Wall clock time and date at job start Tue Mar 31 2020 22:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35913 * 117.00005 * 2 1 4 4 C 1.38480 * 119.98209 * 359.97438 * 3 2 1 5 5 C 1.39540 * 119.78787 * 179.97438 * 4 3 2 6 6 C 1.47746 * 120.11939 * 180.02562 * 5 4 3 7 7 O 1.21460 * 120.00385 * 359.97438 * 6 5 4 8 8 O 1.34708 * 119.99404 * 179.97438 * 6 5 4 9 9 C 1.45200 * 116.99762 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47298 * 180.02562 * 9 8 6 11 11 O 1.42900 * 109.47464 * 64.99497 * 10 9 8 12 12 C 1.42892 * 114.00236 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47643 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00600 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99864 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00138 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46957 * 90.00079 * 17 15 13 19 19 H 1.48503 * 109.46764 * 209.99633 * 17 15 13 20 20 H 1.48500 * 109.46983 * 329.99844 * 17 15 13 21 21 C 1.39646 * 119.75473 * 0.02562 * 5 4 3 22 22 C 1.37947 * 119.95987 * 0.02562 * 21 5 4 23 23 N 1.48019 * 119.89334 * 179.97438 * 22 21 5 24 24 O 1.21805 * 120.00169 * 353.54705 * 23 22 21 25 25 O 1.21804 * 120.00380 * 173.55346 * 23 22 21 26 26 C 1.38291 * 120.21442 * 359.97438 * 22 21 5 27 27 C 1.50700 * 119.87814 * 180.02562 * 26 22 21 28 28 H 1.09000 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46958 * 299.99561 * 1 2 3 30 30 H 1.08999 * 109.47500 * 60.00056 * 1 2 3 31 31 H 1.08005 * 120.10594 * 359.97359 * 4 3 2 32 32 H 1.09005 * 109.47018 * 299.99645 * 9 8 6 33 33 H 1.08997 * 109.47525 * 59.99666 * 9 8 6 34 34 H 1.08999 * 109.47355 * 184.99984 * 10 9 8 35 35 H 1.09005 * 109.46772 * 304.99593 * 10 9 8 36 36 H 1.09005 * 109.47242 * 300.00056 * 12 11 10 37 37 H 1.09001 * 109.47425 * 59.99815 * 12 11 10 38 38 H 0.96999 * 120.00264 * 180.02562 * 16 15 13 39 39 H 1.08007 * 120.02071 * 180.27825 * 21 5 4 40 40 H 1.08996 * 109.47210 * 83.09400 * 27 26 22 41 41 H 1.09003 * 109.47271 * 203.09816 * 27 26 22 42 42 H 1.09008 * 109.46954 * 323.09791 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3722 -0.0005 5 6 1.9291 3.6133 0.0000 6 6 1.1313 4.8568 0.0000 7 8 -0.0820 4.8000 -0.0009 8 8 1.7495 6.0536 0.0011 9 6 0.9025 7.2330 0.0016 10 6 1.7767 8.4887 0.0021 11 8 2.5163 8.5549 -1.2188 12 6 3.3697 9.6965 -1.3203 13 6 4.0964 9.6648 -2.6401 14 1 3.9240 8.8537 -3.3321 15 6 4.9820 10.6707 -2.9639 16 7 5.1923 11.6581 -2.1211 17 14 5.8833 10.6309 -4.5997 18 1 5.0812 11.3466 -5.6242 19 1 7.2041 11.2937 -4.4533 20 1 6.0809 9.2209 -5.0218 21 6 3.3242 3.6757 0.0005 22 6 4.0658 2.5125 0.0000 23 7 5.5444 2.5804 0.0000 24 8 6.1048 3.6554 -0.1181 25 8 6.2009 1.5612 0.1180 26 6 3.4323 1.2833 -0.0005 27 6 4.2499 0.0173 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 0.2128 2.3173 -0.0014 32 1 0.2736 7.2291 -0.8887 33 1 0.2729 7.2279 0.8912 34 1 1.1442 9.3718 0.0921 35 1 2.4680 8.4498 0.8440 36 1 2.7705 10.6049 -1.2577 37 1 4.0941 9.6822 -0.5059 38 1 5.8151 12.3660 -2.3490 39 1 3.8223 4.6341 0.0055 40 1 4.5504 -0.2211 1.0197 41 1 3.6531 -0.8007 -0.4041 42 1 5.1376 0.1582 -0.6173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815236793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:28 Heat of formation + Delta-G solvation = -159.079714 kcal Electronic energy + Delta-G solvation = -28886.657727 eV Core-core repulsion = 24414.723882 eV Total energy + Delta-G solvation = -4471.933845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.50565 -42.09734 -41.21212 -38.97791 -38.64747 -37.87270 -37.59662 -34.96683 -34.59538 -32.47035 -31.77234 -29.48256 -28.90508 -28.63478 -27.32051 -24.97076 -24.52092 -23.69170 -23.38117 -22.45465 -20.42949 -19.95466 -18.98804 -18.80969 -18.70681 -18.20958 -18.01643 -17.73072 -17.44613 -17.16968 -16.94526 -16.81171 -16.41073 -16.20165 -15.30535 -15.05758 -14.84809 -14.51116 -14.31824 -14.01851 -13.84571 -13.75272 -13.48269 -13.38800 -13.25783 -12.94518 -12.72443 -12.61665 -12.55211 -12.49017 -12.41671 -12.35683 -12.09849 -11.89767 -11.84110 -11.77760 -11.30001 -10.91026 -10.88205 -10.28791 -9.76969 -8.33449 -6.45250 -1.48149 -0.86011 0.04335 0.10380 1.02488 1.28762 1.39122 1.42002 1.54037 1.92269 2.01275 2.33554 2.94447 3.00767 3.03843 3.16705 3.27939 3.41336 3.47044 3.74688 3.85885 4.07391 4.09772 4.21391 4.34659 4.36600 4.40772 4.45549 4.54494 4.59561 4.64430 4.64755 4.77586 4.83758 4.83919 4.95791 5.12337 5.17810 5.33814 5.53142 5.89903 5.94020 6.36132 6.39484 6.49181 6.78072 7.26265 8.78734 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.002832 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.192010 B = 9884.261976 C =11653.704329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.300 6.300 3 C 0.130 3.870 4 C -0.082 4.082 5 C -0.094 4.094 6 C 0.516 3.484 7 O -0.512 6.512 8 O -0.352 6.352 9 C 0.079 3.921 10 C 0.050 3.950 11 O -0.410 6.410 12 C 0.209 3.791 13 C -0.550 4.550 14 H 0.059 0.941 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.980 3.020 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.268 1.268 21 C -0.037 4.037 22 C -0.035 4.035 23 N 0.032 4.968 24 O -0.215 6.215 25 O -0.114 6.114 26 C -0.014 4.014 27 C -0.127 4.127 28 H 0.134 0.866 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.183 0.817 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.056 0.944 36 H -0.006 1.006 37 H -0.011 1.011 38 H 0.271 0.729 39 H 0.156 0.844 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.477 -26.842 7.821 30.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.213 6.213 3 C 0.083 3.917 4 C -0.101 4.101 5 C -0.096 4.096 6 C 0.361 3.639 7 O -0.403 6.403 8 O -0.268 6.268 9 C 0.007 3.993 10 C -0.027 4.027 11 O -0.330 6.330 12 C 0.134 3.866 13 C -0.588 4.588 14 H 0.077 0.923 15 C -0.190 4.190 16 N -0.567 5.567 17 Si 0.802 3.198 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.192 1.192 21 C -0.056 4.056 22 C -0.118 4.118 23 N 0.548 4.452 24 O -0.415 6.415 25 O -0.342 6.342 26 C -0.016 4.016 27 C -0.183 4.183 28 H 0.152 0.848 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.200 0.800 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.012 0.988 37 H 0.006 0.994 38 H 0.080 0.920 39 H 0.173 0.827 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.383 -26.870 7.693 30.570 hybrid contribution 0.693 1.212 -0.368 1.444 sum -11.690 -25.658 7.325 29.132 Atomic orbital electron populations 1.23642 0.75014 1.07019 1.02983 1.86146 1.24168 1.23169 1.87832 1.18039 0.89893 0.85697 0.98068 1.21906 1.03201 0.89118 0.95895 1.18593 0.91155 0.91532 1.08288 1.20874 0.86153 0.84244 0.72666 1.90815 1.14693 1.88149 1.46638 1.86641 1.42079 1.15044 1.82997 1.23358 0.91769 0.79636 1.04567 1.22695 0.95337 0.96199 0.88426 1.87856 1.59527 1.47647 1.37956 1.19854 0.87635 0.82874 0.96215 1.21374 1.25143 1.09230 1.03046 0.92313 1.25908 0.97002 0.94231 1.01874 1.70048 1.36675 1.12190 1.37824 0.85236 0.77785 0.78710 0.78034 1.19058 1.19806 1.19213 1.21186 0.93282 0.98747 0.92415 1.20431 0.79102 0.95855 1.16429 1.43593 1.03645 1.00308 0.97664 1.94689 1.72936 1.17445 1.56444 1.94413 1.65706 1.24202 1.49873 1.19469 0.92597 0.94948 0.94595 1.21312 0.99716 0.91822 1.05432 0.84770 0.90911 0.91210 0.79968 0.90217 0.86435 0.89537 0.92603 0.98801 0.99360 0.91975 0.82671 0.87731 0.88189 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.81 113.37 1.11 1.14 16 2 O -0.30 -3.22 9.41 -92.57 -0.87 -4.09 16 3 C 0.13 1.94 6.65 22.47 0.15 2.09 16 4 C -0.08 -1.33 8.58 22.64 0.19 -1.14 16 5 C -0.09 -2.12 5.87 -20.11 -0.12 -2.24 16 6 C 0.52 13.96 7.90 70.34 0.56 14.51 16 7 O -0.51 -14.29 16.13 19.96 0.32 -13.97 16 8 O -0.35 -11.06 9.44 -53.52 -0.51 -11.57 16 9 C 0.08 2.29 5.85 71.98 0.42 2.71 16 10 C 0.05 1.76 6.33 71.98 0.46 2.21 16 11 O -0.41 -19.99 10.30 -145.58 -1.50 -21.49 16 12 C 0.21 11.76 5.69 71.23 0.41 12.17 16 13 C -0.55 -33.34 9.43 25.60 0.24 -33.10 16 14 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 15 C 0.01 0.50 5.46 84.65 0.46 0.97 16 16 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 17 Si 0.98 45.31 29.54 68.60 2.03 47.34 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C -0.04 -0.93 9.12 22.54 0.21 -0.73 16 22 C -0.03 -0.82 6.82 36.32 0.25 -0.58 16 23 N 0.03 0.90 4.45 -46.60 -0.21 0.69 16 24 O -0.22 -7.41 18.45 18.88 0.35 -7.06 16 25 O -0.11 -2.91 15.33 18.88 0.29 -2.62 16 26 C -0.01 -0.25 5.90 -19.71 -0.12 -0.37 16 27 C -0.13 -1.73 8.51 71.24 0.61 -1.12 16 28 H 0.13 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.07 0.20 7.66 -2.39 -0.02 0.18 16 30 H 0.07 0.24 7.66 -2.39 -0.02 0.22 16 31 H 0.18 2.15 5.88 -2.91 -0.02 2.13 16 32 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 36 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.16 4.56 7.16 -2.91 -0.02 4.54 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 1.02 7.32 -2.39 -0.02 1.00 16 42 H 0.09 1.47 5.85 -2.38 -0.01 1.45 16 Total: -1.00 -75.06 372.37 6.08 -68.98 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.07 Total: 3.15 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 4.82 Total: -3.47 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.08 Total: -55.19 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -1.92 Total: -60.80 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.06 6.08 -68.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815236793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.100 kcal (2) G-P(sol) polarization free energy of solvation -75.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds