Wall clock time and date at job start Tue Mar 31 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 115.55129 * 2 1 4 4 O 1.20820 * 119.99862 * 214.33019 * 3 2 1 5 5 O 1.34229 * 119.99886 * 34.33152 * 3 2 1 6 6 C 1.45196 * 117.00137 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47242 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99894 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00294 * 180.02562 * 7 6 5 10 10 C 1.37139 * 119.99819 * 354.95455 * 9 7 6 11 11 H 1.08002 * 120.00015 * 344.73983 * 10 9 7 12 12 C 1.38890 * 120.00185 * 164.74069 * 10 9 7 13 13 N 1.31423 * 119.99842 * 343.62252 * 12 10 9 14 14 Si 1.86793 * 120.00253 * 163.62484 * 12 10 9 15 15 H 1.48500 * 109.47257 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47045 * 119.99796 * 14 12 10 17 17 H 1.48499 * 109.47400 * 239.99884 * 14 12 10 18 18 C 1.39795 * 120.00333 * 174.95614 * 9 7 6 19 19 C 1.38953 * 120.07728 * 101.20561 * 18 9 7 20 20 C 1.38084 * 119.92298 * 179.74902 * 19 18 9 21 21 C 1.38311 * 120.07364 * 0.55356 * 20 19 18 22 22 C 1.38303 * 120.15535 * 359.69807 * 21 20 19 23 23 C 1.38084 * 120.07794 * 0.02604 * 22 21 20 24 24 C 1.53000 * 117.52026 * 145.70572 * 2 1 3 25 25 C 1.52999 * 60.00250 * 107.47850 * 24 2 1 26 26 F 1.39898 * 117.49989 * 252.50915 * 25 24 2 27 27 F 1.39902 * 117.51541 * 107.48135 * 25 24 2 28 28 H 1.08996 * 109.47714 * 85.58467 * 1 2 3 29 29 H 1.09008 * 109.47060 * 205.58126 * 1 2 3 30 30 H 1.08996 * 109.47319 * 325.57667 * 1 2 3 31 31 H 1.09006 * 109.46942 * 60.00323 * 6 5 3 32 32 H 1.08993 * 109.47174 * 299.99917 * 6 5 3 33 33 H 0.96996 * 120.00144 * 185.01779 * 13 12 10 34 34 H 1.08005 * 120.04363 * 0.02562 * 19 18 9 35 35 H 1.07995 * 119.96082 * 180.25437 * 20 19 18 36 36 H 1.07998 * 119.91895 * 179.72360 * 21 20 19 37 37 H 1.08004 * 119.96496 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.03550 * 180.02562 * 23 22 21 39 39 H 1.09001 * 117.49824 * 214.97501 * 24 2 1 40 40 H 1.09002 * 117.49862 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2201 1.5319 -0.5901 5 8 1.6033 2.3792 0.6556 6 6 2.2856 3.6601 0.6133 7 6 1.4962 4.6760 1.3981 8 8 0.4607 4.3521 1.9401 9 7 1.9407 5.9444 1.4976 10 6 3.1610 6.2864 0.9735 11 1 3.8689 5.5158 0.7058 12 6 3.4867 7.6236 0.7870 13 7 2.5426 8.5378 0.8002 14 14 5.2664 8.1227 0.5174 15 1 6.1291 6.9143 0.5458 16 1 5.3981 8.7935 -0.8010 17 1 5.6868 9.0570 1.5924 18 6 1.1580 6.9115 2.1350 19 6 1.4476 7.2927 3.4395 20 6 0.6756 8.2520 4.0643 21 6 -0.3919 8.8250 3.3972 22 6 -0.6862 8.4442 2.1006 23 6 0.0851 7.4896 1.4677 24 6 2.2369 -1.1210 0.7645 25 6 2.2364 -1.1207 -0.7655 26 9 1.4339 -2.0673 -1.4113 27 9 3.4361 -0.8047 -1.4121 28 1 -0.3634 0.0791 -1.0245 29 1 -0.3633 -0.9270 0.4438 30 1 -0.3634 0.8477 0.5809 31 1 2.3745 3.9904 -0.4217 32 1 3.2796 3.5569 1.0484 33 1 2.7591 9.4614 0.5979 34 1 2.2783 6.8424 3.9627 35 1 0.9026 8.5517 5.0767 36 1 -0.9968 9.5718 3.8898 37 1 -1.5208 8.8934 1.5827 38 1 -0.1451 7.1930 0.4550 39 1 3.1721 -0.8750 1.2676 40 1 1.6120 -1.8586 1.2681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817251938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:44 Heat of formation + Delta-G solvation = -136.344272 kcal Electronic energy + Delta-G solvation = -29257.668200 eV Core-core repulsion = 24675.632722 eV Total energy + Delta-G solvation = -4582.035478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.89089 -47.52451 -40.57749 -39.41197 -37.60024 -36.87559 -35.95771 -34.82834 -31.82122 -29.95005 -29.85348 -29.00082 -27.55444 -25.09668 -24.16901 -22.91819 -21.72062 -21.57541 -20.15845 -19.46114 -18.25037 -18.05539 -17.22105 -16.86158 -16.38400 -16.32107 -15.96230 -15.54961 -15.18347 -14.86182 -14.60528 -14.36913 -14.18207 -13.90306 -13.78436 -13.70543 -13.45834 -13.21680 -13.09542 -12.74571 -12.53643 -12.50386 -12.21692 -12.13528 -11.67286 -11.57055 -11.24559 -11.13005 -11.02558 -10.59985 -10.50026 -10.47669 -10.39194 -10.30683 -10.15993 -9.54564 -8.76373 -8.27118 -7.93173 -7.66042 -6.37954 -4.17787 1.87291 2.26467 2.41766 2.45360 2.70829 2.95758 3.00234 3.13595 3.16332 3.52413 3.76709 3.88404 4.10011 4.27563 4.34528 4.76464 4.79105 4.94674 5.06317 5.11283 5.36515 5.44682 5.51663 5.59380 5.68738 5.74665 5.80800 5.85815 5.96260 5.99547 6.34907 6.50169 6.52285 6.72398 6.97835 7.17640 7.26493 7.39348 7.49538 7.66866 7.75457 7.88044 8.28292 8.83602 9.15429 9.57965 10.46487 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.003149 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.763005 B = 8890.581456 C =10286.413799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.136 4.136 3 C 0.492 3.508 4 O -0.490 6.490 5 O -0.322 6.322 6 C 0.072 3.928 7 C 0.463 3.537 8 O -0.576 6.576 9 N -0.405 5.405 10 C -0.365 4.365 11 H 0.105 0.895 12 C 0.050 3.950 13 N -0.841 5.841 14 Si 0.921 3.079 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.277 1.277 18 C 0.237 3.763 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.143 4.143 22 C -0.121 4.121 23 C -0.066 4.066 24 C -0.142 4.142 25 C 0.230 3.770 26 F -0.151 7.151 27 F -0.139 7.139 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.274 0.726 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 -11.362 0.725 11.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.139 4.139 3 C 0.333 3.667 4 O -0.377 6.377 5 O -0.236 6.236 6 C -0.004 4.004 7 C 0.252 3.748 8 O -0.460 6.460 9 N -0.122 5.122 10 C -0.490 4.490 11 H 0.122 0.878 12 C -0.159 4.159 13 N -0.476 5.476 14 Si 0.747 3.253 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.203 1.203 18 C 0.147 3.853 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.162 4.162 22 C -0.140 4.140 23 C -0.085 4.085 24 C -0.180 4.180 25 C 0.193 3.807 26 F -0.132 7.132 27 F -0.119 7.119 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.149 0.851 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.382 -11.207 0.805 11.485 hybrid contribution 1.368 0.629 -0.643 1.637 sum -1.014 -10.577 0.162 10.627 Atomic orbital electron populations 1.21438 0.87261 1.04852 1.04141 1.22404 0.99077 0.87802 1.04602 1.21878 0.82792 0.85606 0.76470 1.90753 1.22457 1.83799 1.40716 1.86446 1.51604 1.18950 1.66627 1.22726 0.95699 0.79172 1.02795 1.19434 0.86612 0.83346 0.85414 1.90620 1.25390 1.79517 1.50470 1.41186 1.17253 1.05368 1.48441 1.19680 0.90836 0.93350 1.45151 0.87787 1.25276 0.99543 0.95647 0.95467 1.69943 1.31922 1.02922 1.42769 0.85947 0.82026 0.79138 0.78161 1.19050 1.20443 1.20284 1.17033 0.89655 0.88740 0.89843 1.20978 0.99780 0.98750 0.94580 1.20668 0.96498 0.97936 0.99033 1.20759 0.98677 1.01240 0.95488 1.20690 0.99762 0.98421 0.95113 1.20802 0.94426 0.95198 0.98098 1.24553 1.04207 0.97908 0.91329 1.19731 0.80588 0.91309 0.89051 1.93044 1.72341 1.64274 1.83515 1.93137 1.43349 1.92323 1.83059 0.90711 0.90537 0.88599 0.88364 0.88878 0.91476 0.87409 0.87501 0.87666 0.87467 0.87635 0.85120 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.45 37.16 0.35 -0.87 16 2 C -0.14 -1.65 2.64 -155.66 -0.41 -2.07 16 3 C 0.49 7.98 7.50 36.01 0.27 8.25 16 4 O -0.49 -9.05 14.90 -18.75 -0.28 -9.33 16 5 O -0.32 -5.92 9.03 -45.90 -0.41 -6.34 16 6 C 0.07 1.44 4.49 36.01 0.16 1.60 16 7 C 0.46 10.90 7.66 -10.99 -0.08 10.81 16 8 O -0.58 -14.86 16.48 -14.11 -0.23 -15.09 16 9 N -0.40 -9.87 2.66 -58.98 -0.16 -10.03 16 10 C -0.36 -8.78 9.19 -14.94 -0.14 -8.92 16 11 H 0.10 2.35 6.46 -52.49 -0.34 2.01 16 12 C 0.05 1.19 5.24 -17.49 -0.09 1.10 16 13 N -0.84 -20.96 10.34 55.49 0.57 -20.38 16 14 Si 0.92 18.87 29.59 -169.99 -5.03 13.84 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 18 C 0.24 5.73 2.29 -83.70 -0.19 5.54 16 19 C -0.12 -2.73 9.95 -39.37 -0.39 -3.12 16 20 C -0.12 -2.41 10.04 -39.61 -0.40 -2.81 16 21 C -0.14 -2.69 10.04 -39.53 -0.40 -3.09 16 22 C -0.12 -2.42 10.04 -39.61 -0.40 -2.82 16 23 C -0.07 -1.52 8.66 -39.37 -0.34 -1.86 16 24 C -0.14 -1.27 9.85 -26.73 -0.26 -1.53 16 25 C 0.23 2.71 5.13 -26.73 -0.14 2.57 16 26 F -0.15 -1.70 17.14 2.25 0.04 -1.66 16 27 F -0.14 -2.02 15.72 2.25 0.04 -1.98 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.58 7.90 -51.92 -0.41 0.17 16 30 H 0.10 1.12 7.50 -51.93 -0.39 0.73 16 31 H 0.10 1.91 8.13 -51.93 -0.42 1.49 16 32 H 0.09 1.75 7.52 -51.93 -0.39 1.36 16 33 H 0.27 6.56 8.32 -40.82 -0.34 6.22 16 34 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 35 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 38 H 0.11 2.47 8.06 -52.49 -0.42 2.04 16 39 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.14 0.79 8.05 -51.93 -0.42 0.37 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -30.16 359.78 -6.97 -37.12 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.46 Total: 5.64 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.46 Total: 2.79 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.42 Total: -30.41 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.93 Total: -30.76 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.07 Total: -3.64 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.16 -6.97 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817251938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.223 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds