Wall clock time and date at job start Tue Mar 31 2020 22:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48499 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47411 * 300.00723 * 3 2 1 6 6 H 1.48499 * 109.46832 * 60.00682 * 3 2 1 7 7 C 1.38650 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99839 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99937 * 185.06430 * 9 7 2 11 11 C 1.38872 * 120.06911 * 354.45911 * 10 9 7 12 12 C 1.38101 * 119.93102 * 180.02562 * 11 10 9 13 13 C 1.38311 * 120.06573 * 0.02601 * 12 11 10 14 14 C 1.50694 * 119.92822 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47167 * 90.00078 * 14 13 12 16 16 N 1.30944 * 126.43923 * 89.71270 * 15 14 13 17 17 C 1.35264 * 105.57757 * 179.86635 * 16 15 14 18 18 C 1.48295 * 126.41345 * 180.17020 * 17 16 15 19 19 N 1.31038 * 119.06267 * 0.03065 * 18 17 16 20 20 C 1.35132 * 120.55284 * 179.73454 * 19 18 17 21 21 N 1.31919 * 120.57578 * 180.26874 * 20 19 18 22 22 C 1.46898 * 118.84653 * 0.50172 * 20 19 18 23 23 C 1.34887 * 118.30705 * 359.76684 * 22 20 19 24 24 N 1.36104 * 119.06407 * 180.29740 * 18 17 16 25 25 H 0.97001 * 119.43420 * 0.02562 * 24 18 17 26 26 N 1.30734 * 107.16834 * 0.39751 * 17 16 15 27 27 O 1.21287 * 110.10465 * 359.75185 * 26 17 16 28 28 C 1.38297 * 120.13717 * 0.24849 * 13 12 11 29 29 C 1.38104 * 120.06879 * 359.45329 * 28 13 12 30 30 H 0.97003 * 120.00122 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.03873 * 0.04537 * 11 10 9 32 32 H 1.07996 * 119.96953 * 179.97438 * 12 11 10 33 33 H 1.09001 * 109.46988 * 209.99753 * 14 13 12 34 34 H 1.08997 * 109.47456 * 329.99602 * 14 13 12 35 35 H 0.96992 * 120.00197 * 0.23893 * 21 20 19 36 36 H 1.08007 * 120.84752 * 179.74373 * 22 20 19 37 37 H 1.07995 * 120.35902 * 180.02562 * 23 22 20 38 38 H 1.08001 * 119.96611 * 179.70697 * 28 13 12 39 39 H 1.08002 * 120.03353 * 180.26931 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2123 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1057 11 6 3.4571 -3.4395 0.0922 12 6 4.2024 -4.5971 0.2000 13 6 3.5686 -5.8205 0.3206 14 6 4.3849 -7.0818 0.4374 15 6 4.6644 -7.3666 1.8906 16 7 3.9204 -8.0769 2.7010 17 6 4.5624 -8.0607 3.8914 18 6 4.1202 -8.7291 5.1392 19 7 3.0033 -9.4142 5.1329 20 6 2.5748 -10.0397 6.2515 21 7 1.4531 -10.7340 6.2442 22 6 3.3770 -9.9288 7.4770 23 6 4.5160 -9.2075 7.4328 24 7 4.8833 -8.6088 6.2598 25 1 5.7017 -8.0893 6.2258 26 7 5.6432 -7.3415 3.7373 27 8 5.7155 -6.9368 2.5962 28 6 2.1874 -5.8892 0.3286 29 6 1.4366 -4.7345 0.2274 30 1 -0.4850 0.8401 0.0004 31 1 3.9526 -2.4844 -0.0020 32 1 5.2812 -4.5472 0.1892 33 1 3.8310 -7.9146 0.0040 34 1 5.3271 -6.9556 -0.0958 35 1 0.9299 -10.8017 5.4303 36 1 3.0627 -10.4122 8.3903 37 1 5.1314 -9.1045 8.3143 38 1 1.6954 -6.8464 0.4182 39 1 0.3580 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813351621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:48 Heat of formation + Delta-G solvation = 114.859226 kcal Electronic energy + Delta-G solvation = -26937.229304 eV Core-core repulsion = 22849.068764 eV Total energy + Delta-G solvation = -4088.160540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.87092 -41.89290 -40.82104 -38.61549 -37.23622 -36.60679 -35.21168 -34.29190 -33.68384 -32.12952 -31.77933 -31.26808 -28.24981 -27.17436 -27.03835 -24.72389 -24.42696 -23.62355 -22.95392 -21.99759 -20.08596 -19.85204 -19.44835 -19.12792 -18.94965 -18.67888 -17.62064 -16.57075 -16.45372 -16.33314 -16.27747 -16.02025 -15.78017 -15.49245 -15.06334 -14.84268 -14.54043 -14.32446 -14.17709 -14.01244 -13.60008 -13.31083 -13.11488 -12.99532 -12.88064 -12.68129 -12.47736 -12.31933 -12.27564 -12.09548 -11.66403 -11.43457 -11.17626 -10.91879 -10.82284 -10.68498 -9.79201 -8.99782 -8.91390 -8.48850 -6.17292 -0.79254 0.11555 0.37523 0.59208 0.60125 1.14158 1.19450 1.35301 1.42812 1.53775 1.63749 1.95629 2.16621 2.64438 2.65662 2.86396 3.16185 3.38671 3.49758 3.58331 3.63766 3.92190 4.04927 4.06997 4.19989 4.26404 4.42741 4.45011 4.58887 4.65240 4.72210 4.79256 4.83264 5.07545 5.12183 5.14706 5.29004 5.36770 5.54950 5.70612 5.71812 5.90334 6.01644 6.19355 6.63074 6.79471 6.95997 7.14442 7.76604 8.74615 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002273 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.142504 B =12316.707452 C =12708.872580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.233 6.233 10 C 0.119 3.881 11 C -0.246 4.246 12 C -0.045 4.045 13 C -0.175 4.175 14 C 0.034 3.966 15 C 0.220 3.780 16 N -0.466 5.466 17 C 0.182 3.818 18 C 0.493 3.507 19 N -0.568 5.568 20 C 0.356 3.644 21 N -0.745 5.745 22 C -0.225 4.225 23 C 0.150 3.850 24 N -0.607 5.607 25 H 0.440 0.560 26 N -0.354 5.354 27 O 0.107 5.893 28 C -0.047 4.047 29 C -0.213 4.213 30 H 0.272 0.728 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.327 0.673 36 H 0.175 0.825 37 H 0.243 0.757 38 H 0.143 0.857 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.045 -16.187 9.697 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.223 4.223 3 Si 0.839 3.161 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.488 4.488 8 H 0.124 0.876 9 O -0.139 6.139 10 C 0.069 3.931 11 C -0.265 4.265 12 C -0.063 4.063 13 C -0.177 4.177 14 C -0.004 4.004 15 C 0.000 4.000 16 N -0.199 5.199 17 C -0.090 4.090 18 C 0.217 3.783 19 N -0.299 5.299 20 C 0.078 3.922 21 N -0.371 5.371 22 C -0.255 4.255 23 C 0.025 3.975 24 N -0.228 5.228 25 H 0.280 0.720 26 N -0.059 5.059 27 O 0.039 5.961 28 C -0.065 4.065 29 C -0.233 4.233 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.178 0.822 33 H 0.157 0.843 34 H 0.173 0.827 35 H 0.141 0.859 36 H 0.192 0.808 37 H 0.259 0.741 38 H 0.161 0.839 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.581 -16.982 10.670 27.340 hybrid contribution -0.043 1.644 -0.608 1.753 sum 18.538 -15.338 10.062 26.080 Atomic orbital electron populations 1.70201 1.08179 1.28778 1.48873 1.26642 0.96829 1.02936 0.95864 0.84514 0.78475 0.74709 0.78435 1.16946 1.19395 1.19671 1.21914 0.92670 0.81248 1.52921 0.87572 1.83954 1.36293 1.12787 1.80913 1.20030 0.92024 0.87740 0.93348 1.21300 0.92676 1.00567 1.11932 1.21137 1.00690 0.90164 0.94281 1.19257 0.92923 0.94192 1.11325 1.19351 1.03994 0.96826 0.80276 1.29567 0.81678 0.89169 0.99550 1.72130 1.27378 1.20692 0.99671 1.23045 0.91338 1.00823 0.93805 1.18483 0.87139 0.89601 0.83126 1.69560 1.13325 1.15671 1.31379 1.21763 0.92447 0.89534 0.88411 1.70765 1.07627 1.24654 1.34033 1.22467 0.96565 1.07736 0.98759 1.22872 0.95902 0.89904 0.88798 1.42208 1.25296 1.47477 1.07783 0.72011 1.74800 1.19113 1.13004 0.98953 1.85276 1.41580 1.54728 1.14506 1.20934 0.93795 0.96787 0.95029 1.20438 0.99861 0.90885 1.12095 0.91869 0.85939 0.82206 0.84265 0.82724 0.85911 0.80807 0.74071 0.83919 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.43 13.67 21.61 0.30 -56.13 16 2 C -0.03 -1.42 5.49 84.83 0.47 -0.95 16 3 Si 1.02 41.87 29.55 68.60 2.03 43.89 16 4 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 8 H 0.11 5.43 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -13.81 9.76 -22.80 -0.22 -14.03 16 10 C 0.12 5.71 6.65 22.57 0.15 5.86 16 11 C -0.25 -9.67 9.17 22.39 0.21 -9.47 16 12 C -0.04 -1.24 9.69 22.25 0.22 -1.03 16 13 C -0.18 -4.36 5.12 -19.83 -0.10 -4.46 16 14 C 0.03 0.48 5.97 29.10 0.17 0.66 16 15 C 0.22 4.31 7.73 88.36 0.68 4.99 16 16 N -0.47 -11.89 11.55 -302.67 -3.49 -15.39 16 17 C 0.18 4.24 7.97 137.25 1.09 5.34 16 18 C 0.49 10.90 7.67 136.89 1.05 11.95 16 19 N -0.57 -16.27 10.38 -182.33 -1.89 -18.16 16 20 C 0.36 9.78 7.91 136.54 1.08 10.86 16 21 N -0.74 -23.45 14.15 -52.62 -0.74 -24.19 16 22 C -0.23 -3.61 10.29 23.77 0.24 -3.36 16 23 C 0.15 1.09 11.28 83.16 0.94 2.03 16 24 N -0.61 -7.03 5.31 -187.49 -1.00 -8.02 16 25 H 0.44 2.57 8.44 -92.71 -0.78 1.79 16 26 N -0.35 -7.02 11.81 -59.25 -0.70 -7.72 16 27 O 0.11 1.99 11.29 74.38 0.84 2.83 16 28 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 29 C -0.21 -8.86 9.99 22.39 0.22 -8.64 16 30 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.12 4.91 5.64 -2.91 -0.02 4.90 16 32 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.14 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.15 0.94 8.08 -2.39 -0.02 0.93 16 35 H 0.33 10.59 8.92 -92.71 -0.83 9.76 16 36 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.24 -1.27 8.06 -2.91 -0.02 -1.29 16 38 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -86.81 355.88 1.95 -84.86 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.45 Total: 22.26 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 7.28 Total: -10.20 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -7.53 Total: -129.62 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.62 Total: -11.20 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -86.81 1.95 -84.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813351621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.723 kcal (2) G-P(sol) polarization free energy of solvation -86.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds