Wall clock time and date at job start Tue Mar 31 2020 22:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 115.54538 * 2 1 4 4 O 1.20824 * 120.00124 * 145.58469 * 3 2 1 5 5 O 1.34233 * 120.00048 * 325.57337 * 3 2 1 6 6 C 1.45206 * 117.00125 * 185.22735 * 5 3 2 7 7 C 1.50694 * 109.46813 * 175.09866 * 6 5 3 8 8 O 1.21280 * 120.00310 * 5.07378 * 7 6 5 9 9 N 1.34782 * 119.99734 * 185.06912 * 7 6 5 10 10 C 1.37139 * 119.99892 * 352.17219 * 9 7 6 11 11 H 1.08004 * 120.00030 * 296.81553 * 10 9 7 12 12 C 1.38888 * 120.00133 * 116.81749 * 10 9 7 13 13 N 1.31419 * 120.00303 * 173.54387 * 12 10 9 14 14 Si 1.86800 * 119.99910 * 353.54999 * 12 10 9 15 15 H 1.48495 * 109.47442 * 83.75174 * 14 12 10 16 16 H 1.48508 * 109.46805 * 203.75317 * 14 12 10 17 17 H 1.48504 * 109.46990 * 323.74881 * 14 12 10 18 18 C 1.39786 * 119.99934 * 172.16810 * 9 7 6 19 19 C 1.38961 * 120.07777 * 352.63542 * 18 9 7 20 20 C 1.38086 * 119.91637 * 179.74010 * 19 18 9 21 21 C 1.38309 * 120.08164 * 0.53829 * 20 19 18 22 22 C 1.38308 * 120.15127 * 359.71193 * 21 20 19 23 23 C 1.38078 * 120.08318 * 0.03240 * 22 21 20 24 24 C 1.52991 * 117.50353 * 214.32622 * 2 1 3 25 25 C 1.52994 * 117.50100 * 145.66234 * 2 1 3 26 26 F 1.39904 * 117.50344 * 215.00865 * 25 2 1 27 27 F 1.39902 * 117.49874 * 0.02562 * 25 2 1 28 28 H 1.08999 * 109.47091 * 34.42641 * 1 2 3 29 29 H 1.09004 * 109.46952 * 154.41886 * 1 2 3 30 30 H 1.08997 * 109.47621 * 274.42111 * 1 2 3 31 31 H 1.09002 * 109.46806 * 295.09694 * 6 5 3 32 32 H 1.08994 * 109.46953 * 55.09562 * 6 5 3 33 33 H 0.96999 * 120.00746 * 179.97438 * 13 12 10 34 34 H 1.07991 * 120.03755 * 0.02562 * 19 18 9 35 35 H 1.08003 * 119.95809 * 180.25030 * 20 19 18 36 36 H 1.08000 * 119.92474 * 179.74268 * 21 20 19 37 37 H 1.08003 * 119.95483 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.04017 * 179.97438 * 23 22 21 39 39 H 1.08999 * 117.50008 * 359.97438 * 24 2 1 40 40 H 1.08996 * 117.50125 * 144.99700 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2192 1.5325 0.5914 5 8 1.6041 2.3787 -0.6572 6 6 2.3421 3.6280 -0.7130 7 6 1.6028 4.6096 -1.5853 8 8 0.5133 4.3216 -2.0336 9 7 2.1523 5.8075 -1.8672 10 6 3.3047 6.1991 -1.2353 11 1 3.3122 6.3403 -0.1645 12 6 4.4622 6.4141 -1.9721 13 7 5.5301 6.9102 -1.3885 14 14 4.5010 5.9983 -3.7928 15 1 3.9342 7.1288 -4.5711 16 1 5.9044 5.7601 -4.2163 17 1 3.6955 4.7751 -4.0385 18 6 1.5476 6.6508 -2.8038 19 6 0.4706 6.1976 -3.5560 20 6 -0.1276 7.0353 -4.4764 21 6 0.3509 8.3202 -4.6582 22 6 1.4260 8.7727 -3.9150 23 6 2.0258 7.9424 -2.9890 24 6 2.2365 -1.1207 -0.7652 25 6 2.2365 -1.1206 0.7655 26 9 3.4364 -0.8046 1.4118 27 9 1.4340 -2.0672 1.4114 28 1 -0.3633 0.8477 -0.5810 29 1 -0.3633 -0.9270 -0.4438 30 1 -0.3634 0.0792 1.0245 31 1 2.4399 4.0374 0.2925 32 1 3.3329 3.4464 -1.1293 33 1 6.3386 7.0600 -1.9030 34 1 0.0991 5.1932 -3.4174 35 1 -0.9673 6.6851 -5.0585 36 1 -0.1163 8.9718 -5.3818 37 1 1.7968 9.7768 -4.0592 38 1 2.8655 8.2964 -2.4093 39 1 1.6114 -1.8583 -1.2684 40 1 3.1714 -0.8746 -1.2687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817251939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:47 Heat of formation + Delta-G solvation = -130.047842 kcal Electronic energy + Delta-G solvation = -29487.696994 eV Core-core repulsion = 24905.934550 eV Total energy + Delta-G solvation = -4581.762444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.90092 -47.53342 -40.69178 -39.99076 -37.78960 -37.01769 -36.02710 -35.22673 -32.36049 -30.21465 -30.02753 -29.06479 -27.65677 -25.33409 -24.20463 -22.93719 -22.09898 -21.46668 -20.19769 -19.63754 -18.29705 -18.21881 -17.22185 -17.01421 -16.49008 -16.32780 -16.08761 -15.96897 -15.63273 -15.12822 -14.66028 -14.26959 -14.15964 -13.93713 -13.82232 -13.63346 -13.47888 -13.34992 -13.19413 -12.98560 -12.75825 -12.63473 -12.57134 -12.45292 -12.05840 -11.97191 -11.46497 -11.15372 -11.06634 -10.94488 -10.54127 -10.49460 -10.39943 -10.32311 -10.17352 -9.48357 -9.11080 -8.67357 -8.18185 -7.13194 -6.68901 -4.74609 1.86053 1.94293 2.11964 2.19166 2.68293 2.93869 3.01986 3.10164 3.17701 3.30867 3.74094 3.82855 3.96903 4.19790 4.26274 4.50044 4.66142 4.71422 5.03840 5.08283 5.26837 5.34516 5.42129 5.48209 5.55177 5.62839 5.65918 5.74934 5.82772 5.93283 6.23291 6.31234 6.45213 6.46841 6.72656 7.08923 7.17076 7.20632 7.29120 7.60432 7.70559 7.88298 8.05095 8.63343 8.85491 9.17571 10.32964 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016672 B = 0.003321 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.094214 B = 8429.180525 C = 9503.665006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.137 4.137 3 C 0.492 3.508 4 O -0.483 6.483 5 O -0.328 6.328 6 C 0.071 3.929 7 C 0.503 3.497 8 O -0.540 6.540 9 N -0.405 5.405 10 C -0.382 4.382 11 H 0.109 0.891 12 C 0.093 3.907 13 N -0.847 5.847 14 Si 0.863 3.137 15 H -0.251 1.251 16 H -0.280 1.280 17 H -0.263 1.263 18 C 0.155 3.845 19 C -0.178 4.178 20 C -0.111 4.111 21 C -0.166 4.166 22 C -0.110 4.110 23 C -0.138 4.138 24 C -0.143 4.143 25 C 0.231 3.769 26 F -0.138 7.138 27 F -0.151 7.151 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.282 0.718 34 H 0.170 0.830 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.901 -10.916 -1.525 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.333 3.667 4 O -0.369 6.369 5 O -0.243 6.243 6 C -0.005 4.005 7 C 0.294 3.706 8 O -0.421 6.421 9 N -0.116 5.116 10 C -0.508 4.508 11 H 0.126 0.874 12 C -0.120 4.120 13 N -0.478 5.478 14 Si 0.687 3.313 15 H -0.175 1.175 16 H -0.206 1.206 17 H -0.188 1.188 18 C 0.060 3.940 19 C -0.198 4.198 20 C -0.130 4.130 21 C -0.185 4.185 22 C -0.129 4.129 23 C -0.158 4.158 24 C -0.180 4.180 25 C 0.194 3.806 26 F -0.118 7.118 27 F -0.132 7.132 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.187 0.813 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.842 -10.961 -1.441 13.001 hybrid contribution 0.638 0.126 -0.562 0.860 sum -6.204 -10.835 -2.003 12.645 Atomic orbital electron populations 1.21431 0.87281 1.04792 1.04117 1.22406 0.99072 0.87757 1.04730 1.21850 0.82837 0.85341 0.76710 1.90785 1.22440 1.83445 1.40265 1.86395 1.48739 1.20868 1.68341 1.22656 0.95181 0.80140 1.02506 1.20329 0.85906 0.82245 0.82130 1.90344 1.21070 1.77334 1.53360 1.41172 1.23383 1.11803 1.35287 1.19034 0.84632 1.52519 0.94640 0.87355 1.25536 0.94668 0.92812 0.98951 1.69648 1.02761 1.37633 1.37804 0.86962 0.78085 0.81388 0.84834 1.17496 1.20590 1.18763 1.18600 0.93315 0.90706 0.91412 1.22472 0.97145 1.03329 0.96868 1.20980 0.99655 0.94053 0.98293 1.20939 0.98905 0.96735 1.01930 1.20858 0.96387 0.99057 0.96580 1.21087 1.02174 0.92415 1.00157 1.24574 1.04247 0.97822 0.91391 1.19731 0.80593 0.91236 0.89056 1.93145 1.43274 1.92305 1.83045 1.93046 1.72336 1.64274 1.83506 0.88712 0.90527 0.90689 0.87656 0.87502 0.90754 0.81337 0.86895 0.87300 0.86756 0.84336 0.84273 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.45 37.16 0.35 -0.79 16 2 C -0.14 -1.63 2.64 -155.67 -0.41 -2.04 16 3 C 0.49 7.87 7.49 36.01 0.27 8.14 16 4 O -0.48 -9.01 14.88 -18.75 -0.28 -9.29 16 5 O -0.33 -5.79 9.03 -45.90 -0.41 -6.20 16 6 C 0.07 1.39 4.79 36.00 0.17 1.56 16 7 C 0.50 11.08 7.59 -10.99 -0.08 10.99 16 8 O -0.54 -12.23 13.05 -14.05 -0.18 -12.41 16 9 N -0.40 -9.40 1.99 -58.98 -0.12 -9.52 16 10 C -0.38 -9.33 7.56 -14.94 -0.11 -9.44 16 11 H 0.11 2.79 8.06 -52.48 -0.42 2.37 16 12 C 0.09 2.30 4.51 -17.49 -0.08 2.22 16 13 N -0.85 -21.92 13.96 55.49 0.77 -21.14 16 14 Si 0.86 19.83 25.54 -169.99 -4.34 15.49 16 15 H -0.25 -5.71 6.49 56.52 0.37 -5.34 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.15 3.50 4.75 -83.69 -0.40 3.10 16 19 C -0.18 -3.76 8.96 -39.37 -0.35 -4.11 16 20 C -0.11 -2.01 10.04 -39.61 -0.40 -2.40 16 21 C -0.17 -2.85 10.04 -39.53 -0.40 -3.25 16 22 C -0.11 -2.04 10.04 -39.61 -0.40 -2.43 16 23 C -0.14 -2.97 6.93 -39.37 -0.27 -3.24 16 24 C -0.14 -1.27 9.85 -26.70 -0.26 -1.53 16 25 C 0.23 2.70 5.13 -26.70 -0.14 2.56 16 26 F -0.14 -2.02 15.72 2.25 0.04 -1.98 16 27 F -0.15 -1.67 17.14 2.25 0.04 -1.63 16 28 H 0.09 1.01 7.50 -51.93 -0.39 0.63 16 29 H 0.08 0.54 7.90 -51.93 -0.41 0.13 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 1.99 8.12 -51.93 -0.42 1.57 16 32 H 0.11 2.11 8.03 -51.93 -0.42 1.70 16 33 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.17 3.68 4.76 -54.93 -0.26 3.42 16 35 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.14 3.14 6.33 -52.49 -0.33 2.81 16 39 H 0.14 0.78 8.05 -51.93 -0.42 0.36 16 40 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -28.90 349.32 -6.09 -34.98 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.36 Total: 7.11 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.51 Total: -0.66 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.66 Total: -30.66 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.88 Total: -27.90 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.07 Total: -3.62 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.34 Total: 15.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.90 -6.09 -34.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817251939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.064 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds