609 * 179.97438 * 5 4 3 7 7 N 1.30925 * 126.31651 * 179.68866 * 6 5 4 8 8 O 1.21275 * 110.34131 * 179.84445 * 7 6 5 9 9 C 1.34253 * 109.92278 * 0.42387 * 8 7 6 10 10 C 1.47603 * 126.56721 * 179.71541 * 9 8 7 11 11 C 1.39601 * 120.18892 * 180.02562 * 10 9 8 12 12 C 1.37879 * 119.91575 * 179.97438 * 11 10 9 13 13 C 1.38537 * 120.31542 * 359.97438 * 12 11 10 14 14 C 1.38063 * 120.38950 * 0.02562 * 13 12 11 15 15 C 1.38790 * 120.07214 * 359.73122 * 14 13 12 16 16 O 1.35570 * 120.16057 * 180.27921 * 15 14 13 17 17 C 1.34808 * 116.99860 * 354.40301 * 16 15 14 18 18 H 1.08004 * 119.99968 * 5.04274 * 17 16 15 19 19 C 1.38675 * 119.99972 * 185.04599 * 17 16 15 20 20 N 1.31537 * 119.99979 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00104 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47366 * 89.99968 * 21 19 17 23 23 H 1.48507 * 109.47256 * 209.99969 * 21 19 17 24 24 H 1.48503 * 109.47172 * 330.00068 * 21 19 17 25 25 N 1.32070 * 106.86248 * 359.74192 * 9 8 7 26 26 C 1.40702 * 118.09079 * 0.02562 * 5 4 3 27 27 N 1.38245 * 120.60869 * 180.02562 * 26 5 4 28 28 N 1.31736 * 118.93525 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46622 * 90.00462 * 1 2 3 30 30 H 1.08998 * 109.46880 * 210.00138 * 1 2 3 31 31 H 1.09003 * 109.47102 * 330.00594 * 1 2 3 32 32 H 1.07995 * 120.47215 * 179.72146 * 4 3 2 33 33 H 1.07997 * 120.04098 * 359.95492 * 11 10 9 34 34 H 1.08005 * 119.84250 * 179.97438 * 12 11 10 35 35 H 1.08001 * 119.80512 * 179.97438 * 13 12 11 36 36 H 1.08004 * 119.96619 * 179.97438 * 14 13 12 37 37 H 0.96995 * 120.00407 * 180.02562 * 20 19 17 38 38 H 0.96994 * 119.99974 * 179.97438 * 27 26 5 39 39 H 0.96999 * 120.00250 * 359.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1450 1.1540 0.0000 4 6 3.4676 1.2049 -0.0005 5 6 4.1904 0.0139 -0.0005 6 6 5.6732 0.0214 -0.0016 7 7 6.4540 -1.0295 0.0040 8 8 7.6182 -0.6898 -0.0019 9 6 7.7038 0.6500 -0.0029 10 6 8.9429 1.4520 -0.0035 11 6 8.8766 2.8465 -0.0040 12 6 10.0376 3.5901 -0.0040 13 6 11.2715 2.9602 -0.0031 14 6 11.3520 1.5819 -0.0026 15 6 10.1936 0.8176 0.0025 16 8 10.2706 -0.5359 0.0087 17 6 11.4987 -1.0796 -0.1076 18 1 12.3718 -0.4440 -0.1181 19 6 11.6409 -2.4549 -0.2138 20 7 12.8392 -2.9854 -0.3268 21 14 10.1308 -3.5543 -0.1950 22 1 9.6416 -3.7472 -1.5837 23 1 10.4847 -4.8714 0.3926 24 1 9.0656 -2.9182 0.6212 25 7 6.4669 1.1129 -0.0026 26 6 3.4729 -1.1965 -0.0005 27 7 4.1374 -2.4087 0.0000 28 7 2.1444 -1.1529 -0.0005 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 3.9791 2.1561 -0.0050 33 1 7.9171 3.3421 -0.0047 34 1 9.9850 4.6689 -0.0048 35 1 12.1757 3.5507 -0.0035 36 1 12.3176 1.0979 -0.0023 37 1 12.9387 -3.9474 -0.4014 38 1 3.6340 -3.2378 0.0004 39 1 5.1072 -2.4302 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809469470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:06 Heat of formation + Delta-G solvation = 123.659001 kcal Electronic energy + Delta-G solvation = -28115.565566 eV Core-core repulsion = 24027.786613 eV Total energy + Delta-G solvation = -4087.778953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.02571 -41.09012 -39.53861 -36.96479 -36.27281 -35.47148 -33.70239 -32.79000 -32.43072 -31.25897 -30.04757 -29.44464 -28.63378 -25.63473 -24.71357 -23.82214 -23.59733 -22.33176 -21.62826 -20.86762 -18.39319 -18.26515 -18.12528 -17.65937 -17.47932 -16.86552 -15.93559 -15.59915 -15.44590 -15.23339 -15.01112 -14.44790 -14.28909 -14.15083 -13.95795 -13.43711 -13.37454 -13.24187 -12.72251 -12.60069 -12.42122 -12.18637 -11.99379 -11.85828 -11.66734 -11.38519 -11.21482 -11.04606 -10.98757 -10.73624 -10.57187 -10.34372 -9.76565 -9.73390 -9.38671 -9.12292 -8.52228 -8.26949 -7.68350 -6.70231 -4.35817 0.46911 0.93862 1.22663 1.98079 2.13225 2.75773 2.95125 3.10612 3.15859 3.29568 3.34066 3.61901 3.73121 3.88647 4.06211 4.12626 4.19901 4.20038 4.39939 4.67099 4.84152 5.07850 5.23560 5.32605 5.36325 5.37159 5.49530 5.51036 5.66448 5.73458 5.88630 5.94167 6.13393 6.18229 6.27110 6.37766 6.63231 6.72173 6.81926 6.95665 7.01650 7.25599 7.45806 7.49774 7.70463 8.09361 8.47113 8.62199 9.17069 10.34627 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.003604 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.656508 B = 7767.642642 C = 9909.115995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.368 3.632 3 N -0.562 5.562 4 C 0.229 3.771 5 C -0.197 4.197 6 C 0.234 3.766 7 N -0.419 5.419 8 O 0.096 5.904 9 C 0.279 3.721 10 C -0.135 4.135 11 C -0.011 4.011 12 C -0.213 4.213 13 C -0.043 4.043 14 C -0.220 4.220 15 C 0.188 3.812 16 O -0.186 6.186 17 C -0.392 4.392 18 H 0.114 0.886 19 C 0.073 3.927 20 N -0.859 5.859 21 Si 0.895 3.105 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.245 1.245 25 N -0.500 5.500 26 C 0.472 3.528 27 N -0.820 5.820 28 N -0.581 5.581 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.179 0.821 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.285 0.715 38 H 0.406 0.594 39 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 6.830 0.583 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.099 3.901 3 N -0.281 5.281 4 C 0.064 3.936 5 C -0.210 4.210 6 C -0.037 4.037 7 N -0.133 5.133 8 O 0.041 5.959 9 C 0.066 3.934 10 C -0.140 4.140 11 C -0.031 4.031 12 C -0.232 4.232 13 C -0.062 4.062 14 C -0.239 4.239 15 C 0.130 3.870 16 O -0.086 6.086 17 C -0.466 4.466 18 H 0.131 0.869 19 C -0.134 4.134 20 N -0.494 5.494 21 Si 0.719 3.281 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.168 1.168 25 N -0.235 5.235 26 C 0.223 3.777 27 N -0.367 5.367 28 N -0.307 5.307 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.196 0.804 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.095 0.905 38 H 0.236 0.764 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -16.375 5.845 0.594 17.397 hybrid contribution 1.161 -1.036 -0.053 1.557 sum -15.214 4.809 0.541 15.965 Atomic orbital electron populations 1.20592 0.85541 1.04211 1.03972 1.23111 0.97906 0.82697 0.86338 1.68390 1.09117 1.29220 1.21371 1.23124 0.88672 0.97326 0.84452 1.18350 0.87728 0.95106 1.19853 1.23118 0.94996 0.84910 1.00711 1.74117 0.90180 1.23793 1.25202 1.85515 1.20305 1.24003 1.66030 1.26064 0.93884 0.81036 0.92394 1.16310 0.83931 0.91288 1.22468 1.20737 0.99021 0.90088 0.93249 1.20637 0.91926 0.99276 1.11402 1.21086 0.97468 0.93953 0.93685 1.21230 0.98775 0.93863 1.10046 1.19026 0.92129 0.83821 0.92015 1.83569 1.33590 1.15242 1.76240 1.20882 0.81487 0.92476 1.51797 0.86852 1.24501 0.97993 0.96247 0.94632 1.69615 1.21813 1.13631 1.44365 0.86300 0.82560 0.79206 0.80012 1.19527 1.20538 1.16824 1.72156 0.98848 1.27480 1.25064 1.18411 0.88121 0.86193 0.85006 1.42855 1.11478 1.04501 1.77877 1.67890 1.06437 1.31176 1.25163 0.89408 0.89659 0.89312 0.80431 0.85111 0.86176 0.86270 0.83920 0.90458 0.76372 0.73559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.31 36.01 0.37 -0.31 16 2 C 0.37 4.63 7.64 -157.18 -1.20 3.43 16 3 N -0.56 -7.53 10.31 -10.54 -0.11 -7.64 16 4 C 0.23 3.20 10.98 -16.92 -0.19 3.01 16 5 C -0.20 -3.10 5.93 -104.43 -0.62 -3.72 16 6 C 0.23 4.19 7.79 -156.28 -1.22 2.97 16 7 N -0.42 -8.10 9.25 31.23 0.29 -7.81 16 8 O 0.10 2.04 9.98 -2.03 -0.02 2.01 16 9 C 0.28 5.47 7.95 -13.85 -0.11 5.36 16 10 C -0.14 -2.56 5.89 -104.82 -0.62 -3.17 16 11 C -0.01 -0.18 9.70 -39.20 -0.38 -0.56 16 12 C -0.21 -3.01 10.03 -39.60 -0.40 -3.40 16 13 C -0.04 -0.64 10.03 -39.54 -0.40 -1.04 16 14 C -0.22 -4.08 9.16 -39.44 -0.36 -4.44 16 15 C 0.19 3.91 6.66 -38.63 -0.26 3.66 16 16 O -0.19 -4.45 7.03 -17.88 -0.13 -4.58 16 17 C -0.39 -10.02 9.95 30.89 0.31 -9.71 16 18 H 0.11 2.89 5.44 -52.48 -0.29 2.61 16 19 C 0.07 1.91 5.49 -17.52 -0.10 1.81 16 20 N -0.86 -23.06 13.96 55.48 0.77 -22.29 16 21 Si 0.89 20.61 28.62 -169.99 -4.86 15.74 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.24 -5.71 7.11 56.52 0.40 -5.31 16 25 N -0.50 -9.05 11.04 -10.23 -0.11 -9.16 16 26 C 0.47 7.04 7.83 -154.71 -1.21 5.83 16 27 N -0.82 -11.08 8.99 31.38 0.28 -10.80 16 28 N -0.58 -8.02 10.35 -9.77 -0.10 -8.12 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.18 2.18 7.96 -52.49 -0.42 1.77 16 33 H 0.13 1.81 7.87 -52.49 -0.41 1.39 16 34 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.14 2.73 5.64 -52.48 -0.30 2.43 16 37 H 0.29 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.41 4.38 8.95 -40.82 -0.37 4.01 16 39 H 0.43 6.40 5.60 -40.82 -0.23 6.17 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -28.66 346.51 -8.39 -37.05 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.25 Total: 10.64 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -6.37 Total: -0.28 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: 1.02 Total: -65.81 kcal Atomic # 8 Polarization: -2.42 SS G_CDS: -0.15 Total: -2.56 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.86 Total: 15.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.66 -8.39 -37.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809469470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.712 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds