Wall clock time and date at job start Tue Mar 31 2020 22:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48499 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47411 * 300.00723 * 3 2 1 6 6 H 1.48499 * 109.46832 * 60.00682 * 3 2 1 7 7 C 1.38650 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99839 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99937 * 185.06430 * 9 7 2 11 11 C 1.38872 * 120.06911 * 354.45911 * 10 9 7 12 12 C 1.38101 * 119.93102 * 180.02562 * 11 10 9 13 13 C 1.38311 * 120.06573 * 0.02601 * 12 11 10 14 14 C 1.50694 * 119.92822 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47167 * 90.00078 * 14 13 12 16 16 N 1.30944 * 126.43923 * 89.71270 * 15 14 13 17 17 C 1.35264 * 105.57757 * 179.86635 * 16 15 14 18 18 C 1.48295 * 126.41345 * 180.17020 * 17 16 15 19 19 N 1.31038 * 119.06267 * 0.03065 * 18 17 16 20 20 C 1.35132 * 120.55284 * 179.73454 * 19 18 17 21 21 N 1.31919 * 120.57578 * 180.26874 * 20 19 18 22 22 C 1.46898 * 118.84653 * 0.50172 * 20 19 18 23 23 C 1.34887 * 118.30705 * 359.76684 * 22 20 19 24 24 N 1.36104 * 119.06407 * 180.29740 * 18 17 16 25 25 H 0.97001 * 119.43420 * 0.02562 * 24 18 17 26 26 N 1.30734 * 107.16834 * 0.39751 * 17 16 15 27 27 O 1.21287 * 110.10465 * 359.75185 * 26 17 16 28 28 C 1.38297 * 120.13717 * 0.24849 * 13 12 11 29 29 C 1.38104 * 120.06879 * 359.45329 * 28 13 12 30 30 H 0.97003 * 120.00122 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.03873 * 0.04537 * 11 10 9 32 32 H 1.07996 * 119.96953 * 179.97438 * 12 11 10 33 33 H 1.09001 * 109.46988 * 209.99753 * 14 13 12 34 34 H 1.08997 * 109.47456 * 329.99602 * 14 13 12 35 35 H 0.96992 * 120.00197 * 0.23893 * 21 20 19 36 36 H 1.08007 * 120.84752 * 179.74373 * 22 20 19 37 37 H 1.07995 * 120.35902 * 180.02562 * 23 22 20 38 38 H 1.08001 * 119.96611 * 179.70697 * 28 13 12 39 39 H 1.08002 * 120.03353 * 180.26931 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2123 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1057 11 6 3.4571 -3.4395 0.0922 12 6 4.2024 -4.5971 0.2000 13 6 3.5686 -5.8205 0.3206 14 6 4.3849 -7.0818 0.4374 15 6 4.6644 -7.3666 1.8906 16 7 3.9204 -8.0769 2.7010 17 6 4.5624 -8.0607 3.8914 18 6 4.1202 -8.7291 5.1392 19 7 3.0033 -9.4142 5.1329 20 6 2.5748 -10.0397 6.2515 21 7 1.4531 -10.7340 6.2442 22 6 3.3770 -9.9288 7.4770 23 6 4.5160 -9.2075 7.4328 24 7 4.8833 -8.6088 6.2598 25 1 5.7017 -8.0893 6.2258 26 7 5.6432 -7.3415 3.7373 27 8 5.7155 -6.9368 2.5962 28 6 2.1874 -5.8892 0.3286 29 6 1.4366 -4.7345 0.2274 30 1 -0.4850 0.8401 0.0004 31 1 3.9526 -2.4844 -0.0020 32 1 5.2812 -4.5472 0.1892 33 1 3.8310 -7.9146 0.0040 34 1 5.3271 -6.9556 -0.0958 35 1 0.9299 -10.8017 5.4303 36 1 3.0627 -10.4122 8.3903 37 1 5.1314 -9.1045 8.3143 38 1 1.6954 -6.8464 0.4182 39 1 0.3580 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813351621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:48 Heat of formation + Delta-G solvation = 140.571839 kcal Electronic energy + Delta-G solvation = -26936.114321 eV Core-core repulsion = 22849.068764 eV Total energy + Delta-G solvation = -4087.045557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.91161 -41.08906 -39.22201 -37.07367 -36.24859 -35.73666 -34.15288 -32.87394 -32.36170 -30.98673 -30.38246 -30.28279 -26.85510 -26.26256 -25.29653 -23.79501 -23.61137 -22.10422 -21.87169 -20.69103 -19.29817 -18.48297 -18.26331 -18.12575 -17.94141 -17.05402 -16.78284 -15.51341 -15.47691 -15.15354 -14.76965 -14.69505 -14.50562 -14.13352 -13.80917 -13.59527 -13.57273 -13.21720 -12.86570 -12.73145 -12.32827 -12.26618 -12.06294 -11.67651 -11.46107 -11.35968 -11.32262 -10.92645 -10.74566 -10.67955 -10.54066 -10.50432 -10.01303 -9.75044 -9.45925 -8.95302 -8.32780 -8.06655 -7.37550 -6.56313 -4.15131 0.12715 1.01510 1.08642 1.90986 1.98126 2.09699 2.16336 2.59646 2.82972 3.05717 3.07154 3.12880 3.51937 3.58980 3.87316 4.01052 4.33218 4.39656 4.57024 4.70780 4.96960 5.01909 5.04362 5.08688 5.17774 5.27903 5.31555 5.53894 5.55033 5.63411 5.74017 5.87882 6.08564 6.10906 6.27450 6.51897 6.55199 6.75157 6.91227 7.09405 7.18164 7.31103 7.48910 7.66338 7.73506 7.88207 8.11972 8.88826 9.56683 10.61131 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002273 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.142504 B =12316.707452 C =12708.872580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.095 0.905 9 O -0.171 6.171 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.053 4.053 13 C -0.210 4.210 14 C 0.031 3.969 15 C 0.216 3.784 16 N -0.436 5.436 17 C 0.196 3.804 18 C 0.499 3.501 19 N -0.525 5.525 20 C 0.367 3.633 21 N -0.700 5.700 22 C -0.195 4.195 23 C 0.113 3.887 24 N -0.626 5.626 25 H 0.424 0.576 26 N -0.366 5.366 27 O 0.097 5.903 28 C -0.049 4.049 29 C -0.194 4.194 30 H 0.271 0.729 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.339 0.661 36 H 0.158 0.842 37 H 0.180 0.820 38 H 0.117 0.883 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.906 -14.963 8.605 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.074 6.074 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.072 4.072 13 C -0.212 4.212 14 C -0.008 4.008 15 C -0.004 4.004 16 N -0.168 5.168 17 C -0.076 4.076 18 C 0.221 3.779 19 N -0.254 5.254 20 C 0.087 3.913 21 N -0.324 5.324 22 C -0.225 4.225 23 C -0.012 4.012 24 N -0.247 5.247 25 H 0.261 0.739 26 N -0.072 5.072 27 O 0.032 5.968 28 C -0.068 4.068 29 C -0.214 4.214 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.197 0.803 38 H 0.135 0.865 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.347 -15.716 9.559 22.727 hybrid contribution 1.258 1.624 -0.307 2.077 sum 14.606 -14.093 9.252 22.306 Atomic orbital electron populations 1.70047 1.06034 1.27845 1.45219 1.25339 0.95872 0.98993 0.96308 0.85622 0.79141 0.80162 0.78373 1.19000 1.20010 1.20059 1.21417 0.91911 0.80682 1.52938 0.88797 1.83984 1.34576 1.11600 1.77217 1.19463 0.90370 0.88063 0.91455 1.21137 0.93747 0.98951 1.11779 1.20640 0.98495 0.91523 0.96504 1.18757 0.93401 0.92383 1.16692 1.19104 1.02110 0.98799 0.80800 1.29458 0.81941 0.89561 0.99417 1.72140 1.26338 1.19633 0.98724 1.22858 0.90991 1.00212 0.93574 1.18467 0.87152 0.90103 0.82131 1.69659 1.11666 1.14047 1.30038 1.21091 0.92557 0.90712 0.86971 1.70692 1.05881 1.21360 1.34506 1.22297 0.95389 1.05100 0.99723 1.21933 0.97124 0.93707 0.88417 1.42047 1.25673 1.48602 1.08383 0.73862 1.74812 1.19812 1.13711 0.98887 1.85284 1.41785 1.55137 1.14640 1.20557 0.92608 0.97202 0.96395 1.20229 0.99820 0.90186 1.11123 0.91859 0.85287 0.87008 0.86601 0.87499 0.84591 0.82452 0.80319 0.86486 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -10.59 9.49 30.88 0.29 -10.29 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 9 O -0.17 -4.72 9.76 0.03 0.00 -4.72 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.24 -4.73 9.17 -39.40 -0.36 -5.09 16 12 C -0.05 -0.84 9.69 -39.60 -0.38 -1.23 16 13 C -0.21 -3.05 5.12 -104.58 -0.54 -3.59 16 14 C 0.03 0.31 5.97 -29.04 -0.17 0.14 16 15 C 0.22 2.59 7.73 -13.00 -0.10 2.49 16 16 N -0.44 -6.15 11.55 -9.92 -0.11 -6.26 16 17 C 0.20 2.53 7.97 -156.16 -1.24 1.29 16 18 C 0.50 5.99 7.67 -155.13 -1.19 4.80 16 19 N -0.52 -7.56 10.38 -8.98 -0.09 -7.66 16 20 C 0.37 5.00 7.91 -155.91 -1.23 3.77 16 21 N -0.70 -10.42 14.15 32.02 0.45 -9.97 16 22 C -0.19 -1.76 10.29 -37.27 -0.38 -2.14 16 23 C 0.11 0.66 11.28 -16.56 -0.19 0.47 16 24 N -0.63 -4.78 5.31 -10.61 -0.06 -4.84 16 25 H 0.42 2.22 8.44 -40.82 -0.34 1.87 16 26 N -0.37 -4.30 11.81 30.94 0.37 -3.94 16 27 O 0.10 1.13 11.29 17.97 0.20 1.33 16 28 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 29 C -0.19 -3.91 9.99 -39.40 -0.39 -4.30 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.13 2.59 5.64 -52.48 -0.30 2.29 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.11 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.34 5.02 8.92 -40.82 -0.36 4.66 16 36 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.18 0.17 8.06 -52.49 -0.42 -0.26 16 38 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -34.33 355.88 -8.14 -42.47 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.37 Total: 7.67 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -6.63 Total: -10.46 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 1.31 Total: -56.46 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: 0.20 Total: -3.39 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.33 -8.14 -42.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813351621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.044 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds