Wall clock time and date at job start Tue Mar 31 2020 22:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00356 * 2 1 4 4 H 1.48496 * 109.46990 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46699 * 299.99324 * 3 2 1 6 6 H 1.48495 * 109.47183 * 59.99616 * 3 2 1 7 7 C 1.37884 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00032 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47339 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00493 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47420 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46978 * 64.99928 * 12 11 10 14 14 C 1.34231 * 117.00062 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99988 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99880 * 180.02562 * 14 13 12 17 17 H 1.08997 * 109.40600 * 299.82628 * 16 14 13 18 18 C 1.53078 * 109.39919 * 180.02562 * 16 14 13 19 19 C 1.53350 * 108.42283 * 288.85445 * 18 16 14 20 20 C 1.52919 * 108.67540 * 292.47169 * 19 18 16 21 21 H 1.09005 * 109.29782 * 290.64783 * 20 19 18 22 22 C 1.52997 * 109.30213 * 171.06578 * 20 19 18 23 23 F 1.39905 * 109.47157 * 59.99631 * 22 20 19 24 24 F 1.39900 * 109.47010 * 300.00022 * 22 20 19 25 25 F 1.39897 * 109.47422 * 179.97438 * 22 20 19 26 26 N 1.45755 * 110.48988 * 50.74903 * 20 19 18 27 27 C 1.33354 * 124.10698 * 340.93395 * 26 20 19 28 28 O 1.21281 * 118.24558 * 182.19658 * 27 26 20 29 29 H 0.97005 * 119.99793 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46916 * 59.99274 * 9 7 2 31 31 H 1.09000 * 109.47387 * 299.99507 * 9 7 2 32 32 H 1.09006 * 109.46429 * 59.99800 * 11 10 9 33 33 H 1.09003 * 109.46744 * 300.00727 * 11 10 9 34 34 H 1.08996 * 109.47127 * 304.99924 * 12 11 10 35 35 H 1.09000 * 109.47134 * 185.00047 * 12 11 10 36 36 H 1.08998 * 109.67305 * 169.12594 * 18 16 14 37 37 H 1.08997 * 109.67094 * 48.59079 * 18 16 14 38 38 H 1.08991 * 109.60382 * 172.71250 * 19 18 16 39 39 H 1.09002 * 109.60257 * 52.22466 * 19 18 16 40 40 H 0.97003 * 117.94239 * 160.92439 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.5649 -4.8755 0.0011 12 6 2.6478 -5.9563 0.0004 13 8 3.4000 -5.8886 1.2405 14 6 4.3942 -6.7763 1.3996 15 8 4.6284 -7.5830 0.5311 16 6 5.2181 -6.7669 2.6613 17 1 5.7112 -5.8003 2.7646 18 6 6.2756 -7.8712 2.5863 19 6 5.5710 -9.2267 2.7191 20 6 5.0073 -9.3489 4.1354 21 1 5.8303 -9.4490 4.8432 22 6 4.1147 -10.5886 4.2193 23 9 4.8683 -11.7274 3.9153 24 9 3.0624 -10.4682 3.3053 25 9 3.5974 -10.7042 5.5140 26 7 4.2247 -8.1676 4.4767 27 6 4.3206 -6.9983 3.8429 28 8 3.6467 -6.0722 4.2419 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5570 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 0.9444 -4.9827 -0.8887 33 1 0.9450 -4.9822 0.8913 34 1 3.3207 -5.7959 -0.8419 35 1 2.1817 -6.9376 -0.0887 36 1 6.9920 -7.7489 3.3986 37 1 6.7933 -7.8189 1.6286 38 1 6.2858 -10.0296 2.5395 39 1 4.7582 -9.2888 1.9955 40 1 3.5944 -8.2365 5.2109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815187357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:41 Heat of formation + Delta-G solvation = -349.921041 kcal Electronic energy + Delta-G solvation = -30211.803272 eV Core-core repulsion = 25189.737185 eV Total energy + Delta-G solvation = -5022.066087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.23747 -48.74282 -48.70905 -42.44795 -40.89266 -38.86980 -38.18139 -37.38247 -34.96971 -34.53039 -32.15036 -31.55979 -29.13906 -28.21204 -24.99850 -24.56814 -24.12619 -23.75875 -22.73501 -20.59135 -19.81589 -19.47505 -19.37554 -18.99304 -18.69511 -18.18843 -17.89762 -17.54393 -17.34075 -16.79113 -16.42034 -16.26059 -15.79069 -15.70345 -15.54837 -15.31975 -15.15811 -15.14220 -14.97893 -14.83741 -14.81251 -14.45065 -14.19975 -13.85952 -13.74610 -13.60049 -13.23242 -12.92569 -12.74145 -12.65759 -12.52816 -12.38479 -12.28035 -12.02557 -11.77898 -11.60485 -11.29317 -11.17256 -10.92343 -10.61393 -10.30886 -8.33894 -6.46365 0.73318 1.09218 1.39335 1.41507 1.46575 1.56131 1.66438 1.82100 2.33718 2.58082 2.80257 2.90497 2.99985 3.01903 3.27380 3.29943 3.49420 3.59422 3.81466 3.84939 4.01649 4.04712 4.34541 4.35998 4.43539 4.51411 4.60604 4.74440 4.81568 4.95464 5.04186 5.13945 5.30920 5.40357 5.52676 5.75323 5.92640 6.45297 6.51880 6.76622 6.79227 7.25124 8.78853 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.002332 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.032382 B =12001.846486 C =12081.383614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.407 6.407 11 C 0.052 3.948 12 C 0.078 3.922 13 O -0.356 6.356 14 C 0.469 3.531 15 O -0.506 6.506 16 C -0.102 4.102 17 H 0.160 0.840 18 C -0.096 4.096 19 C -0.146 4.146 20 C 0.105 3.895 21 H 0.171 0.829 22 C 0.441 3.559 23 F -0.169 7.169 24 F -0.192 7.192 25 F -0.182 7.182 26 N -0.705 5.705 27 C 0.537 3.463 28 O -0.557 6.557 29 H 0.271 0.729 30 H -0.006 1.006 31 H -0.016 1.016 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.069 0.931 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.480 -25.827 9.507 31.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.327 6.327 11 C -0.024 4.024 12 C 0.005 3.995 13 O -0.272 6.272 14 C 0.311 3.689 15 O -0.395 6.395 16 C -0.124 4.124 17 H 0.177 0.823 18 C -0.132 4.132 19 C -0.183 4.183 20 C -0.002 4.002 21 H 0.188 0.812 22 C 0.386 3.614 23 F -0.151 7.151 24 F -0.173 7.173 25 F -0.164 7.164 26 N -0.359 5.359 27 C 0.323 3.677 28 O -0.434 6.434 29 H 0.080 0.920 30 H 0.012 0.988 31 H 0.002 0.998 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.157 0.843 39 H 0.087 0.913 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 15.326 -25.436 9.243 31.102 hybrid contribution -1.238 0.455 0.100 1.322 sum 14.089 -24.981 9.343 30.164 Atomic orbital electron populations 1.70075 1.07773 1.28677 1.50454 1.25999 0.96023 1.03487 0.93821 0.85102 0.78657 0.77096 0.78346 1.18764 1.19366 1.19689 1.21407 0.94113 0.90812 1.52349 0.92062 1.19879 0.88608 0.84515 0.93711 1.87851 1.35456 1.14105 1.95291 1.22640 0.94679 0.83634 1.01487 1.23243 0.93262 0.98993 0.84034 1.86701 1.43909 1.54696 1.41881 1.23374 0.78889 0.77692 0.88925 1.90638 1.67509 1.37729 1.43585 1.21455 0.95625 1.07871 0.87417 0.82311 1.21727 0.95192 0.88813 1.07514 1.22200 1.02924 1.01383 0.91809 1.22607 0.93347 0.80359 1.03846 0.81193 1.21083 0.80147 0.86715 0.73466 1.93225 1.75552 1.53374 1.92906 1.93213 1.60426 1.96101 1.67609 1.93212 1.88139 1.96507 1.38520 1.45299 1.44037 1.09897 1.36700 1.19590 0.82265 0.82109 0.83718 1.90906 1.45133 1.41784 1.65576 0.91966 0.98820 0.99816 0.89679 0.93535 0.89954 0.87441 0.84988 0.87458 0.84343 0.91263 0.74946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.01 0.30 5.46 84.66 0.46 0.76 16 3 Si 0.99 45.29 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -33.80 9.43 25.60 0.24 -33.55 16 8 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.21 12.12 5.69 71.24 0.41 12.52 16 10 O -0.41 -20.93 10.30 -145.57 -1.50 -22.43 16 11 C 0.05 2.03 6.33 71.98 0.46 2.49 16 12 C 0.08 2.51 5.84 71.98 0.42 2.93 16 13 O -0.36 -12.49 10.04 -48.78 -0.49 -12.98 16 14 C 0.47 12.77 6.87 71.24 0.49 13.25 16 15 O -0.51 -13.80 14.11 21.98 0.31 -13.49 16 16 C -0.10 -1.93 2.94 -12.43 -0.04 -1.96 16 17 H 0.16 2.74 8.14 -2.39 -0.02 2.72 16 18 C -0.10 -0.83 5.14 30.74 0.16 -0.67 16 19 C -0.15 -1.27 4.88 30.68 0.15 -1.12 16 20 C 0.10 0.84 3.04 45.10 0.14 0.97 16 21 H 0.17 -0.05 8.14 -2.38 -0.02 -0.07 16 22 C 0.44 5.25 2.79 71.98 0.20 5.45 16 23 F -0.17 -1.86 16.96 44.97 0.76 -1.09 16 24 F -0.19 -3.49 16.57 44.97 0.75 -2.74 16 25 F -0.18 -2.37 16.83 44.97 0.76 -1.61 16 26 N -0.71 -10.42 5.06 -446.64 -2.26 -12.68 16 27 C 0.54 12.06 6.87 87.71 0.60 12.66 16 28 O -0.56 -18.78 17.73 -3.03 -0.05 -18.84 16 29 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 30 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 31 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 2.58 8.13 -2.39 -0.02 2.56 16 35 H 0.11 2.79 8.13 -2.39 -0.02 2.77 16 36 H 0.13 0.18 8.13 -2.39 -0.02 0.16 16 37 H 0.11 0.94 7.71 -2.39 -0.02 0.92 16 38 H 0.14 0.37 8.05 -2.39 -0.02 0.35 16 39 H 0.07 1.08 5.79 -2.39 -0.01 1.06 16 40 H 0.41 6.00 8.24 -92.71 -0.76 5.24 16 Total: -1.00 -82.16 356.19 4.61 -77.55 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.34 Total: 4.02 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 3.69 Total: 13.74 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -1.97 Total: -69.44 kcal Atomic # 8 Polarization: -66.01 SS G_CDS: -1.73 Total: -67.74 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 2.26 Total: -5.45 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -82.16 4.61 -77.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815187357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -272.373 kcal (2) G-P(sol) polarization free energy of solvation -82.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -354.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -349.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds