Wall clock time and date at job start Tue Mar 31 2020 22:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 119.97062 * 2 1 4 4 C 1.38711 * 119.94106 * 179.76717 * 3 2 1 5 5 O 1.35905 * 120.05104 * 180.25607 * 4 3 2 6 6 C 1.42904 * 116.99539 * 180.23057 * 5 4 3 7 7 C 1.50699 * 109.46811 * 179.97438 * 6 5 4 8 8 O 1.20821 * 120.00409 * 0.02562 * 7 6 5 9 9 O 1.34228 * 119.99928 * 179.97438 * 7 6 5 10 10 C 1.45201 * 117.00237 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47021 * 180.02562 * 10 9 7 12 12 O 1.42900 * 109.47287 * 65.00290 * 11 10 9 13 13 C 1.42904 * 114.00363 * 179.97438 * 12 11 10 14 14 C 1.50692 * 109.47477 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99633 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00465 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99683 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00595 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47132 * 90.00004 * 18 16 14 20 20 H 1.48495 * 109.47022 * 210.00177 * 18 16 14 21 21 H 1.48503 * 109.46612 * 330.00090 * 18 16 14 22 22 C 1.38753 * 119.89074 * 0.47993 * 4 3 2 23 23 C 1.38119 * 119.94003 * 359.77263 * 22 4 3 24 24 C 1.38237 * 119.97355 * 180.26964 * 2 1 3 25 25 N 1.48004 * 119.94647 * 359.97438 * 24 2 1 26 26 O 1.21792 * 120.00477 * 173.49195 * 25 24 2 27 27 O 1.21808 * 119.99444 * 353.48371 * 25 24 2 28 28 H 1.08996 * 109.47817 * 262.78984 * 1 2 3 29 29 H 1.09009 * 109.46984 * 142.78763 * 1 2 3 30 30 H 1.09008 * 109.47277 * 22.79219 * 1 2 3 31 31 H 1.07995 * 120.02529 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.46986 * 299.99813 * 6 5 4 33 33 H 1.09004 * 109.46956 * 59.99603 * 6 5 4 34 34 H 1.09001 * 109.46975 * 300.00435 * 10 9 7 35 35 H 1.09004 * 109.46563 * 60.00419 * 10 9 7 36 36 H 1.09008 * 109.47171 * 185.00323 * 11 10 9 37 37 H 1.08998 * 109.47701 * 304.99959 * 11 10 9 38 38 H 1.08999 * 109.47002 * 300.00416 * 13 12 11 39 39 H 1.08999 * 109.47050 * 59.99553 * 13 12 11 40 40 H 0.96997 * 120.00417 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.02894 * 179.74871 * 22 4 3 42 42 H 1.08005 * 119.96722 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1970 0.0000 4 6 3.5843 1.1963 0.0049 5 8 4.2655 2.3723 0.0102 6 6 5.6924 2.2954 0.0099 7 6 6.2704 3.6871 0.0155 8 8 5.5358 4.6464 0.0198 9 8 7.6014 3.8611 0.0167 10 6 8.0874 5.2293 0.0227 11 6 9.6173 5.2271 0.0226 12 8 10.0928 4.6625 -1.2009 13 6 11.5173 4.6136 -1.3038 14 6 11.9049 4.0042 -2.6264 15 1 11.1399 3.6863 -3.3193 16 6 13.2360 3.8533 -2.9523 17 7 14.1676 4.2408 -2.1086 18 14 13.7165 3.0972 -4.5914 19 1 13.8444 4.1682 -5.6121 20 1 15.0152 2.3913 -4.4491 21 1 12.6718 2.1309 -5.0160 22 6 4.2752 -0.0070 -0.0003 23 6 3.5805 -1.2008 -0.0056 24 6 2.1976 -1.1975 -0.0056 25 7 1.4558 -2.4782 -0.0111 26 8 2.0572 -3.5299 -0.1356 27 8 0.2436 -2.4803 0.1091 28 1 -0.3634 -0.1290 1.0195 29 1 -0.3633 -0.8185 -0.6216 30 1 -0.3634 0.9475 -0.3981 31 1 1.6572 2.1322 -0.0004 32 1 6.0275 1.7589 0.8974 33 1 6.0276 1.7666 -0.8825 34 1 7.7251 5.7475 -0.8651 35 1 7.7245 5.7398 0.9149 36 1 9.9822 6.2499 0.1168 37 1 9.9799 4.6334 0.8618 38 1 11.9212 5.6238 -1.2373 39 1 11.9196 4.0075 -0.4921 40 1 15.1041 4.1351 -2.3379 41 1 5.3552 -0.0102 -0.0006 42 1 4.1178 -2.1377 -0.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815243033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:38 Heat of formation + Delta-G solvation = -161.910626 kcal Electronic energy + Delta-G solvation = -27538.459105 eV Core-core repulsion = 23066.402502 eV Total energy + Delta-G solvation = -4472.056603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.29732 -42.00209 -41.23808 -39.20667 -38.66648 -37.72735 -37.46932 -34.95055 -33.91365 -32.75007 -31.89125 -30.22693 -29.03026 -28.48305 -26.76562 -24.62650 -24.16437 -23.82849 -23.06742 -22.08239 -20.08733 -19.73982 -19.63413 -18.71084 -18.64296 -18.50185 -18.27609 -17.98859 -17.48882 -16.82752 -16.76819 -16.32315 -16.18097 -15.85123 -15.33610 -14.98864 -14.88977 -14.61886 -14.41142 -14.28688 -13.96164 -13.73453 -13.62891 -13.37955 -13.22654 -12.93060 -12.71627 -12.52058 -12.49392 -12.48252 -12.38157 -12.23789 -12.01996 -11.81373 -11.72855 -11.63952 -11.28517 -10.89969 -10.29109 -10.27468 -9.97314 -8.32622 -6.44469 -1.19390 -0.17242 0.26395 0.41827 0.83263 0.95155 1.41159 1.42897 1.54890 2.13016 2.19031 2.33881 3.01689 3.04211 3.19382 3.31262 3.38577 3.49263 3.78876 3.87259 3.90902 3.92250 3.98928 4.09423 4.26494 4.39329 4.48112 4.50451 4.61039 4.64395 4.66652 4.77475 4.86050 4.88314 5.03409 5.06592 5.17641 5.26223 5.43909 5.54132 5.80161 5.94938 6.47705 6.53106 6.54939 6.79179 7.27137 8.79232 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013932 B = 0.001790 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.278519 B =15638.860717 C =17210.596304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.024 3.976 3 C -0.157 4.157 4 C 0.190 3.810 5 O -0.298 6.298 6 C 0.062 3.938 7 C 0.464 3.536 8 O -0.525 6.525 9 O -0.348 6.348 10 C 0.080 3.920 11 C 0.052 3.948 12 O -0.408 6.408 13 C 0.207 3.793 14 C -0.548 4.548 15 H 0.061 0.939 16 C 0.007 3.993 17 N -0.928 5.928 18 Si 0.980 3.020 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.264 1.264 22 C -0.207 4.207 23 C -0.007 4.007 24 C -0.108 4.108 25 N 0.040 4.960 26 O -0.206 6.206 27 O -0.168 6.168 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.170 0.830 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.060 0.940 38 H -0.009 1.009 39 H -0.008 1.008 40 H 0.271 0.729 41 H 0.184 0.816 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.189 -7.128 7.813 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.023 3.977 3 C -0.176 4.176 4 C 0.143 3.857 5 O -0.210 6.210 6 C -0.013 4.013 7 C 0.307 3.693 8 O -0.414 6.414 9 O -0.265 6.265 10 C 0.007 3.993 11 C -0.025 4.025 12 O -0.329 6.329 13 C 0.133 3.867 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.804 3.196 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.188 1.188 22 C -0.226 4.226 23 C -0.026 4.026 24 C -0.192 4.192 25 N 0.550 4.450 26 O -0.412 6.412 27 O -0.383 6.383 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.187 0.813 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.080 0.920 41 H 0.201 0.799 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -23.993 -6.103 7.700 25.927 hybrid contribution 0.712 -0.337 -0.375 0.872 sum -23.281 -6.440 7.325 25.241 Atomic orbital electron populations 1.21388 0.87021 1.05498 1.05101 1.19789 0.98816 0.89086 0.90035 1.20507 0.90829 0.98791 1.07438 1.19424 0.92044 0.84522 0.89737 1.86104 1.19470 1.28305 1.87107 1.22350 0.78246 0.91411 1.09310 1.23389 0.81085 0.92351 0.72447 1.90702 1.61077 1.43835 1.45742 1.86528 1.22980 1.33653 1.83290 1.23268 0.92582 0.79275 1.04133 1.22667 0.92006 0.99314 0.88479 1.87851 1.23999 1.83260 1.37756 1.19872 0.76048 0.94470 0.96348 1.21375 0.92590 1.41806 1.02831 0.92063 1.25918 0.95704 0.95692 1.01846 1.70052 1.01072 1.47832 1.37797 0.85218 0.77825 0.78631 0.77970 1.19504 1.20008 1.18838 1.21602 1.03040 0.89487 1.08514 1.21034 0.90301 1.01198 0.90051 1.21075 0.93096 0.82609 1.22444 1.43740 1.01052 1.03196 0.96964 1.94537 1.70243 1.21007 1.55389 1.94447 0.96848 1.93971 1.53026 0.88378 0.89174 0.88435 0.81253 0.83162 0.84091 0.90819 0.86993 0.90010 0.92148 0.99089 0.99016 0.92047 0.79881 0.81322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.67 71.23 0.62 -0.78 16 2 C 0.02 0.33 5.88 -19.88 -0.12 0.21 16 3 C -0.16 -1.89 9.61 22.37 0.22 -1.67 16 4 C 0.19 2.39 6.69 22.51 0.15 2.54 16 5 O -0.30 -4.70 9.67 -73.41 -0.71 -5.41 16 6 C 0.06 0.79 5.33 71.24 0.38 1.17 16 7 C 0.46 10.56 8.03 71.24 0.57 11.13 16 8 O -0.52 -15.21 16.25 28.41 0.46 -14.74 16 9 O -0.35 -9.23 10.19 -48.75 -0.50 -9.72 16 10 C 0.08 2.14 5.84 71.98 0.42 2.56 16 11 C 0.05 1.68 6.33 71.98 0.46 2.14 16 12 O -0.41 -18.58 10.30 -145.57 -1.50 -20.08 16 13 C 0.21 11.02 5.69 71.23 0.41 11.43 16 14 C -0.55 -31.43 9.43 25.60 0.24 -31.18 16 15 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 16 C 0.01 0.40 5.46 84.65 0.46 0.86 16 17 N -0.93 -53.90 13.29 21.45 0.28 -53.61 16 18 Si 0.98 42.89 29.54 68.60 2.03 44.91 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 22 C -0.21 -1.99 9.04 22.36 0.20 -1.79 16 23 C -0.01 -0.08 9.55 22.25 0.21 0.13 16 24 C -0.11 -1.76 6.83 36.39 0.25 -1.51 16 25 N 0.04 0.86 4.45 -46.44 -0.21 0.65 16 26 O -0.21 -4.92 18.46 18.90 0.35 -4.57 16 27 O -0.17 -3.64 15.35 18.88 0.29 -3.35 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.17 5.87 -2.38 -0.01 1.16 16 30 H 0.10 0.60 8.03 -2.38 -0.02 0.58 16 31 H 0.17 1.54 8.05 -2.91 -0.02 1.52 16 32 H 0.15 0.88 7.66 -2.39 -0.02 0.86 16 33 H 0.14 1.19 7.66 -2.38 -0.02 1.18 16 34 H 0.07 2.06 8.13 -2.39 -0.02 2.05 16 35 H 0.11 2.30 8.13 -2.39 -0.02 2.28 16 36 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.18 0.68 6.30 -2.91 -0.02 0.66 16 42 H 0.17 1.69 7.62 -2.91 -0.02 1.66 16 Total: -1.00 -75.29 375.51 6.02 -69.27 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: 1.06 Total: 1.41 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 4.47 Total: -4.76 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.08 Total: -52.96 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -1.61 Total: -57.87 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -75.29 6.02 -69.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815243033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.641 kcal (2) G-P(sol) polarization free energy of solvation -75.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds