Wall clock time and date at job start Tue Mar 31 2020 22:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 115.55129 * 2 1 4 4 O 1.20820 * 119.99862 * 214.33019 * 3 2 1 5 5 O 1.34229 * 119.99886 * 34.33152 * 3 2 1 6 6 C 1.45196 * 117.00137 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47242 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99894 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00294 * 180.02562 * 7 6 5 10 10 C 1.37139 * 119.99819 * 354.95455 * 9 7 6 11 11 H 1.08002 * 120.00015 * 344.73983 * 10 9 7 12 12 C 1.38890 * 120.00185 * 164.74069 * 10 9 7 13 13 N 1.31423 * 119.99842 * 343.62252 * 12 10 9 14 14 Si 1.86793 * 120.00253 * 163.62484 * 12 10 9 15 15 H 1.48500 * 109.47257 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47045 * 119.99796 * 14 12 10 17 17 H 1.48499 * 109.47400 * 239.99884 * 14 12 10 18 18 C 1.39795 * 120.00333 * 174.95614 * 9 7 6 19 19 C 1.38953 * 120.07728 * 101.20561 * 18 9 7 20 20 C 1.38084 * 119.92298 * 179.74902 * 19 18 9 21 21 C 1.38311 * 120.07364 * 0.55356 * 20 19 18 22 22 C 1.38303 * 120.15535 * 359.69807 * 21 20 19 23 23 C 1.38084 * 120.07794 * 0.02604 * 22 21 20 24 24 C 1.53000 * 117.52026 * 145.70572 * 2 1 3 25 25 C 1.52999 * 60.00250 * 107.47850 * 24 2 1 26 26 F 1.39898 * 117.49989 * 252.50915 * 25 24 2 27 27 F 1.39902 * 117.51541 * 107.48135 * 25 24 2 28 28 H 1.08996 * 109.47714 * 85.58467 * 1 2 3 29 29 H 1.09008 * 109.47060 * 205.58126 * 1 2 3 30 30 H 1.08996 * 109.47319 * 325.57667 * 1 2 3 31 31 H 1.09006 * 109.46942 * 60.00323 * 6 5 3 32 32 H 1.08993 * 109.47174 * 299.99917 * 6 5 3 33 33 H 0.96996 * 120.00144 * 185.01779 * 13 12 10 34 34 H 1.08005 * 120.04363 * 0.02562 * 19 18 9 35 35 H 1.07995 * 119.96082 * 180.25437 * 20 19 18 36 36 H 1.07998 * 119.91895 * 179.72360 * 21 20 19 37 37 H 1.08004 * 119.96496 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.03550 * 180.02562 * 23 22 21 39 39 H 1.09001 * 117.49824 * 214.97501 * 24 2 1 40 40 H 1.09002 * 117.49862 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2201 1.5319 -0.5901 5 8 1.6033 2.3792 0.6556 6 6 2.2856 3.6601 0.6133 7 6 1.4962 4.6760 1.3981 8 8 0.4607 4.3521 1.9401 9 7 1.9407 5.9444 1.4976 10 6 3.1610 6.2864 0.9735 11 1 3.8689 5.5158 0.7058 12 6 3.4867 7.6236 0.7870 13 7 2.5426 8.5378 0.8002 14 14 5.2664 8.1227 0.5174 15 1 6.1291 6.9143 0.5458 16 1 5.3981 8.7935 -0.8010 17 1 5.6868 9.0570 1.5924 18 6 1.1580 6.9115 2.1350 19 6 1.4476 7.2927 3.4395 20 6 0.6756 8.2520 4.0643 21 6 -0.3919 8.8250 3.3972 22 6 -0.6862 8.4442 2.1006 23 6 0.0851 7.4896 1.4677 24 6 2.2369 -1.1210 0.7645 25 6 2.2364 -1.1207 -0.7655 26 9 1.4339 -2.0673 -1.4113 27 9 3.4361 -0.8047 -1.4121 28 1 -0.3634 0.0791 -1.0245 29 1 -0.3633 -0.9270 0.4438 30 1 -0.3634 0.8477 0.5809 31 1 2.3745 3.9904 -0.4217 32 1 3.2796 3.5569 1.0484 33 1 2.7591 9.4614 0.5979 34 1 2.2783 6.8424 3.9627 35 1 0.9026 8.5517 5.0767 36 1 -0.9968 9.5718 3.8898 37 1 -1.5208 8.8934 1.5827 38 1 -0.1451 7.1930 0.4550 39 1 3.1721 -0.8750 1.2676 40 1 1.6120 -1.8586 1.2681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817251938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:43 Heat of formation + Delta-G solvation = -150.535337 kcal Electronic energy + Delta-G solvation = -29258.283571 eV Core-core repulsion = 24675.632722 eV Total energy + Delta-G solvation = -4582.650849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.82281 -48.48545 -41.96060 -41.11552 -39.13963 -38.11568 -37.27802 -36.64075 -33.67526 -31.57813 -31.45169 -29.99080 -29.03855 -26.93564 -25.38202 -23.77490 -23.31937 -23.20490 -21.36510 -21.25575 -19.74501 -19.28935 -18.39696 -18.22818 -17.84718 -17.63393 -17.25770 -17.13270 -16.61618 -16.40753 -16.21606 -15.97305 -15.30047 -15.22751 -15.12258 -14.71778 -14.62799 -14.44831 -14.25462 -14.13486 -14.07651 -13.73300 -13.53482 -13.36680 -13.29308 -13.22516 -12.91437 -12.74240 -12.24289 -12.08293 -12.06917 -12.01246 -11.91559 -11.64231 -11.32102 -11.10602 -10.61183 -10.08411 -9.58132 -9.36238 -8.18212 -6.06219 0.67747 0.74175 0.79955 1.06508 1.32724 1.44976 1.55846 1.73616 1.82899 1.95779 2.21920 2.67650 2.90172 3.01309 3.21108 3.28435 3.38849 3.50847 3.89827 4.06518 4.14070 4.22737 4.24144 4.28781 4.39570 4.43728 4.63118 4.71650 4.73906 4.74608 4.89740 5.05740 5.13572 5.19644 5.32574 5.35135 5.61295 5.76163 5.79469 5.98135 6.19646 6.39825 6.52845 6.97712 7.33126 7.75237 8.63510 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.003149 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.763005 B = 8890.581456 C =10286.413799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.154 4.154 3 C 0.489 3.511 4 O -0.517 6.517 5 O -0.331 6.331 6 C 0.083 3.917 7 C 0.452 3.548 8 O -0.608 6.608 9 N -0.411 5.411 10 C -0.382 4.382 11 H 0.112 0.888 12 C 0.013 3.987 13 N -0.861 5.861 14 Si 0.984 3.016 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.208 3.792 19 C -0.147 4.147 20 C -0.119 4.119 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.094 4.094 24 C -0.105 4.105 25 C 0.217 3.783 26 F -0.148 7.148 27 F -0.160 7.160 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.273 0.727 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 -11.674 1.950 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.157 4.157 3 C 0.332 3.668 4 O -0.406 6.406 5 O -0.246 6.246 6 C 0.007 3.993 7 C 0.242 3.758 8 O -0.494 6.494 9 N -0.128 5.128 10 C -0.507 4.507 11 H 0.130 0.870 12 C -0.194 4.194 13 N -0.495 5.495 14 Si 0.808 3.192 15 H -0.183 1.183 16 H -0.203 1.203 17 H -0.204 1.204 18 C 0.118 3.882 19 C -0.167 4.167 20 C -0.137 4.137 21 C -0.155 4.155 22 C -0.139 4.139 23 C -0.113 4.113 24 C -0.142 4.142 25 C 0.181 3.819 26 F -0.128 7.128 27 F -0.141 7.141 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.154 0.846 38 H 0.103 0.897 39 H 0.156 0.844 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.523 -11.527 2.026 11.973 hybrid contribution 1.342 0.755 -1.025 1.849 sum -1.181 -10.772 1.001 10.883 Atomic orbital electron populations 1.21462 0.85833 1.05796 1.04160 1.22572 1.00079 0.85766 1.07252 1.22735 0.82500 0.86359 0.75190 1.90733 1.23827 1.84289 1.41752 1.86467 1.51933 1.18814 1.67383 1.22443 0.95409 0.79496 1.01960 1.19972 0.86619 0.83813 0.85419 1.90568 1.26795 1.80115 1.51966 1.41418 1.17426 1.05801 1.48150 1.20019 0.91105 0.94013 1.45605 0.87029 1.26037 1.02891 0.95408 0.95040 1.70089 1.33424 1.02951 1.43040 0.84998 0.77728 0.78724 0.77754 1.18335 1.20316 1.20362 1.17363 0.90450 0.89511 0.90835 1.21146 1.00771 1.00348 0.94446 1.21107 0.95791 0.96398 1.00451 1.21241 0.98317 1.01156 0.94799 1.21081 0.99783 0.97106 0.95905 1.20837 0.95646 0.97134 0.97717 1.24851 1.04433 0.95861 0.89053 1.20011 0.79877 0.91287 0.90770 1.93050 1.72151 1.63842 1.83735 1.93089 1.44654 1.92598 1.83743 0.90785 0.87099 0.90535 0.88491 0.88004 0.91630 0.88015 0.84026 0.83311 0.84560 0.89663 0.84403 0.79991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.45 71.98 0.68 -1.53 16 2 C -0.15 -3.57 2.64 -52.93 -0.14 -3.71 16 3 C 0.49 16.08 7.50 71.24 0.53 16.61 16 4 O -0.52 -19.51 14.90 21.98 0.33 -19.18 16 5 O -0.33 -12.57 9.03 -45.05 -0.41 -12.98 16 6 C 0.08 3.45 4.49 71.24 0.32 3.77 16 7 C 0.45 22.22 7.66 87.66 0.67 22.89 16 8 O -0.61 -32.76 16.48 15.75 0.26 -32.50 16 9 N -0.41 -20.82 2.66 -458.90 -1.22 -22.04 16 10 C -0.38 -18.88 9.19 84.02 0.77 -18.10 16 11 H 0.11 5.16 6.46 -2.91 -0.02 5.14 16 12 C 0.01 0.63 5.24 84.91 0.44 1.07 16 13 N -0.86 -43.43 10.34 21.65 0.22 -43.20 16 14 Si 0.98 38.75 29.59 68.60 2.03 40.78 16 15 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 16 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 18 C 0.21 10.33 2.29 38.21 0.09 10.42 16 19 C -0.15 -6.70 9.95 22.40 0.22 -6.48 16 20 C -0.12 -4.46 10.04 22.25 0.22 -4.24 16 21 C -0.14 -4.78 10.04 22.30 0.22 -4.56 16 22 C -0.12 -4.67 10.04 22.25 0.22 -4.45 16 23 C -0.09 -4.44 8.66 22.40 0.19 -4.24 16 24 C -0.11 -1.56 9.85 30.59 0.30 -1.26 16 25 C 0.22 4.80 5.13 30.60 0.16 4.95 16 26 F -0.15 -3.02 17.14 44.97 0.77 -2.25 16 27 F -0.16 -4.64 15.72 44.97 0.71 -3.94 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 1.32 7.90 -2.38 -0.02 1.30 16 30 H 0.08 1.78 7.50 -2.39 -0.02 1.76 16 31 H 0.10 3.97 8.13 -2.38 -0.02 3.95 16 32 H 0.10 3.96 7.52 -2.39 -0.02 3.94 16 33 H 0.27 13.16 8.32 -92.71 -0.77 12.39 16 34 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.09 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.18 1.14 8.05 -2.39 -0.02 1.12 16 Total: -1.00 -68.26 359.78 8.69 -59.57 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 1.08 Total: 24.59 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 4.92 Total: 11.15 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -1.00 Total: -65.24 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: 0.18 Total: -64.65 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 1.48 Total: -6.19 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -68.26 8.69 -59.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817251938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.963 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds