Wall clock time and date at job start Tue Mar 31 2020 22:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50707 * 119.99729 * 2 1 4 4 C 1.52995 * 109.46931 * 124.99990 * 3 2 1 5 5 F 1.39905 * 109.47450 * 60.00067 * 4 3 2 6 6 F 1.39901 * 109.47143 * 299.99837 * 4 3 2 7 7 C 1.50701 * 109.47372 * 179.97438 * 4 3 2 8 8 O 1.20832 * 119.99303 * 335.00076 * 7 4 3 9 9 O 1.34228 * 120.00519 * 154.99684 * 7 4 3 10 10 C 1.45197 * 117.00283 * 180.02562 * 9 7 4 11 11 C 1.50701 * 109.47181 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00134 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99732 * 180.02562 * 11 10 9 14 14 C 1.39236 * 119.99753 * 184.29399 * 13 11 10 15 15 C 1.39480 * 119.83106 * 324.70394 * 14 13 11 16 16 C 1.36375 * 120.16649 * 180.30100 * 15 14 13 17 17 C 1.40868 * 119.82898 * 359.48341 * 16 15 14 18 18 C 1.41155 * 120.16304 * 180.25634 * 17 16 15 19 19 H 1.08007 * 119.99709 * 215.01619 * 18 17 16 20 20 C 1.39906 * 120.00720 * 35.00344 * 18 17 16 21 21 N 1.30873 * 119.99293 * 355.55656 * 20 18 17 22 22 Si 1.86797 * 120.00240 * 175.54751 * 20 18 17 23 23 H 1.48494 * 109.47220 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46828 * 120.00790 * 22 20 18 25 25 H 1.48499 * 109.47027 * 240.00626 * 22 20 18 26 26 C 1.40869 * 119.67371 * 0.51350 * 17 16 15 27 27 C 1.36379 * 119.82277 * 359.73907 * 26 17 16 28 28 H 1.08007 * 120.00253 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.00614 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00180 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47162 * 4.99881 * 3 2 1 32 32 H 1.09002 * 109.46724 * 244.99891 * 3 2 1 33 33 H 1.08997 * 109.46792 * 59.99780 * 10 9 7 34 34 H 1.09001 * 109.47111 * 300.00875 * 10 9 7 35 35 H 0.97003 * 120.00222 * 4.28302 * 13 11 10 36 36 H 1.08000 * 119.91840 * 0.02701 * 15 14 13 37 37 H 1.08003 * 120.08232 * 179.70255 * 16 15 14 38 38 H 0.97006 * 119.99623 * 179.97438 * 21 20 18 39 39 H 1.07995 * 120.08862 * 179.71587 * 26 17 16 40 40 H 1.08000 * 119.90940 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 9 3.9397 0.2724 1.0667 6 9 2.3189 1.2080 2.3770 7 6 3.7888 2.6380 1.1813 8 8 3.9337 3.2517 0.1506 9 8 4.2993 3.1185 2.3260 10 6 5.0128 4.3809 2.2509 11 6 5.5109 4.7587 3.6221 12 8 5.2870 4.0351 4.5693 13 7 6.2051 5.9008 3.7958 14 6 6.7420 6.2061 5.0437 15 6 6.0518 5.8496 6.2021 16 6 6.5684 6.1507 7.4278 17 6 7.8076 6.8139 7.5221 18 6 8.3515 7.1242 8.7872 19 1 8.9146 8.0356 8.9241 20 6 8.1608 6.2514 9.8639 21 7 7.4062 5.1918 9.7214 22 14 8.9836 6.5985 11.5046 23 1 9.7775 7.8495 11.4054 24 1 7.9461 6.7531 12.5557 25 1 9.8810 5.4690 11.8571 26 6 8.4988 7.1708 6.3477 27 6 7.9670 6.8675 5.1290 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 4.3416 5.1561 1.8813 34 1 5.8597 4.2798 1.5721 35 1 6.3309 6.5100 3.0515 36 1 5.1037 5.3376 6.1282 37 1 6.0305 5.8782 8.3238 38 1 7.2743 4.5864 10.4678 39 1 9.4471 7.6835 6.4122 40 1 8.4960 7.1401 4.2277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815310603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:11 Heat of formation + Delta-G solvation = -164.320855 kcal Electronic energy + Delta-G solvation = -27930.410823 eV Core-core repulsion = 23347.162189 eV Total energy + Delta-G solvation = -4583.248634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.62025 -47.60622 -41.07779 -39.66337 -37.57268 -36.89309 -35.57786 -34.53268 -33.00785 -30.85708 -29.91293 -29.46568 -28.35494 -25.76974 -24.65309 -21.87447 -21.48781 -21.05535 -20.59967 -19.82297 -18.96880 -18.33177 -17.98126 -17.33222 -17.14514 -16.85495 -16.69565 -16.07907 -15.39205 -15.23212 -14.92553 -14.72189 -14.41289 -13.99108 -13.96361 -13.86034 -13.67424 -13.43877 -13.03959 -12.94782 -12.80273 -12.68620 -12.30339 -12.13517 -11.79480 -11.72676 -11.52859 -11.26048 -11.15181 -11.12963 -10.93561 -10.55440 -10.00949 -9.95689 -9.91541 -9.57500 -9.08192 -8.83606 -7.57687 -6.96274 -6.62774 -4.37260 1.22702 1.39161 1.81088 2.43284 2.91084 3.03576 3.07865 3.09571 3.14451 3.25333 3.31405 3.65464 3.89229 3.96791 4.07275 4.39936 4.62077 4.63961 4.68521 4.81568 4.86946 4.97186 5.12487 5.38072 5.60491 5.64344 6.06493 6.07556 6.14157 6.32964 6.66993 6.82791 6.92543 7.00005 7.15183 7.23756 7.57199 7.60520 7.88471 8.05503 8.07798 8.28102 8.56285 8.64495 8.89783 8.95805 10.28122 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002016 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.555427 B =13887.250047 C =14753.953569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.168 4.168 3 C -0.122 4.122 4 C 0.326 3.674 5 F -0.170 7.170 6 F -0.168 7.168 7 C 0.433 3.567 8 O -0.469 6.469 9 O -0.307 6.307 10 C 0.048 3.952 11 C 0.497 3.503 12 O -0.500 6.500 13 N -0.645 5.645 14 C -0.001 4.001 15 C -0.092 4.092 16 C -0.145 4.145 17 C 0.101 3.899 18 C -0.461 4.461 19 H 0.077 0.923 20 C 0.068 3.932 21 N -0.805 5.805 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.204 4.204 27 C -0.109 4.109 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.397 0.603 36 H 0.108 0.892 37 H 0.131 0.869 38 H 0.279 0.721 39 H 0.098 0.902 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.436 -5.932 -19.009 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 C -0.159 4.159 4 C 0.288 3.712 5 F -0.151 7.151 6 F -0.148 7.148 7 C 0.271 3.729 8 O -0.355 6.355 9 O -0.220 6.220 10 C -0.029 4.029 11 C 0.281 3.719 12 O -0.374 6.374 13 N -0.290 5.290 14 C -0.092 4.092 15 C -0.112 4.112 16 C -0.165 4.165 17 C 0.099 3.901 18 C -0.492 4.492 19 H 0.095 0.905 20 C -0.148 4.148 21 N -0.431 5.431 22 Si 0.741 3.259 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.224 4.224 27 C -0.129 4.129 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.231 0.769 36 H 0.126 0.874 37 H 0.149 0.851 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.612 -6.497 -18.449 22.253 hybrid contribution 0.690 0.264 0.327 0.808 sum -9.922 -6.232 -18.122 21.580 Atomic orbital electron populations 1.23978 0.95534 1.02661 0.97831 1.22650 0.96289 0.97075 1.02628 1.21722 0.98074 0.99603 0.96526 1.20617 0.83758 0.81126 0.85671 1.93131 1.68530 1.57191 1.96207 1.93163 1.78005 1.95954 1.47704 1.24054 0.78317 0.87663 0.82821 1.90742 1.54238 1.57645 1.32887 1.86651 1.63685 1.37921 1.33790 1.22952 0.97861 0.84014 0.98085 1.19815 0.80740 0.82119 0.89222 1.90795 1.54733 1.50636 1.41202 1.42735 1.53596 1.20291 1.12342 1.17220 0.96869 1.12248 0.82911 1.20649 0.99177 0.99572 0.91767 1.21310 0.96142 1.02887 0.96121 1.17760 0.90241 0.89714 0.92406 1.19537 1.29937 1.06288 0.93406 0.90493 1.25922 0.94083 0.94316 1.00454 1.69797 1.30283 1.10534 1.32531 0.86136 0.79529 0.79367 0.80875 1.18589 1.19950 1.19962 1.20693 1.00154 1.09486 0.92060 1.20065 0.93527 1.02292 0.97044 0.87493 0.88067 0.86022 0.87449 0.86254 0.87729 0.87648 0.76910 0.87415 0.85106 0.91014 0.88400 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 14.32 29.02 0.42 -0.50 16 2 C -0.17 -1.13 9.00 -36.02 -0.32 -1.45 16 3 C -0.12 -0.88 4.79 -27.88 -0.13 -1.02 16 4 C 0.33 3.44 2.04 -27.89 -0.06 3.38 16 5 F -0.17 -1.91 16.74 2.25 0.04 -1.87 16 6 F -0.17 -2.06 16.62 2.25 0.04 -2.02 16 7 C 0.43 5.19 7.34 36.01 0.26 5.46 16 8 O -0.47 -5.59 15.84 -18.75 -0.30 -5.88 16 9 O -0.31 -4.41 9.59 -45.90 -0.44 -4.85 16 10 C 0.05 0.59 5.95 36.01 0.21 0.81 16 11 C 0.50 8.53 7.74 -10.99 -0.09 8.45 16 12 O -0.50 -11.20 13.92 -14.10 -0.20 -11.40 16 13 N -0.64 -10.66 5.30 -9.74 -0.05 -10.71 16 14 C 0.00 -0.02 6.31 -83.57 -0.53 -0.54 16 15 C -0.09 -2.26 8.61 -39.79 -0.34 -2.60 16 16 C -0.14 -3.85 8.61 -39.26 -0.34 -4.19 16 17 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 18 C -0.46 -12.18 9.02 -37.85 -0.34 -12.52 16 19 H 0.08 1.94 7.85 -52.48 -0.41 1.52 16 20 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 21 N -0.80 -21.41 10.61 55.55 0.59 -20.82 16 22 Si 0.92 19.01 29.56 -169.99 -5.03 13.99 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.20 -4.83 9.74 -39.26 -0.38 -5.21 16 27 C -0.11 -2.31 9.90 -39.79 -0.39 -2.70 16 28 H 0.11 0.47 8.06 -52.48 -0.42 0.05 16 29 H 0.10 0.49 7.84 -52.49 -0.41 0.07 16 30 H 0.12 0.77 8.04 -52.49 -0.42 0.35 16 31 H 0.11 0.65 7.79 -51.93 -0.40 0.24 16 32 H 0.12 0.75 7.87 -51.93 -0.41 0.34 16 33 H 0.10 0.99 8.13 -51.93 -0.42 0.56 16 34 H 0.11 1.05 8.13 -51.93 -0.42 0.63 16 35 H 0.40 4.74 8.82 -40.82 -0.36 4.38 16 36 H 0.11 2.67 6.22 -52.49 -0.33 2.35 16 37 H 0.13 3.65 6.15 -52.48 -0.32 3.33 16 38 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -32.27 363.16 -6.91 -39.17 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.32 Total: 7.85 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.72 Total: -8.92 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.54 Total: -31.53 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.93 Total: -22.14 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.27 -6.91 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815310603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.149 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds