Wall clock time and date at job start Tue Mar 31 2020 22:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50707 * 119.99729 * 2 1 4 4 C 1.52995 * 109.46931 * 124.99990 * 3 2 1 5 5 F 1.39905 * 109.47450 * 60.00067 * 4 3 2 6 6 F 1.39901 * 109.47143 * 299.99837 * 4 3 2 7 7 C 1.50701 * 109.47372 * 179.97438 * 4 3 2 8 8 O 1.20832 * 119.99303 * 335.00076 * 7 4 3 9 9 O 1.34228 * 120.00519 * 154.99684 * 7 4 3 10 10 C 1.45197 * 117.00283 * 180.02562 * 9 7 4 11 11 C 1.50701 * 109.47181 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00134 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99732 * 180.02562 * 11 10 9 14 14 C 1.39236 * 119.99753 * 184.29399 * 13 11 10 15 15 C 1.39480 * 119.83106 * 324.70394 * 14 13 11 16 16 C 1.36375 * 120.16649 * 180.30100 * 15 14 13 17 17 C 1.40868 * 119.82898 * 359.48341 * 16 15 14 18 18 C 1.41155 * 120.16304 * 180.25634 * 17 16 15 19 19 H 1.08007 * 119.99709 * 215.01619 * 18 17 16 20 20 C 1.39906 * 120.00720 * 35.00344 * 18 17 16 21 21 N 1.30873 * 119.99293 * 355.55656 * 20 18 17 22 22 Si 1.86797 * 120.00240 * 175.54751 * 20 18 17 23 23 H 1.48494 * 109.47220 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46828 * 120.00790 * 22 20 18 25 25 H 1.48499 * 109.47027 * 240.00626 * 22 20 18 26 26 C 1.40869 * 119.67371 * 0.51350 * 17 16 15 27 27 C 1.36379 * 119.82277 * 359.73907 * 26 17 16 28 28 H 1.08007 * 120.00253 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.00614 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00180 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47162 * 4.99881 * 3 2 1 32 32 H 1.09002 * 109.46724 * 244.99891 * 3 2 1 33 33 H 1.08997 * 109.46792 * 59.99780 * 10 9 7 34 34 H 1.09001 * 109.47111 * 300.00875 * 10 9 7 35 35 H 0.97003 * 120.00222 * 4.28302 * 13 11 10 36 36 H 1.08000 * 119.91840 * 0.02701 * 15 14 13 37 37 H 1.08003 * 120.08232 * 179.70255 * 16 15 14 38 38 H 0.97006 * 119.99623 * 179.97438 * 21 20 18 39 39 H 1.07995 * 120.08862 * 179.71587 * 26 17 16 40 40 H 1.08000 * 119.90940 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 9 3.9397 0.2724 1.0667 6 9 2.3189 1.2080 2.3770 7 6 3.7888 2.6380 1.1813 8 8 3.9337 3.2517 0.1506 9 8 4.2993 3.1185 2.3260 10 6 5.0128 4.3809 2.2509 11 6 5.5109 4.7587 3.6221 12 8 5.2870 4.0351 4.5693 13 7 6.2051 5.9008 3.7958 14 6 6.7420 6.2061 5.0437 15 6 6.0518 5.8496 6.2021 16 6 6.5684 6.1507 7.4278 17 6 7.8076 6.8139 7.5221 18 6 8.3515 7.1242 8.7872 19 1 8.9146 8.0356 8.9241 20 6 8.1608 6.2514 9.8639 21 7 7.4062 5.1918 9.7214 22 14 8.9836 6.5985 11.5046 23 1 9.7775 7.8495 11.4054 24 1 7.9461 6.7531 12.5557 25 1 9.8810 5.4690 11.8571 26 6 8.4988 7.1708 6.3477 27 6 7.9670 6.8675 5.1290 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 4.3416 5.1561 1.8813 34 1 5.8597 4.2798 1.5721 35 1 6.3309 6.5100 3.0515 36 1 5.1037 5.3376 6.1282 37 1 6.0305 5.8782 8.3238 38 1 7.2743 4.5864 10.4678 39 1 9.4471 7.6835 6.4122 40 1 8.4960 7.1401 4.2277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815310603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:10 Heat of formation + Delta-G solvation = -182.533093 kcal Electronic energy + Delta-G solvation = -27931.200565 eV Core-core repulsion = 23347.162189 eV Total energy + Delta-G solvation = -4584.038376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.47719 -48.48281 -42.09370 -41.12662 -39.15688 -38.07248 -36.23797 -36.11093 -34.78010 -31.84182 -31.41650 -31.10135 -29.73555 -26.94239 -26.05068 -23.41571 -22.95344 -22.41176 -21.38209 -21.15677 -19.84566 -19.31857 -19.21733 -18.98744 -18.31030 -17.88161 -17.68772 -17.49002 -17.02420 -16.20985 -15.98284 -15.90933 -15.74634 -15.23778 -15.00961 -14.92144 -14.76891 -14.50076 -14.41013 -14.19801 -13.97872 -13.86447 -13.65417 -13.62018 -13.35772 -12.94098 -12.88955 -12.66876 -12.34097 -12.24436 -12.15881 -11.95347 -11.81331 -11.68023 -11.27502 -10.85865 -10.56182 -10.42906 -9.47164 -8.79491 -8.51207 -6.34766 0.31526 0.54096 0.75741 1.12005 1.26743 1.38664 1.38750 1.54444 1.63585 2.00962 2.23062 2.52212 2.73635 2.80319 3.14799 3.25591 3.49474 3.67935 3.83997 3.90668 3.94773 4.11535 4.42911 4.45911 4.46742 4.62941 4.70961 4.95984 4.98097 5.10232 5.13190 5.31947 5.38239 5.62842 5.68726 5.69489 5.81650 5.94271 6.04233 6.12976 6.33338 6.57700 6.69659 6.94592 6.99725 7.25477 8.41827 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002016 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.555427 B =13887.250047 C =14753.953569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.188 4.188 3 C -0.114 4.114 4 C 0.321 3.679 5 F -0.177 7.177 6 F -0.181 7.181 7 C 0.437 3.563 8 O -0.465 6.465 9 O -0.337 6.337 10 C 0.056 3.944 11 C 0.496 3.504 12 O -0.559 6.559 13 N -0.631 5.631 14 C 0.016 3.984 15 C -0.108 4.108 16 C -0.170 4.170 17 C 0.066 3.934 18 C -0.494 4.494 19 H 0.081 0.919 20 C 0.020 3.980 21 N -0.846 5.846 22 Si 0.992 3.008 23 H -0.253 1.253 24 H -0.268 1.268 25 H -0.270 1.270 26 C -0.209 4.209 27 C -0.102 4.102 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.425 0.575 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.282 0.718 39 H 0.115 0.885 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 -5.150 -21.704 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.205 4.205 3 C -0.152 4.152 4 C 0.284 3.716 5 F -0.158 7.158 6 F -0.162 7.162 7 C 0.275 3.725 8 O -0.351 6.351 9 O -0.252 6.252 10 C -0.020 4.020 11 C 0.283 3.717 12 O -0.437 6.437 13 N -0.279 5.279 14 C -0.077 4.077 15 C -0.128 4.128 16 C -0.190 4.190 17 C 0.063 3.937 18 C -0.525 4.525 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.474 5.474 22 Si 0.812 3.188 23 H -0.176 1.176 24 H -0.193 1.193 25 H -0.195 1.195 26 C -0.229 4.229 27 C -0.121 4.121 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.264 0.736 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.258 -5.678 -21.222 24.245 hybrid contribution 0.489 -0.007 0.962 1.079 sum -9.769 -5.685 -20.260 23.199 Atomic orbital electron populations 1.24205 0.95283 1.03726 0.95997 1.22688 0.96751 0.96847 1.04262 1.21791 0.97660 1.00464 0.95235 1.21047 0.84010 0.80280 0.86296 1.93113 1.68946 1.57469 1.96235 1.93131 1.78257 1.95968 1.48873 1.24228 0.78088 0.87951 0.82203 1.90734 1.54176 1.57686 1.32512 1.86633 1.64336 1.38860 1.35351 1.23005 0.99798 0.84584 0.94632 1.20687 0.79194 0.81171 0.90648 1.90788 1.56720 1.52441 1.43748 1.42572 1.52905 1.21024 1.11364 1.17275 0.96486 1.09925 0.84009 1.20673 0.99301 1.00217 0.92632 1.21169 0.96964 1.04836 0.96072 1.18105 0.90618 0.90968 0.93960 1.19815 1.31180 1.07081 0.94389 0.90075 1.26881 0.94350 0.93726 1.04149 1.69922 1.31963 1.11752 1.33794 0.85011 0.78456 0.79423 0.75861 1.17580 1.19321 1.19534 1.20975 1.00676 1.09071 0.92143 1.20458 0.93038 1.00621 0.98015 0.86383 0.87123 0.86174 0.86095 0.85168 0.84018 0.84396 0.73614 0.88591 0.87857 0.90744 0.86723 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 14.32 67.79 0.97 -0.49 16 2 C -0.19 -2.24 9.00 25.66 0.23 -2.01 16 3 C -0.11 -1.45 4.79 29.85 0.14 -1.31 16 4 C 0.32 6.43 2.04 29.85 0.06 6.49 16 5 F -0.18 -3.87 16.74 44.97 0.75 -3.12 16 6 F -0.18 -4.41 16.62 44.97 0.75 -3.66 16 7 C 0.44 9.65 7.34 71.24 0.52 10.17 16 8 O -0.47 -9.70 15.84 21.95 0.35 -9.35 16 9 O -0.34 -9.18 9.59 -45.04 -0.43 -9.62 16 10 C 0.06 1.20 5.95 71.24 0.42 1.63 16 11 C 0.50 16.24 7.74 87.66 0.68 16.92 16 12 O -0.56 -25.45 13.92 15.79 0.22 -25.23 16 13 N -0.63 -19.18 5.30 -303.13 -1.61 -20.78 16 14 C 0.02 0.68 6.31 38.56 0.24 0.92 16 15 C -0.11 -5.50 8.61 22.13 0.19 -5.31 16 16 C -0.17 -9.56 8.61 22.48 0.19 -9.37 16 17 C 0.07 3.60 5.55 -21.28 -0.12 3.48 16 18 C -0.49 -26.96 9.02 23.39 0.21 -26.75 16 19 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 20 C 0.02 1.07 5.42 85.24 0.46 1.53 16 21 N -0.85 -47.43 10.61 21.82 0.23 -47.20 16 22 Si 0.99 39.85 29.56 68.60 2.03 41.88 16 23 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 25 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 26 C -0.21 -9.73 9.74 22.48 0.22 -9.51 16 27 C -0.10 -4.04 9.90 22.13 0.22 -3.82 16 28 H 0.12 0.82 8.06 -2.91 -0.02 0.80 16 29 H 0.11 0.81 7.84 -2.91 -0.02 0.79 16 30 H 0.12 1.43 8.04 -2.91 -0.02 1.40 16 31 H 0.12 1.18 7.79 -2.39 -0.02 1.16 16 32 H 0.13 1.34 7.87 -2.39 -0.02 1.32 16 33 H 0.14 2.04 8.13 -2.39 -0.02 2.02 16 34 H 0.14 2.13 8.13 -2.39 -0.02 2.11 16 35 H 0.43 8.25 8.82 -92.71 -0.82 7.43 16 36 H 0.10 5.03 6.22 -2.91 -0.02 5.01 16 37 H 0.10 6.26 6.15 -2.91 -0.02 6.24 16 38 H 0.28 14.49 8.30 -92.70 -0.77 13.72 16 39 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 40 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -75.02 363.16 7.22 -67.80 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.28 Total: 26.71 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.65 Total: -17.44 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -1.38 Total: -67.98 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: 0.14 Total: -44.20 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 1.50 Total: -6.78 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -75.02 7.22 -67.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815310603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.729 kcal (2) G-P(sol) polarization free energy of solvation -75.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds