Wall clock time and date at job start Tue Mar 31 2020 22:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 119.97062 * 2 1 4 4 C 1.38711 * 119.94106 * 179.76717 * 3 2 1 5 5 O 1.35905 * 120.05104 * 180.25607 * 4 3 2 6 6 C 1.42904 * 116.99539 * 180.23057 * 5 4 3 7 7 C 1.50699 * 109.46811 * 179.97438 * 6 5 4 8 8 O 1.20821 * 120.00409 * 0.02562 * 7 6 5 9 9 O 1.34228 * 119.99928 * 179.97438 * 7 6 5 10 10 C 1.45201 * 117.00237 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.42900 * 109.47287 * 65.00290 * 11 10 9 13 13 C 1.42904 * 114.00363 * 179.97438 * 12 11 10 14 14 C 1.50692 * 109.47477 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99633 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00465 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99683 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00595 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47132 * 90.00004 * 18 16 14 20 20 H 1.48495 * 109.47022 * 210.00177 * 18 16 14 21 21 H 1.48503 * 109.46612 * 330.00090 * 18 16 14 22 22 C 1.38753 * 119.89074 * 0.47993 * 4 3 2 23 23 C 1.38119 * 119.94003 * 359.77263 * 22 4 3 24 24 C 1.38237 * 119.97355 * 180.26964 * 2 1 3 25 25 N 1.48004 * 119.94647 * 359.97438 * 24 2 1 26 26 O 1.21792 * 120.00477 * 173.49195 * 25 24 2 27 27 O 1.21808 * 119.99444 * 353.48371 * 25 24 2 28 28 H 1.08996 * 109.47817 * 262.78984 * 1 2 3 29 29 H 1.09009 * 109.46984 * 142.78763 * 1 2 3 30 30 H 1.09008 * 109.47277 * 22.79219 * 1 2 3 31 31 H 1.07995 * 120.02529 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.46986 * 299.99813 * 6 5 4 33 33 H 1.09004 * 109.46956 * 59.99603 * 6 5 4 34 34 H 1.09001 * 109.46975 * 300.00435 * 10 9 7 35 35 H 1.09004 * 109.46563 * 60.00419 * 10 9 7 36 36 H 1.09008 * 109.47171 * 185.00323 * 11 10 9 37 37 H 1.08998 * 109.47701 * 304.99959 * 11 10 9 38 38 H 1.08999 * 109.47002 * 300.00416 * 13 12 11 39 39 H 1.08999 * 109.47050 * 59.99553 * 13 12 11 40 40 H 0.96997 * 120.00417 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.02894 * 179.74871 * 22 4 3 42 42 H 1.08005 * 119.96722 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1970 0.0000 4 6 3.5843 1.1963 0.0049 5 8 4.2655 2.3723 0.0102 6 6 5.6924 2.2954 0.0099 7 6 6.2704 3.6871 0.0155 8 8 5.5358 4.6464 0.0198 9 8 7.6014 3.8611 0.0167 10 6 8.0874 5.2293 0.0227 11 6 9.6173 5.2271 0.0226 12 8 10.0928 4.6625 -1.2009 13 6 11.5173 4.6136 -1.3038 14 6 11.9049 4.0042 -2.6264 15 1 11.1399 3.6863 -3.3193 16 6 13.2360 3.8533 -2.9523 17 7 14.1676 4.2408 -2.1086 18 14 13.7165 3.0972 -4.5914 19 1 13.8444 4.1682 -5.6121 20 1 15.0152 2.3913 -4.4491 21 1 12.6718 2.1309 -5.0160 22 6 4.2752 -0.0070 -0.0003 23 6 3.5805 -1.2008 -0.0056 24 6 2.1976 -1.1975 -0.0056 25 7 1.4558 -2.4782 -0.0111 26 8 2.0572 -3.5299 -0.1356 27 8 0.2436 -2.4803 0.1091 28 1 -0.3634 -0.1290 1.0195 29 1 -0.3633 -0.8185 -0.6216 30 1 -0.3634 0.9475 -0.3981 31 1 1.6572 2.1322 -0.0004 32 1 6.0275 1.7589 0.8974 33 1 6.0276 1.7666 -0.8825 34 1 7.7251 5.7475 -0.8651 35 1 7.7245 5.7398 0.9149 36 1 9.9822 6.2499 0.1168 37 1 9.9799 4.6334 0.8618 38 1 11.9212 5.6238 -1.2373 39 1 11.9196 4.0075 -0.4921 40 1 15.1041 4.1351 -2.3379 41 1 5.3552 -0.0102 -0.0006 42 1 4.1178 -2.1377 -0.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815243033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:39 Heat of formation + Delta-G solvation = -142.044518 kcal Electronic energy + Delta-G solvation = -27537.597646 eV Core-core repulsion = 23066.402502 eV Total energy + Delta-G solvation = -4471.195144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56513 -41.25171 -40.38731 -38.52068 -37.19408 -36.93946 -36.22463 -33.40202 -32.87238 -32.09873 -30.69030 -29.34664 -28.01567 -26.98025 -26.10943 -23.41814 -23.09619 -22.48497 -22.12999 -21.18919 -19.41930 -18.99682 -18.94424 -17.90178 -17.68175 -17.39007 -17.19288 -16.53954 -16.27838 -15.98887 -15.38913 -15.34903 -14.87406 -14.56509 -14.33796 -14.27327 -14.14580 -13.83506 -13.40315 -13.31422 -13.11402 -12.79374 -12.69447 -12.09688 -11.90488 -11.87488 -11.69367 -11.57578 -11.42504 -11.09338 -11.03296 -10.94198 -10.88198 -10.65942 -10.58491 -10.14473 -9.78979 -9.39325 -9.22892 -8.98682 -8.31869 -6.20167 -4.22431 -0.49414 0.32859 0.95680 1.09522 1.58884 1.87322 2.67326 2.92402 3.24158 3.29616 3.34232 3.75344 3.80821 3.96804 4.22129 4.25011 4.33072 4.38650 4.45799 4.47376 4.59201 4.77548 4.97949 5.01868 5.07672 5.10948 5.16538 5.26445 5.28027 5.35546 5.55525 5.56849 5.69534 5.76835 5.89417 6.11354 6.27274 6.36497 6.94326 7.29210 7.36810 7.47787 7.68869 8.02659 8.40577 8.89446 9.42691 10.91215 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013932 B = 0.001790 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.278519 B =15638.860717 C =17210.596304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.026 3.974 3 C -0.155 4.155 4 C 0.194 3.806 5 O -0.281 6.281 6 C 0.060 3.940 7 C 0.465 3.535 8 O -0.491 6.491 9 O -0.335 6.335 10 C 0.077 3.923 11 C 0.061 3.939 12 O -0.392 6.392 13 C 0.194 3.806 14 C -0.517 4.517 15 H 0.066 0.934 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.909 3.091 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.217 4.217 23 C -0.004 4.004 24 C -0.091 4.091 25 N 0.039 4.961 26 O -0.172 6.172 27 O -0.165 6.165 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.157 0.843 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.265 0.735 41 H 0.157 0.843 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.096 -6.932 8.121 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.024 3.976 3 C -0.174 4.174 4 C 0.146 3.854 5 O -0.192 6.192 6 C -0.015 4.015 7 C 0.306 3.694 8 O -0.378 6.378 9 O -0.251 6.251 10 C 0.004 3.996 11 C -0.017 4.017 12 O -0.312 6.312 13 C 0.120 3.880 14 C -0.555 4.555 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.736 3.264 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.236 4.236 23 C -0.023 4.023 24 C -0.175 4.175 25 N 0.554 4.446 26 O -0.385 6.385 27 O -0.378 6.378 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.175 0.825 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.174 0.826 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -23.907 -5.863 7.998 25.883 hybrid contribution 0.753 -0.516 -0.555 1.068 sum -23.154 -6.379 7.443 25.144 Atomic orbital electron populations 1.21354 0.87900 1.04854 1.04910 1.19622 0.98070 0.89457 0.90439 1.20341 0.90675 0.98530 1.07850 1.19299 0.91889 0.84577 0.89632 1.86140 1.18870 1.27379 1.86803 1.22120 0.78717 0.94171 1.06520 1.22585 0.82090 0.90840 0.73934 1.90717 1.60728 1.42303 1.44083 1.86541 1.21609 1.33883 1.83034 1.23351 0.94603 0.78683 1.02986 1.22339 0.90138 0.98605 0.90611 1.87913 1.26272 1.82478 1.34513 1.20254 0.74101 0.95991 0.97625 1.21022 0.91990 1.40726 1.01764 0.91529 1.24954 0.95984 0.95655 0.97900 1.69953 1.00544 1.47313 1.35841 0.86319 0.77887 0.79297 0.82892 1.20422 1.21009 1.19618 1.21359 1.01814 0.90558 1.09900 1.20822 0.90837 1.00261 0.90416 1.20829 0.92398 0.83409 1.20890 1.43445 1.01052 1.02631 0.97443 1.94551 1.70225 1.19958 1.53742 1.94467 0.96318 1.93731 1.53250 0.88921 0.88052 0.90423 0.82498 0.86709 0.86423 0.90080 0.90016 0.91571 0.93024 0.97533 0.97423 0.92556 0.82558 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 8.67 36.00 0.31 -0.46 16 2 C 0.03 0.19 5.88 -104.65 -0.62 -0.43 16 3 C -0.15 -1.08 9.61 -39.43 -0.38 -1.46 16 4 C 0.19 1.45 6.69 -39.22 -0.26 1.19 16 5 O -0.28 -2.55 9.67 -39.40 -0.38 -2.93 16 6 C 0.06 0.48 5.33 36.01 0.19 0.67 16 7 C 0.46 5.70 8.03 36.01 0.29 5.99 16 8 O -0.49 -7.40 16.25 -25.47 -0.41 -7.82 16 9 O -0.33 -4.70 10.19 -42.02 -0.43 -5.13 16 10 C 0.08 1.07 5.84 37.16 0.22 1.29 16 11 C 0.06 1.00 6.33 37.16 0.24 1.24 16 12 O -0.39 -8.89 10.30 -38.80 -0.40 -9.29 16 13 C 0.19 5.08 5.69 36.00 0.20 5.28 16 14 C -0.52 -14.72 9.43 -34.45 -0.32 -15.04 16 15 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 18 Si 0.91 21.23 29.54 -169.99 -5.02 16.20 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.22 -1.34 9.04 -39.43 -0.36 -1.70 16 23 C 0.00 -0.03 9.55 -39.61 -0.38 -0.41 16 24 C -0.09 -0.78 6.83 -79.94 -0.55 -1.33 16 25 N 0.04 0.42 4.45 33.97 0.15 0.57 16 26 O -0.17 -2.01 18.46 -29.46 -0.54 -2.55 16 27 O -0.16 -1.77 15.35 -29.46 -0.45 -2.22 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.68 5.87 -51.92 -0.30 0.37 16 30 H 0.08 0.31 8.03 -51.92 -0.42 -0.11 16 31 H 0.16 0.87 8.05 -52.49 -0.42 0.45 16 32 H 0.12 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.12 0.71 7.66 -51.93 -0.40 0.31 16 34 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 35 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 36 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.16 0.60 6.30 -52.49 -0.33 0.27 16 42 H 0.16 0.90 7.62 -52.48 -0.40 0.50 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -34.52 375.51 -7.78 -42.29 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -5.17 Total: -5.82 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -1.51 Total: -3.66 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.89 Total: -24.74 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -2.62 Total: -29.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.52 -7.78 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815243033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.752 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds