Wall clock time and date at job start Tue Mar 31 2020 22:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35913 * 117.00005 * 2 1 4 4 C 1.38480 * 119.98209 * 359.97438 * 3 2 1 5 5 C 1.39540 * 119.78787 * 179.97438 * 4 3 2 6 6 C 1.47746 * 120.11939 * 180.02562 * 5 4 3 7 7 O 1.21460 * 120.00385 * 359.97438 * 6 5 4 8 8 O 1.34708 * 119.99404 * 179.97438 * 6 5 4 9 9 C 1.45200 * 116.99762 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47298 * 180.02562 * 9 8 6 11 11 O 1.42900 * 109.47464 * 64.99497 * 10 9 8 12 12 C 1.42892 * 114.00236 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47643 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00600 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99864 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00138 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46957 * 90.00079 * 17 15 13 19 19 H 1.48503 * 109.46764 * 209.99633 * 17 15 13 20 20 H 1.48500 * 109.46983 * 329.99844 * 17 15 13 21 21 C 1.39646 * 119.75473 * 0.02562 * 5 4 3 22 22 C 1.37947 * 119.95987 * 0.02562 * 21 5 4 23 23 N 1.48019 * 119.89334 * 179.97438 * 22 21 5 24 24 O 1.21805 * 120.00169 * 353.54705 * 23 22 21 25 25 O 1.21804 * 120.00380 * 173.55346 * 23 22 21 26 26 C 1.38291 * 120.21442 * 359.97438 * 22 21 5 27 27 C 1.50700 * 119.87814 * 180.02562 * 26 22 21 28 28 H 1.09000 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46958 * 299.99561 * 1 2 3 30 30 H 1.08999 * 109.47500 * 60.00056 * 1 2 3 31 31 H 1.08005 * 120.10594 * 359.97359 * 4 3 2 32 32 H 1.09005 * 109.47018 * 299.99645 * 9 8 6 33 33 H 1.08997 * 109.47525 * 59.99666 * 9 8 6 34 34 H 1.08999 * 109.47355 * 184.99984 * 10 9 8 35 35 H 1.09005 * 109.46772 * 304.99593 * 10 9 8 36 36 H 1.09005 * 109.47242 * 300.00056 * 12 11 10 37 37 H 1.09001 * 109.47425 * 59.99815 * 12 11 10 38 38 H 0.96999 * 120.00264 * 180.02562 * 16 15 13 39 39 H 1.08007 * 120.02071 * 180.27825 * 21 5 4 40 40 H 1.08996 * 109.47210 * 83.09400 * 27 26 22 41 41 H 1.09003 * 109.47271 * 203.09816 * 27 26 22 42 42 H 1.09008 * 109.46954 * 323.09791 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3722 -0.0005 5 6 1.9291 3.6133 0.0000 6 6 1.1313 4.8568 0.0000 7 8 -0.0820 4.8000 -0.0009 8 8 1.7495 6.0536 0.0011 9 6 0.9025 7.2330 0.0016 10 6 1.7767 8.4887 0.0021 11 8 2.5163 8.5549 -1.2188 12 6 3.3697 9.6965 -1.3203 13 6 4.0964 9.6648 -2.6401 14 1 3.9240 8.8537 -3.3321 15 6 4.9820 10.6707 -2.9639 16 7 5.1923 11.6581 -2.1211 17 14 5.8833 10.6309 -4.5997 18 1 5.0812 11.3466 -5.6242 19 1 7.2041 11.2937 -4.4533 20 1 6.0809 9.2209 -5.0218 21 6 3.3242 3.6757 0.0005 22 6 4.0658 2.5125 0.0000 23 7 5.5444 2.5804 0.0000 24 8 6.1048 3.6554 -0.1181 25 8 6.2009 1.5612 0.1180 26 6 3.4323 1.2833 -0.0005 27 6 4.2499 0.0173 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 0.2128 2.3173 -0.0014 32 1 0.2736 7.2291 -0.8887 33 1 0.2729 7.2279 0.8912 34 1 1.1442 9.3718 0.0921 35 1 2.4680 8.4498 0.8440 36 1 2.7705 10.6049 -1.2577 37 1 4.0941 9.6822 -0.5059 38 1 5.8151 12.3660 -2.3490 39 1 3.8223 4.6341 0.0055 40 1 4.5504 -0.2211 1.0197 41 1 3.6531 -0.8007 -0.4041 42 1 5.1376 0.1582 -0.6173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815236793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:29 Heat of formation + Delta-G solvation = -138.769133 kcal Electronic energy + Delta-G solvation = -28885.776994 eV Core-core repulsion = 24414.723882 eV Total energy + Delta-G solvation = -4471.053112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.48706 -41.17565 -40.28255 -38.12779 -37.18867 -36.80316 -36.21033 -33.77015 -32.77404 -31.65008 -30.34929 -28.50468 -28.18625 -26.95145 -26.35616 -23.96144 -22.80713 -22.46678 -22.17247 -21.40534 -19.49863 -18.92822 -17.97688 -17.78102 -17.33760 -16.99385 -16.74750 -16.63673 -16.43758 -16.38961 -15.82882 -15.42166 -14.73282 -14.48322 -14.37002 -14.12398 -13.75022 -13.30475 -13.24891 -13.12807 -12.79652 -12.67119 -12.62436 -12.02569 -12.00839 -11.88972 -11.52804 -11.50351 -11.26115 -11.07463 -10.93696 -10.85671 -10.81584 -10.69075 -10.53681 -10.06276 -10.03425 -9.14185 -9.04715 -8.90405 -8.23372 -6.11652 -4.13439 -0.55874 0.06563 0.98514 1.05896 2.01026 2.31748 2.51766 2.91287 3.31732 3.37020 3.42923 3.82665 3.96002 4.11173 4.19806 4.31109 4.31633 4.54721 4.57472 4.58622 4.66061 4.93581 5.02994 5.05917 5.09667 5.23026 5.25337 5.31433 5.33185 5.46622 5.55462 5.71119 5.76232 5.83586 5.95826 6.24194 6.27907 6.47000 7.02515 7.37961 7.46630 7.49300 7.77762 8.11286 8.49087 8.98378 9.51538 10.99889 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.002832 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.192010 B = 9884.261976 C =11653.704329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.301 6.301 3 C 0.116 3.884 4 C -0.097 4.097 5 C -0.086 4.086 6 C 0.513 3.487 7 O -0.503 6.503 8 O -0.331 6.331 9 C 0.076 3.924 10 C 0.060 3.940 11 O -0.391 6.391 12 C 0.195 3.805 13 C -0.516 4.516 14 H 0.067 0.933 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.908 3.092 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.026 4.026 22 C -0.025 4.025 23 N 0.030 4.970 24 O -0.140 6.140 25 O -0.154 6.154 26 C -0.019 4.019 27 C -0.128 4.128 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.162 0.838 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.006 0.994 37 H 0.009 0.991 38 H 0.264 0.736 39 H 0.177 0.823 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 -24.311 8.139 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.214 6.214 3 C 0.069 3.931 4 C -0.116 4.116 5 C -0.088 4.088 6 C 0.357 3.643 7 O -0.393 6.393 8 O -0.246 6.246 9 C 0.003 3.997 10 C -0.018 4.018 11 O -0.311 6.311 12 C 0.121 3.879 13 C -0.554 4.554 14 H 0.085 0.915 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.046 4.046 22 C -0.108 4.108 23 N 0.550 4.450 24 O -0.358 6.358 25 O -0.368 6.368 26 C -0.021 4.021 27 C -0.184 4.184 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.179 0.821 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.194 0.806 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.970 -24.488 8.014 28.005 hybrid contribution 0.405 0.700 -0.571 0.990 sum -10.565 -23.789 7.443 27.073 Atomic orbital electron populations 1.23273 0.77018 1.05008 1.02168 1.86116 1.22231 1.24540 1.88499 1.18116 0.90380 0.85103 0.99461 1.21720 1.02179 0.90141 0.97546 1.18709 0.91806 0.91492 1.06786 1.20633 0.86094 0.84337 0.73261 1.90832 1.14456 1.88096 1.45953 1.86646 1.41179 1.14144 1.82617 1.23361 0.92531 0.80927 1.02913 1.22337 0.95111 0.93536 0.90773 1.87916 1.59414 1.49116 1.34656 1.20249 0.87831 0.82160 0.97674 1.21027 1.23648 1.08744 1.01947 0.91524 1.24937 0.96592 0.95017 0.97860 1.69953 1.36246 1.11661 1.35892 0.86332 0.78814 0.78466 0.82887 1.20523 1.20993 1.19516 1.21366 0.92772 0.99229 0.91185 1.20451 0.80603 0.95032 1.14719 1.43355 1.02746 1.00720 0.98215 1.94668 1.72065 1.16794 1.52226 1.94465 1.64923 1.24616 1.52751 1.19223 0.91754 0.95232 0.95901 1.21231 1.00014 0.92332 1.04790 0.87218 0.91921 0.91874 0.82088 0.90067 0.90017 0.91626 0.92975 0.97616 0.97351 0.92601 0.80576 0.89003 0.90052 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.30 -2.16 9.41 -19.47 -0.18 -2.35 16 3 C 0.12 1.01 6.65 -39.28 -0.26 0.75 16 4 C -0.10 -0.89 8.58 -39.01 -0.33 -1.22 16 5 C -0.09 -0.99 5.87 -105.00 -0.62 -1.61 16 6 C 0.51 7.03 7.90 34.62 0.27 7.30 16 7 O -0.50 -7.37 16.13 -19.23 -0.31 -7.68 16 8 O -0.33 -5.11 9.44 -43.29 -0.41 -5.52 16 9 C 0.08 1.11 5.85 37.16 0.22 1.32 16 10 C 0.06 1.04 6.33 37.16 0.24 1.28 16 11 O -0.39 -9.22 10.30 -38.79 -0.40 -9.62 16 12 C 0.19 5.27 5.69 36.00 0.20 5.47 16 13 C -0.52 -15.17 9.43 -34.44 -0.32 -15.50 16 14 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.03 -0.32 9.12 -39.16 -0.36 -0.68 16 22 C -0.02 -0.29 6.82 -80.03 -0.55 -0.84 16 23 N 0.03 0.41 4.45 33.92 0.15 0.56 16 24 O -0.14 -2.20 18.45 -29.46 -0.54 -2.74 16 25 O -0.15 -2.00 15.33 -29.46 -0.45 -2.45 16 26 C -0.02 -0.19 5.90 -104.39 -0.62 -0.80 16 27 C -0.13 -1.03 8.51 36.01 0.31 -0.73 16 28 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.16 1.20 5.88 -52.48 -0.31 0.89 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.18 2.30 7.16 -52.48 -0.38 1.93 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.56 7.32 -51.93 -0.38 0.18 16 42 H 0.10 0.90 5.85 -51.92 -0.30 0.60 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -33.92 372.37 -6.83 -40.75 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -5.09 Total: -4.85 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.92 Total: -2.61 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.89 Total: -25.52 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -2.30 Total: -30.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.92 -6.83 -40.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815236793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.014 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds