Wall clock time and date at job start Tue Mar 31 2020 22:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31862 * 118.93395 * 2 1 4 4 C 1.32358 * 121.13855 * 180.02562 * 3 2 1 5 5 C 1.39322 * 119.04492 * 359.97438 * 4 3 2 6 6 C 1.48286 * 120.95609 * 179.97438 * 5 4 3 7 7 N 1.30925 * 126.31651 * 179.68866 * 6 5 4 8 8 O 1.21275 * 110.34131 * 179.84445 * 7 6 5 9 9 C 1.34253 * 109.92278 * 0.42387 * 8 7 6 10 10 C 1.47603 * 126.56721 * 179.71541 * 9 8 7 11 11 C 1.39601 * 120.18892 * 180.02562 * 10 9 8 12 12 C 1.37879 * 119.91575 * 179.97438 * 11 10 9 13 13 C 1.38537 * 120.31542 * 359.97438 * 12 11 10 14 14 C 1.38063 * 120.38950 * 0.02562 * 13 12 11 15 15 C 1.38790 * 120.07214 * 359.73122 * 14 13 12 16 16 O 1.35570 * 120.16057 * 180.27921 * 15 14 13 17 17 C 1.34808 * 116.99860 * 354.40301 * 16 15 14 18 18 H 1.08004 * 119.99968 * 5.04274 * 17 16 15 19 19 C 1.38675 * 119.99972 * 185.04599 * 17 16 15 20 20 N 1.31537 * 119.99979 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00104 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47366 * 89.99968 * 21 19 17 23 23 H 1.48507 * 109.47256 * 209.99969 * 21 19 17 24 24 H 1.48503 * 109.47172 * 330.00068 * 21 19 17 25 25 N 1.32070 * 106.86248 * 359.74192 * 9 8 7 26 26 C 1.40702 * 118.09079 * 0.02562 * 5 4 3 27 27 N 1.38245 * 120.60869 * 180.02562 * 26 5 4 28 28 N 1.31736 * 118.93525 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46622 * 90.00462 * 1 2 3 30 30 H 1.08998 * 109.46880 * 210.00138 * 1 2 3 31 31 H 1.09003 * 109.47102 * 330.00594 * 1 2 3 32 32 H 1.07995 * 120.47215 * 179.72146 * 4 3 2 33 33 H 1.07997 * 120.04098 * 359.95492 * 11 10 9 34 34 H 1.08005 * 119.84250 * 179.97438 * 12 11 10 35 35 H 1.08001 * 119.80512 * 179.97438 * 13 12 11 36 36 H 1.08004 * 119.96619 * 179.97438 * 14 13 12 37 37 H 0.96995 * 120.00407 * 180.02562 * 20 19 17 38 38 H 0.96994 * 119.99974 * 179.97438 * 27 26 5 39 39 H 0.96999 * 120.00250 * 359.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1450 1.1540 0.0000 4 6 3.4676 1.2049 -0.0005 5 6 4.1904 0.0139 -0.0005 6 6 5.6732 0.0214 -0.0016 7 7 6.4540 -1.0295 0.0040 8 8 7.6182 -0.6898 -0.0019 9 6 7.7038 0.6500 -0.0029 10 6 8.9429 1.4520 -0.0035 11 6 8.8766 2.8465 -0.0040 12 6 10.0376 3.5901 -0.0040 13 6 11.2715 2.9602 -0.0031 14 6 11.3520 1.5819 -0.0026 15 6 10.1936 0.8176 0.0025 16 8 10.2706 -0.5359 0.0087 17 6 11.4987 -1.0796 -0.1076 18 1 12.3718 -0.4440 -0.1181 19 6 11.6409 -2.4549 -0.2138 20 7 12.8392 -2.9854 -0.3268 21 14 10.1308 -3.5543 -0.1950 22 1 9.6416 -3.7472 -1.5837 23 1 10.4847 -4.8714 0.3926 24 1 9.0656 -2.9182 0.6212 25 7 6.4669 1.1129 -0.0026 26 6 3.4729 -1.1965 -0.0005 27 7 4.1374 -2.4087 0.0000 28 7 2.1444 -1.1529 -0.0005 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 3.9791 2.1561 -0.0050 33 1 7.9171 3.3421 -0.0047 34 1 9.9850 4.6689 -0.0048 35 1 12.1757 3.5507 -0.0035 36 1 12.3176 1.0979 -0.0023 37 1 12.9387 -3.9474 -0.4014 38 1 3.6340 -3.2378 0.0004 39 1 5.1072 -2.4302 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809469470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:06 Heat of formation + Delta-G solvation = 105.493507 kcal Electronic energy + Delta-G solvation = -28116.353280 eV Core-core repulsion = 24027.786613 eV Total energy + Delta-G solvation = -4088.566668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.48445 -42.14892 -41.07127 -38.46983 -37.44594 -36.77615 -34.92024 -34.56346 -33.76243 -32.26996 -31.42448 -30.87086 -29.64362 -27.40675 -25.99889 -25.09629 -24.76213 -23.55883 -23.12443 -22.21175 -19.97784 -19.64642 -19.48552 -19.13921 -18.56286 -18.33450 -17.09089 -16.96859 -16.62868 -16.50710 -16.46326 -15.93195 -15.76459 -15.49043 -15.38739 -14.83532 -14.42570 -14.31503 -14.13542 -14.06735 -13.64899 -13.48872 -13.18009 -13.11718 -12.82158 -12.79177 -12.71858 -12.41951 -12.31221 -12.21953 -12.06749 -11.90812 -11.44967 -10.99804 -10.89658 -10.45281 -9.81433 -9.50729 -9.18955 -8.59543 -6.29685 -0.72641 -0.43377 0.13757 0.58147 0.76153 1.25225 1.29065 1.37178 1.50043 1.64053 2.06975 2.21578 2.30899 2.65100 2.69790 2.70518 2.82231 3.03792 3.04332 3.15949 3.45570 3.94794 4.02313 4.15090 4.22334 4.39614 4.40941 4.46816 4.58930 4.70972 4.74222 4.75515 4.80277 4.97443 5.05582 5.28135 5.32582 5.48498 5.55339 5.56232 5.67908 5.79566 5.95110 6.07341 6.42893 6.74981 6.95310 7.08002 7.42965 8.50193 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.003604 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.656508 B = 7767.642642 C = 9909.115995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.366 3.634 3 N -0.566 5.566 4 C 0.240 3.760 5 C -0.228 4.228 6 C 0.243 3.757 7 N -0.431 5.431 8 O 0.064 5.936 9 C 0.267 3.733 10 C -0.139 4.139 11 C -0.011 4.011 12 C -0.181 4.181 13 C -0.029 4.029 14 C -0.238 4.238 15 C 0.162 3.838 16 O -0.220 6.220 17 C -0.395 4.395 18 H 0.100 0.900 19 C 0.028 3.972 20 N -0.907 5.907 21 Si 0.943 3.057 22 H -0.273 1.273 23 H -0.269 1.269 24 H -0.255 1.255 25 N -0.488 5.488 26 C 0.466 3.534 27 N -0.815 5.815 28 N -0.586 5.586 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.193 0.807 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.286 0.714 38 H 0.418 0.582 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.666 10.195 0.650 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.099 3.901 3 N -0.285 5.285 4 C 0.074 3.926 5 C -0.241 4.241 6 C -0.028 4.028 7 N -0.149 5.149 8 O 0.014 5.986 9 C 0.054 3.946 10 C -0.144 4.144 11 C -0.031 4.031 12 C -0.199 4.199 13 C -0.048 4.048 14 C -0.257 4.257 15 C 0.108 3.892 16 O -0.125 6.125 17 C -0.471 4.471 18 H 0.117 0.883 19 C -0.173 4.173 20 N -0.546 5.546 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.179 1.179 25 N -0.224 5.224 26 C 0.216 3.784 27 N -0.362 5.362 28 N -0.313 5.313 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.210 0.790 33 H 0.174 0.826 34 H 0.188 0.812 35 H 0.177 0.823 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.250 0.750 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -19.190 9.238 0.665 21.309 hybrid contribution 1.734 -1.595 -0.067 2.357 sum -17.456 7.643 0.598 19.066 Atomic orbital electron populations 1.20792 0.82281 1.05555 1.05449 1.24064 0.99781 0.82117 0.84160 1.68529 1.08630 1.29525 1.21839 1.23384 0.89005 0.97274 0.82908 1.18459 0.86509 0.96297 1.22841 1.23530 0.95915 0.84459 0.98881 1.74160 0.89806 1.24371 1.26608 1.85507 1.21286 1.24844 1.66958 1.26410 0.94711 0.80896 0.92553 1.16735 0.82995 0.92710 1.21918 1.21167 1.01113 0.88503 0.92286 1.21254 0.90450 1.01579 1.06666 1.21565 0.99849 0.92381 0.90967 1.21333 0.97478 0.95699 1.11239 1.19574 0.93814 0.83340 0.92471 1.83557 1.32211 1.16832 1.79856 1.20808 0.82089 0.92528 1.51702 0.88254 1.25028 0.99672 0.97327 0.95249 1.69671 1.22893 1.13844 1.48178 0.85588 0.80000 0.78279 0.79458 1.19845 1.19403 1.17903 1.72143 0.98157 1.27337 1.24740 1.18608 0.88730 0.86289 0.84769 1.42855 1.11197 1.04934 1.77251 1.68041 1.05651 1.31764 1.25799 0.87597 0.88465 0.87798 0.79006 0.82585 0.81247 0.82264 0.85483 0.90360 0.75041 0.74337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.31 71.24 0.73 -0.33 16 2 C 0.37 8.30 7.64 138.75 1.06 9.36 16 3 N -0.57 -13.78 10.31 -187.25 -1.93 -15.71 16 4 C 0.24 6.23 10.98 84.87 0.93 7.16 16 5 C -0.23 -6.93 5.93 -19.74 -0.12 -7.04 16 6 C 0.24 8.64 7.79 137.29 1.07 9.71 16 7 N -0.43 -17.00 9.25 -57.52 -0.53 -17.53 16 8 O 0.06 2.78 9.98 86.89 0.87 3.64 16 9 C 0.27 10.50 7.95 87.21 0.69 11.20 16 10 C -0.14 -5.14 5.89 -19.99 -0.12 -5.26 16 11 C -0.01 -0.31 9.70 22.51 0.22 -0.09 16 12 C -0.18 -4.12 10.03 22.26 0.22 -3.89 16 13 C -0.03 -0.76 10.03 22.30 0.22 -0.54 16 14 C -0.24 -8.77 9.16 22.36 0.20 -8.57 16 15 C 0.16 6.87 6.66 22.89 0.15 7.02 16 16 O -0.22 -11.13 7.03 -2.81 -0.02 -11.15 16 17 C -0.40 -21.52 9.95 67.92 0.68 -20.85 16 18 H 0.10 5.47 5.44 -2.91 -0.02 5.45 16 19 C 0.03 1.57 5.49 84.84 0.47 2.04 16 20 N -0.91 -51.57 13.96 21.62 0.30 -51.26 16 21 Si 0.94 44.95 28.62 68.60 1.96 46.92 16 22 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 25 N -0.49 -17.16 11.04 -302.15 -3.34 -20.50 16 26 C 0.47 13.46 7.83 133.55 1.05 14.51 16 27 N -0.82 -21.81 8.99 -54.62 -0.49 -22.31 16 28 N -0.59 -15.15 10.35 -184.81 -1.91 -17.07 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.19 4.25 7.96 -2.91 -0.02 4.23 16 33 H 0.16 3.57 7.87 -2.91 -0.02 3.55 16 34 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.13 5.07 5.64 -2.91 -0.02 5.05 16 37 H 0.29 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.42 8.80 8.95 -92.71 -0.83 7.97 16 39 H 0.42 12.77 5.60 -92.71 -0.52 12.25 16 Total: -1.00 -66.75 346.51 2.19 -64.56 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.18 Total: 25.99 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 7.47 Total: 14.42 kcal Atomic # 7 Polarization: -136.48 SS G_CDS: -7.90 Total: -144.38 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.85 Total: -7.50 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.96 Total: 46.92 kcal Total: -66.75 2.19 -64.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809469470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.049 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds