Wall clock time and date at job start Tue Mar 31 2020 22:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00356 * 2 1 4 4 H 1.48496 * 109.46990 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46699 * 299.99324 * 3 2 1 6 6 H 1.48495 * 109.47183 * 59.99616 * 3 2 1 7 7 C 1.37884 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00032 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47339 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00493 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47420 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46978 * 64.99928 * 12 11 10 14 14 C 1.34231 * 117.00062 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99988 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99880 * 180.02562 * 14 13 12 17 17 H 1.08997 * 109.40600 * 299.82628 * 16 14 13 18 18 C 1.53078 * 109.39919 * 180.02562 * 16 14 13 19 19 C 1.53350 * 108.42283 * 288.85445 * 18 16 14 20 20 C 1.52919 * 108.67540 * 292.47169 * 19 18 16 21 21 H 1.09005 * 109.29782 * 290.64783 * 20 19 18 22 22 C 1.52997 * 109.30213 * 171.06578 * 20 19 18 23 23 F 1.39905 * 109.47157 * 59.99631 * 22 20 19 24 24 F 1.39900 * 109.47010 * 300.00022 * 22 20 19 25 25 F 1.39897 * 109.47422 * 179.97438 * 22 20 19 26 26 N 1.45755 * 110.48988 * 50.74903 * 20 19 18 27 27 C 1.33354 * 124.10698 * 340.93395 * 26 20 19 28 28 O 1.21281 * 118.24558 * 182.19658 * 27 26 20 29 29 H 0.97005 * 119.99793 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46916 * 59.99274 * 9 7 2 31 31 H 1.09000 * 109.47387 * 299.99507 * 9 7 2 32 32 H 1.09006 * 109.46429 * 59.99800 * 11 10 9 33 33 H 1.09003 * 109.46744 * 300.00727 * 11 10 9 34 34 H 1.08996 * 109.47127 * 304.99924 * 12 11 10 35 35 H 1.09000 * 109.47134 * 185.00047 * 12 11 10 36 36 H 1.08998 * 109.67305 * 169.12594 * 18 16 14 37 37 H 1.08997 * 109.67094 * 48.59079 * 18 16 14 38 38 H 1.08991 * 109.60382 * 172.71250 * 19 18 16 39 39 H 1.09002 * 109.60257 * 52.22466 * 19 18 16 40 40 H 0.97003 * 117.94239 * 160.92439 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.5649 -4.8755 0.0011 12 6 2.6478 -5.9563 0.0004 13 8 3.4000 -5.8886 1.2405 14 6 4.3942 -6.7763 1.3996 15 8 4.6284 -7.5830 0.5311 16 6 5.2181 -6.7669 2.6613 17 1 5.7112 -5.8003 2.7646 18 6 6.2756 -7.8712 2.5863 19 6 5.5710 -9.2267 2.7191 20 6 5.0073 -9.3489 4.1354 21 1 5.8303 -9.4490 4.8432 22 6 4.1147 -10.5886 4.2193 23 9 4.8683 -11.7274 3.9153 24 9 3.0624 -10.4682 3.3053 25 9 3.5974 -10.7042 5.5140 26 7 4.2247 -8.1676 4.4767 27 6 4.3206 -6.9983 3.8429 28 8 3.6467 -6.0722 4.2419 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5570 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 0.9444 -4.9827 -0.8887 33 1 0.9450 -4.9822 0.8913 34 1 3.3207 -5.7959 -0.8419 35 1 2.1817 -6.9376 -0.0887 36 1 6.9920 -7.7489 3.3986 37 1 6.7933 -7.8189 1.6286 38 1 6.2858 -10.0296 2.5395 39 1 4.7582 -9.2888 1.9955 40 1 3.5944 -8.2365 5.2109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815187357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:41 Heat of formation + Delta-G solvation = -323.574523 kcal Electronic energy + Delta-G solvation = -30210.660801 eV Core-core repulsion = 25189.737185 eV Total energy + Delta-G solvation = -5020.923616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.66252 -48.18043 -48.10133 -41.54155 -39.86158 -37.54217 -36.95159 -36.07919 -33.84061 -32.74714 -31.33053 -30.13330 -27.68976 -26.84636 -24.26093 -23.36138 -22.80944 -22.30060 -21.57943 -19.80080 -19.16913 -18.88823 -18.73092 -18.06038 -17.23360 -16.92930 -16.65675 -16.24416 -16.11302 -15.38521 -15.11160 -14.98528 -14.83428 -14.75418 -14.56540 -14.50208 -14.32890 -14.27848 -14.23969 -14.11853 -13.90944 -13.35104 -13.04329 -12.80780 -12.54425 -12.05125 -11.99004 -11.89244 -11.70651 -11.42280 -10.93166 -10.87474 -10.75372 -10.57673 -10.42588 -10.25271 -10.03128 -9.88587 -9.09086 -8.85818 -8.18901 -6.09505 -4.10847 1.69202 1.99521 2.13771 2.39605 2.71881 3.11194 3.30962 3.32106 3.37121 3.43814 3.54975 3.88765 3.96258 4.02853 4.26804 4.34307 4.41578 4.60563 4.73930 4.89807 5.00495 5.13966 5.16552 5.27229 5.38895 5.42095 5.50672 5.85429 5.91047 6.06697 6.08711 6.43069 6.52512 7.08330 7.43122 7.60467 7.61938 7.80752 8.15045 8.54594 9.01714 9.53675 11.02222 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.002332 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.032382 B =12001.846486 C =12081.383614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.061 3.939 12 C 0.074 3.926 13 O -0.324 6.324 14 C 0.474 3.526 15 O -0.502 6.502 16 C -0.103 4.103 17 H 0.152 0.848 18 C -0.104 4.104 19 C -0.144 4.144 20 C 0.102 3.898 21 H 0.125 0.875 22 C 0.442 3.558 23 F -0.173 7.173 24 F -0.173 7.173 25 F -0.180 7.180 26 N -0.715 5.715 27 C 0.535 3.465 28 O -0.497 6.497 29 H 0.263 0.737 30 H 0.006 0.994 31 H 0.008 0.992 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.099 -25.068 9.096 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.238 6.238 14 C 0.316 3.684 15 O -0.391 6.391 16 C -0.125 4.125 17 H 0.170 0.830 18 C -0.141 4.141 19 C -0.182 4.182 20 C -0.006 4.006 21 H 0.142 0.858 22 C 0.387 3.613 23 F -0.155 7.155 24 F -0.154 7.154 25 F -0.161 7.161 26 N -0.372 5.372 27 C 0.319 3.681 28 O -0.369 6.369 29 H 0.073 0.927 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 12.928 -24.592 8.836 29.154 hybrid contribution -0.464 0.405 0.220 0.654 sum 12.464 -24.187 9.056 28.677 Atomic orbital electron populations 1.69973 1.06111 1.27062 1.50669 1.24957 0.94992 0.99468 0.95153 0.86268 0.80027 0.82535 0.77598 1.19458 1.20866 1.20807 1.21082 0.94122 0.89266 1.50646 0.91456 1.20245 0.88759 0.83479 0.95514 1.87907 1.35312 1.12557 1.95227 1.22312 0.93180 0.85489 1.00650 1.23310 0.93747 0.99016 0.83912 1.86704 1.42529 1.53017 1.41587 1.22681 0.79518 0.78550 0.87688 1.90653 1.67583 1.37878 1.42999 1.21254 0.95613 1.05530 0.90099 0.83022 1.21597 0.96126 0.90710 1.05663 1.22141 1.03142 1.00265 0.92635 1.22251 0.93209 0.82512 1.02603 0.85774 1.20866 0.80460 0.86024 0.73993 1.93217 1.75827 1.53461 1.92953 1.93245 1.59324 1.95981 1.66869 1.93213 1.88024 1.96449 1.38404 1.45336 1.44344 1.09950 1.37557 1.19381 0.82915 0.82039 0.83741 1.90931 1.42652 1.39549 1.63728 0.92701 0.97631 0.97428 0.91839 0.93082 0.90180 0.90356 0.88902 0.87843 0.87500 0.88312 0.75126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -15.41 9.43 -34.44 -0.32 -15.74 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.44 5.69 36.00 0.20 5.65 16 10 O -0.39 -9.70 10.30 -38.80 -0.40 -10.09 16 11 C 0.06 1.16 6.33 37.16 0.24 1.40 16 12 C 0.07 1.18 5.84 37.16 0.22 1.40 16 13 O -0.32 -5.56 10.04 -42.03 -0.42 -5.98 16 14 C 0.47 6.51 6.87 36.00 0.25 6.76 16 15 O -0.50 -7.05 14.11 -18.75 -0.26 -7.32 16 16 C -0.10 -1.03 2.94 -93.14 -0.27 -1.30 16 17 H 0.15 1.36 8.14 -51.93 -0.42 0.94 16 18 C -0.10 -0.61 5.14 -26.51 -0.14 -0.75 16 19 C -0.14 -0.84 4.88 -26.59 -0.13 -0.97 16 20 C 0.10 0.56 3.04 -68.37 -0.21 0.35 16 21 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 22 C 0.44 3.05 2.79 37.16 0.10 3.16 16 23 F -0.17 -1.16 16.96 2.25 0.04 -1.12 16 24 F -0.17 -1.62 16.57 2.25 0.04 -1.58 16 25 F -0.18 -1.31 16.83 2.25 0.04 -1.27 16 26 N -0.72 -5.76 5.06 -54.85 -0.28 -6.04 16 27 C 0.53 6.09 6.87 -11.87 -0.08 6.01 16 28 O -0.50 -8.07 17.73 5.56 0.10 -7.97 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 36 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 37 H 0.10 0.62 7.71 -51.93 -0.40 0.22 16 38 H 0.11 0.37 8.05 -51.93 -0.42 -0.04 16 39 H 0.10 0.85 5.79 -51.93 -0.30 0.55 16 40 H 0.41 3.13 8.24 -40.82 -0.34 2.80 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -36.45 356.19 -5.12 -41.57 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -4.80 Total: -3.63 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.24 Total: 7.48 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.46 Total: -32.56 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.99 Total: -31.36 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.11 Total: -3.98 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.45 -5.12 -41.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815187357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -282.006 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -318.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -323.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds