Wall clock time and date at job start Tue Mar 31 2020 22:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99972 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36499 * 126.06669 * 179.72504 * 9 7 2 11 11 C 1.35688 * 107.50635 * 180.02562 * 10 9 7 12 12 N 1.40535 * 126.08531 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00215 * 179.97438 * 12 11 10 14 14 O 1.21621 * 120.00055 * 0.02562 * 13 12 11 15 15 C 1.47465 * 120.00219 * 179.97438 * 13 12 11 16 16 N 1.31999 * 126.44034 * 359.69299 * 15 13 12 17 17 N 1.28463 * 110.21469 * 179.84952 * 16 15 13 18 18 C 1.40085 * 124.93703 * 180.16857 * 17 16 15 19 19 C 1.38862 * 120.07141 * 180.02562 * 18 17 16 20 20 C 1.38121 * 119.92818 * 179.74714 * 19 18 17 21 21 C 1.38282 * 120.06638 * 0.52796 * 20 19 18 22 22 C 1.38276 * 120.14406 * 359.75197 * 21 20 19 23 23 C 1.38113 * 120.06975 * 359.96755 * 22 21 20 24 24 C 1.36116 * 110.13059 * 0.42446 * 17 16 15 25 25 C 1.35753 * 107.06241 * 359.74407 * 24 17 16 26 26 O 1.36079 * 127.26525 * 180.02562 * 25 24 17 27 27 C 1.40667 * 107.83295 * 359.97438 * 11 10 9 28 28 N 1.30909 * 108.38386 * 359.72221 * 27 11 10 29 29 H 0.97005 * 119.99961 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.24565 * 359.97438 * 10 9 7 31 31 H 0.97006 * 119.99716 * 0.02562 * 12 11 10 32 32 H 1.07994 * 120.03887 * 0.02562 * 19 18 17 33 33 H 1.07997 * 119.96067 * 180.27988 * 20 19 18 34 34 H 1.08004 * 119.92660 * 179.76369 * 21 20 19 35 35 H 1.07998 * 119.96832 * 179.97438 * 22 21 20 36 36 H 1.07996 * 120.03780 * 180.02562 * 23 22 21 37 37 H 1.08005 * 126.47184 * 179.76533 * 24 17 16 38 38 H 0.96704 * 113.99786 * 269.99966 * 26 25 24 39 39 H 1.07995 * 125.80699 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8750 -3.6405 -0.0134 11 6 0.8578 -4.5385 -0.0187 12 7 0.9889 -5.9377 -0.0268 13 6 -0.1103 -6.7176 -0.0309 14 8 -1.2157 -6.2104 -0.0281 15 6 0.0273 -8.1857 -0.0399 16 7 1.1577 -8.8673 -0.0504 17 7 0.9154 -10.1288 -0.0529 18 6 1.8919 -11.1332 -0.0599 19 6 1.5152 -12.4698 -0.0626 20 6 2.4805 -13.4577 -0.0748 21 6 3.8206 -13.1169 -0.0735 22 6 4.1989 -11.7870 -0.0650 23 6 3.2386 -10.7944 -0.0586 24 6 -0.4280 -10.3478 -0.0533 25 6 -1.0300 -9.1311 -0.0452 26 8 -2.3660 -8.8728 -0.0421 27 6 -0.3514 -3.8197 -0.0147 28 7 -0.0715 -2.5410 -0.0012 29 1 -0.4850 0.8401 0.0004 30 1 2.9302 -3.8708 -0.0149 31 1 1.8706 -6.3422 -0.0286 32 1 0.4688 -12.7366 -0.0596 33 1 2.1881 -14.4973 -0.0815 34 1 4.5735 -13.8913 -0.0792 35 1 5.2464 -11.5240 -0.0635 36 1 3.5347 -9.7558 -0.0524 37 1 -0.9219 -11.3083 -0.0588 38 1 -2.7531 -8.7927 -0.9246 39 1 -1.3420 -4.2497 -0.0169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813431074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:26 Heat of formation + Delta-G solvation = 105.658089 kcal Electronic energy + Delta-G solvation = -27167.798483 eV Core-core repulsion = 23079.238952 eV Total energy + Delta-G solvation = -4088.559531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.08448 -41.70845 -40.33340 -39.78928 -38.24401 -35.96350 -35.06908 -34.38592 -32.34698 -32.27379 -31.11818 -30.44159 -29.44176 -27.04264 -25.57878 -24.21957 -23.17834 -22.76210 -22.07727 -21.60948 -21.10263 -19.86392 -19.32583 -18.49760 -18.18418 -17.43999 -17.42260 -17.05782 -16.86426 -16.00752 -15.96250 -15.79379 -15.65288 -15.24654 -15.05484 -15.03437 -14.97350 -14.76866 -14.39086 -13.72325 -13.50038 -13.34853 -12.94908 -12.91792 -12.86801 -12.59051 -12.08580 -12.06933 -11.91328 -11.56935 -11.20664 -11.03737 -11.02257 -10.83293 -10.22628 -10.11894 -10.02437 -9.29312 -8.56334 -8.47714 -6.25188 -0.37743 0.33174 0.49639 1.06390 1.15690 1.29190 1.39793 1.58214 1.72077 1.98465 2.05295 2.22486 2.59136 2.77136 2.78671 3.04535 3.08357 3.46838 3.72782 3.78786 3.91821 4.02957 4.21989 4.39146 4.41007 4.41597 4.50389 4.55807 4.65808 4.90474 4.98932 5.02802 5.04719 5.22250 5.26894 5.36498 5.38635 5.51081 5.63831 5.93707 5.97686 6.27019 6.48373 6.69434 6.72922 6.75636 7.24249 7.43830 7.64650 8.51834 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.002244 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.504912 B =12476.397441 C =13913.468214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.008 4.008 3 Si 1.022 2.978 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.165 5.165 10 C -0.079 4.079 11 C -0.048 4.048 12 N -0.603 5.603 13 C 0.583 3.417 14 O -0.553 6.553 15 C -0.042 4.042 16 N -0.256 5.256 17 N -0.218 5.218 18 C 0.101 3.899 19 C -0.123 4.123 20 C -0.095 4.095 21 C -0.113 4.113 22 C -0.103 4.103 23 C -0.127 4.127 24 C -0.020 4.020 25 C 0.036 3.964 26 O -0.465 6.465 27 C -0.056 4.056 28 N -0.307 5.307 29 H 0.277 0.723 30 H 0.188 0.812 31 H 0.418 0.582 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.128 0.872 37 H 0.236 0.764 38 H 0.406 0.594 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 -29.840 -1.896 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.167 1.167 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.067 4.933 10 C -0.230 4.230 11 C -0.154 4.154 12 N -0.247 5.247 13 C 0.369 3.631 14 O -0.430 6.430 15 C -0.202 4.202 16 N -0.093 5.093 17 N -0.002 5.002 18 C 0.011 3.989 19 C -0.143 4.143 20 C -0.113 4.113 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.147 4.147 24 C -0.160 4.160 25 C -0.019 4.019 26 O -0.273 6.273 27 C -0.231 4.231 28 N -0.139 5.139 29 H 0.087 0.913 30 H 0.205 0.795 31 H 0.254 0.746 32 H 0.175 0.825 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.252 0.748 38 H 0.263 0.737 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.799 -28.066 -1.278 29.441 hybrid contribution -0.389 0.114 -0.476 0.625 sum 8.410 -27.953 -1.754 29.243 Atomic orbital electron populations 1.70404 1.08469 1.29209 1.37047 1.26937 0.96522 1.04431 0.94085 0.84559 0.78265 0.73866 0.79282 1.18790 1.20142 1.16687 1.20655 0.93016 0.80782 1.53942 0.84070 1.44861 1.03651 1.04735 1.40097 1.21940 0.98690 0.84201 1.18146 1.17333 0.93309 0.82913 1.21805 1.42255 1.09328 1.02769 1.70305 1.17038 0.84052 0.84185 0.77798 1.90693 1.26778 1.73901 1.51624 1.22276 0.91643 0.93868 1.12438 1.73540 1.25244 0.91023 1.19464 1.42561 1.05671 1.03197 1.48747 1.18086 0.87230 0.86315 1.07227 1.21238 1.02774 0.88758 1.01542 1.21460 0.92117 1.00392 0.97374 1.21765 0.97314 0.96616 0.97392 1.21400 1.00148 0.92535 0.98102 1.21136 0.90727 1.01700 1.01124 1.23433 0.82832 1.01377 1.08395 1.18278 0.85097 0.89992 1.08528 1.84852 1.15029 1.92620 1.34837 1.24165 0.98893 0.90893 1.09147 1.78149 0.91938 1.16287 1.27509 0.91297 0.79545 0.74557 0.82527 0.81527 0.82305 0.83009 0.85450 0.74753 0.73667 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.61 11.81 21.66 0.26 -48.36 16 2 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 3 Si 1.02 39.37 29.55 68.60 2.03 41.40 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.24 -8.51 7.11 99.48 0.71 -7.80 16 7 C -0.35 -19.19 10.25 84.01 0.86 -18.33 16 8 H 0.14 6.64 7.83 -2.91 -0.02 6.62 16 9 N -0.16 -9.51 3.74 -190.00 -0.71 -10.22 16 10 C -0.08 -3.91 11.49 83.38 0.96 -2.95 16 11 C -0.05 -2.38 6.90 37.75 0.26 -2.12 16 12 N -0.60 -24.77 5.46 -306.83 -1.68 -26.45 16 13 C 0.58 24.44 7.79 86.67 0.67 25.12 16 14 O -0.55 -26.99 13.67 -1.94 -0.03 -27.02 16 15 C -0.04 -1.43 7.13 42.44 0.30 -1.12 16 16 N -0.26 -7.40 10.84 -48.05 -0.52 -7.92 16 17 N -0.22 -4.89 3.52 -186.82 -0.66 -5.55 16 18 C 0.10 1.72 6.66 38.12 0.25 1.97 16 19 C -0.12 -1.21 9.43 22.39 0.21 -1.00 16 20 C -0.10 -0.56 10.04 22.25 0.22 -0.34 16 21 C -0.11 -0.72 10.04 22.29 0.22 -0.49 16 22 C -0.10 -1.06 10.04 22.25 0.22 -0.84 16 23 C -0.13 -2.10 9.59 22.39 0.21 -1.88 16 24 C -0.02 -0.39 10.81 83.45 0.90 0.51 16 25 C 0.04 1.02 7.35 22.58 0.17 1.19 16 26 O -0.47 -12.83 13.20 -92.29 -1.22 -14.05 16 27 C -0.06 -3.23 10.85 85.42 0.93 -2.30 16 28 N -0.31 -19.23 10.40 -56.46 -0.59 -19.82 16 29 H 0.28 15.00 8.31 -92.70 -0.77 14.23 16 30 H 0.19 7.35 8.06 -2.91 -0.02 7.33 16 31 H 0.42 14.24 8.54 -92.70 -0.79 13.44 16 32 H 0.16 0.72 6.65 -2.91 -0.02 0.70 16 33 H 0.17 -0.07 8.06 -2.91 -0.02 -0.09 16 34 H 0.16 0.11 8.06 -2.91 -0.02 0.08 16 35 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.13 2.41 7.64 -2.91 -0.02 2.39 16 37 H 0.24 2.10 6.96 -2.91 -0.02 2.08 16 38 H 0.41 7.63 9.07 -74.05 -0.67 6.96 16 39 H 0.17 9.77 5.91 -2.91 -0.02 9.75 16 Total: -1.00 -86.20 350.53 3.45 -82.76 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -0.31 Total: 37.76 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 6.87 Total: -2.54 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -3.90 Total: -118.31 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.24 Total: -41.07 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -86.20 3.45 -82.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813431074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.414 kcal (2) G-P(sol) polarization free energy of solvation -86.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds