Wall clock time and date at job start Tue Mar 31 2020 22:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.20822 * 120.00212 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.45191 * 117.00242 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.43979 * 328.91263 * 14 13 11 16 16 C 1.54626 * 110.49093 * 206.22742 * 14 13 11 17 17 C 1.54480 * 101.76850 * 216.52562 * 16 14 13 18 18 N 1.46762 * 105.47326 * 25.41609 * 17 16 14 19 19 C 1.40168 * 124.35285 * 162.96193 * 18 17 16 20 20 C 1.38980 * 120.08424 * 89.71805 * 19 18 17 21 21 F 1.35100 * 120.04360 * 0.02562 * 20 19 18 22 22 C 1.38340 * 119.91072 * 179.77353 * 20 19 18 23 23 C 1.38265 * 120.09132 * 0.50642 * 22 20 19 24 24 C 1.38275 * 120.16661 * 359.75147 * 23 22 20 25 25 C 1.38342 * 120.08414 * 359.97438 * 24 23 22 26 26 F 1.35102 * 120.04014 * 180.02562 * 25 24 23 27 27 C 1.34418 * 111.29846 * 342.98493 * 18 17 16 28 28 O 1.21295 * 124.93927 * 180.37443 * 27 18 17 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 31 31 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 1.09004 * 110.97078 * 334.64495 * 16 14 13 35 35 H 1.09004 * 110.97045 * 98.40357 * 16 14 13 36 36 H 1.08996 * 110.24884 * 266.41469 * 17 16 14 37 37 H 1.08999 * 110.31854 * 144.45399 * 17 16 14 38 38 H 1.08009 * 119.95650 * 180.25598 * 22 20 19 39 39 H 1.07994 * 119.91841 * 179.76584 * 23 22 20 40 40 H 1.07995 * 119.95713 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2836 -4.9672 -0.0010 13 8 2.1630 -6.1296 0.0003 14 6 1.3723 -7.3473 0.0002 15 1 0.4312 -7.1901 0.5273 16 6 2.1670 -8.5088 0.6408 17 6 1.7228 -9.7092 -0.2242 18 7 1.3234 -9.1354 -1.5146 19 6 1.1788 -9.8733 -2.6975 20 6 -0.0463 -10.4474 -3.0152 21 9 -1.1006 -10.2947 -2.1842 22 6 -0.1863 -11.1711 -4.1859 23 6 0.8934 -11.3324 -5.0344 24 6 2.1154 -10.7672 -4.7192 25 6 2.2618 -10.0374 -3.5531 26 9 3.4560 -9.4852 -3.2463 27 6 1.1146 -7.8112 -1.4165 28 8 0.7702 -7.0926 -2.3310 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5566 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8906 34 1 3.2406 -8.3415 0.5539 35 1 1.8789 -8.6508 1.6824 36 1 0.8777 -10.2169 0.2406 37 1 2.5511 -10.4044 -0.3607 38 1 -1.1392 -11.6141 -4.4355 39 1 0.7820 -11.9010 -5.9457 40 1 2.9566 -10.8957 -5.3842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:52 Heat of formation + Delta-G solvation = -203.449197 kcal Electronic energy + Delta-G solvation = -29039.025193 eV Core-core repulsion = 24454.079827 eV Total energy + Delta-G solvation = -4584.945366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.24201 -50.20129 -42.49254 -41.23869 -39.68488 -38.10444 -37.61612 -36.07164 -34.01692 -33.03856 -31.50081 -30.21376 -28.89645 -27.45604 -24.94946 -24.40979 -24.10129 -23.09947 -22.13984 -21.26477 -19.46356 -19.44865 -18.84228 -18.78847 -18.44805 -18.18219 -17.45292 -17.25236 -16.91553 -16.79642 -16.53449 -16.32817 -15.95862 -15.62632 -15.59493 -15.38574 -15.19234 -14.93281 -14.59026 -14.18955 -14.02948 -13.77504 -13.66670 -13.40152 -13.18453 -13.09761 -12.96850 -12.87063 -12.71182 -12.31061 -12.18881 -12.15424 -11.89388 -11.71019 -11.21054 -10.82091 -10.58940 -10.38862 -10.12201 -9.95169 -8.74299 -6.46722 -0.35809 -0.21289 0.72212 1.00940 1.34492 1.53702 1.64052 1.69979 1.82693 2.14862 2.58056 2.59075 2.93384 3.12860 3.15810 3.22457 3.44348 3.65110 3.65965 3.72568 3.79442 4.05344 4.09152 4.18777 4.21770 4.24373 4.46737 4.58345 4.64174 4.74711 4.80753 4.85290 4.90887 5.04962 5.11348 5.18774 5.20181 5.22453 5.44511 5.62975 5.84804 6.11817 6.42615 6.55787 6.63592 7.39084 8.65884 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.002403 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.970214 B =11650.963695 C =11779.844885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.044 4.044 3 Si 1.127 2.873 4 H -0.287 1.287 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.620 4.620 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.085 4.085 11 C 0.463 3.537 12 O -0.535 6.535 13 O -0.330 6.330 14 C 0.047 3.953 15 H 0.118 0.882 16 C -0.104 4.104 17 C 0.102 3.898 18 N -0.570 5.570 19 C 0.038 3.962 20 C 0.110 3.890 21 F -0.138 7.138 22 C -0.149 4.149 23 C -0.035 4.035 24 C -0.148 4.148 25 C 0.113 3.887 26 F -0.136 7.136 27 C 0.497 3.503 28 O -0.555 6.555 29 H 0.251 0.749 30 H -0.008 1.008 31 H -0.021 1.021 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.145 0.855 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.176 0.824 39 H 0.197 0.803 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.763 -33.848 -5.371 35.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.241 4.241 3 Si 0.946 3.054 4 H -0.212 1.212 5 H -0.184 1.184 6 H -0.191 1.191 7 C -0.657 4.657 8 H 0.089 0.911 9 C -0.014 4.014 10 C -0.123 4.123 11 C 0.308 3.692 12 O -0.424 6.424 13 O -0.246 6.246 14 C -0.012 4.012 15 H 0.136 0.864 16 C -0.141 4.141 17 C -0.017 4.017 18 N -0.302 5.302 19 C -0.054 4.054 20 C 0.089 3.911 21 F -0.117 7.117 22 C -0.168 4.168 23 C -0.053 4.053 24 C -0.167 4.167 25 C 0.092 3.908 26 F -0.114 7.114 27 C 0.285 3.715 28 O -0.431 6.431 29 H 0.061 0.939 30 H 0.010 0.990 31 H -0.003 1.003 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.163 0.837 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.193 0.807 39 H 0.214 0.786 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.033 -31.880 -5.812 33.160 hybrid contribution -0.724 -1.220 0.204 1.434 sum 6.309 -33.101 -5.608 34.160 Atomic orbital electron populations 1.70901 1.08363 1.29753 1.48445 1.27730 0.96484 1.07485 0.92364 0.82852 0.73978 0.70136 0.78465 1.21232 1.18437 1.19067 1.22423 0.95384 0.92207 1.55729 0.91084 1.18969 0.94323 0.93449 0.94614 1.21402 0.99084 0.85347 1.06428 1.24644 0.87411 0.86634 0.70486 1.90623 1.17415 1.87904 1.46431 1.86661 1.40109 1.13921 1.83910 1.23602 0.99261 0.84807 0.93502 0.86445 1.22941 1.02340 0.87181 1.01661 1.22683 1.03035 0.96631 0.79371 1.45408 1.68169 1.06925 1.09689 1.17688 0.93873 1.02900 0.90893 1.18096 0.82289 0.99580 0.91089 1.91506 1.54954 1.94043 1.71194 1.21644 1.03378 1.00028 0.91793 1.21534 0.89061 0.95157 0.99532 1.21655 1.01870 0.98331 0.94879 1.18062 0.80120 0.96990 0.95580 1.91517 1.43075 1.83672 1.93167 1.21782 0.75732 0.82603 0.91362 1.90748 1.47126 1.59499 1.45761 0.93928 0.99004 1.00301 0.87315 0.85491 0.86762 0.83691 0.87651 0.86373 0.80653 0.78621 0.80508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.10 13.65 21.45 0.29 -61.80 16 2 C -0.04 -2.65 5.46 84.65 0.46 -2.19 16 3 Si 1.13 51.18 29.90 68.60 2.05 53.23 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.62 -36.53 9.11 25.60 0.23 -36.30 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.02 1.36 3.57 29.85 0.11 1.46 16 10 C -0.09 -3.77 5.75 29.85 0.17 -3.60 16 11 C 0.46 20.36 7.95 71.23 0.57 20.93 16 12 O -0.54 -27.57 15.25 21.98 0.34 -27.24 16 13 O -0.33 -11.72 9.95 -48.66 -0.48 -12.20 16 14 C 0.05 1.39 3.22 30.59 0.10 1.48 16 15 H 0.12 3.61 7.26 -2.39 -0.02 3.60 16 16 C -0.10 -1.55 6.92 31.65 0.22 -1.33 16 17 C 0.10 1.44 7.28 86.83 0.63 2.07 16 18 N -0.57 -14.51 2.62 -627.25 -1.64 -16.15 16 19 C 0.04 0.90 5.40 38.16 0.21 1.11 16 20 C 0.11 2.27 7.31 22.47 0.16 2.44 16 21 F -0.14 -3.39 17.08 44.97 0.77 -2.62 16 22 C -0.15 -1.73 10.02 22.30 0.22 -1.51 16 23 C -0.04 -0.25 10.04 22.28 0.22 -0.02 16 24 C -0.15 -1.68 10.02 22.30 0.22 -1.46 16 25 C 0.11 2.30 7.31 22.47 0.16 2.46 16 26 F -0.14 -3.24 17.08 44.97 0.77 -2.47 16 27 C 0.50 17.50 7.67 87.90 0.67 18.17 16 28 O -0.55 -25.93 17.71 0.84 0.01 -25.92 16 29 H 0.25 17.31 7.22 -92.71 -0.67 16.64 16 30 H -0.01 -0.52 7.97 -2.39 -0.02 -0.54 16 31 H -0.02 -1.38 7.97 -2.38 -0.02 -1.40 16 32 H 0.11 4.52 8.14 -2.39 -0.02 4.50 16 33 H 0.13 4.80 8.14 -2.39 -0.02 4.78 16 34 H 0.11 1.52 8.11 -2.39 -0.02 1.50 16 35 H 0.15 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.20 -0.41 8.06 -2.91 -0.02 -0.43 16 40 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -94.23 362.74 7.66 -86.57 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.19 Total: 4.89 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 4.37 Total: 3.71 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.35 Total: -77.96 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: -0.13 Total: -65.36 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 1.54 Total: -5.09 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -94.23 7.66 -86.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.876 kcal (2) G-P(sol) polarization free energy of solvation -94.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds