Wall clock time and date at job start Tue Mar 31 2020 22:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 115.54538 * 2 1 4 4 O 1.20824 * 120.00124 * 145.58469 * 3 2 1 5 5 O 1.34233 * 120.00048 * 325.57337 * 3 2 1 6 6 C 1.45206 * 117.00125 * 185.22735 * 5 3 2 7 7 C 1.50694 * 109.46813 * 175.09866 * 6 5 3 8 8 O 1.21280 * 120.00310 * 5.07378 * 7 6 5 9 9 N 1.34782 * 119.99734 * 185.06912 * 7 6 5 10 10 C 1.37139 * 119.99892 * 352.17219 * 9 7 6 11 11 H 1.08004 * 120.00030 * 296.81553 * 10 9 7 12 12 C 1.38888 * 120.00133 * 116.81749 * 10 9 7 13 13 N 1.31419 * 120.00303 * 173.54387 * 12 10 9 14 14 Si 1.86800 * 119.99910 * 353.54999 * 12 10 9 15 15 H 1.48495 * 109.47442 * 83.75174 * 14 12 10 16 16 H 1.48508 * 109.46805 * 203.75317 * 14 12 10 17 17 H 1.48504 * 109.46990 * 323.74881 * 14 12 10 18 18 C 1.39786 * 119.99934 * 172.16810 * 9 7 6 19 19 C 1.38961 * 120.07777 * 352.63542 * 18 9 7 20 20 C 1.38086 * 119.91637 * 179.74010 * 19 18 9 21 21 C 1.38309 * 120.08164 * 0.53829 * 20 19 18 22 22 C 1.38308 * 120.15127 * 359.71193 * 21 20 19 23 23 C 1.38078 * 120.08318 * 0.03240 * 22 21 20 24 24 C 1.52991 * 117.50353 * 214.32622 * 2 1 3 25 25 C 1.52994 * 117.50100 * 145.66234 * 2 1 3 26 26 F 1.39904 * 117.50344 * 215.00865 * 25 2 1 27 27 F 1.39902 * 117.49874 * 0.02562 * 25 2 1 28 28 H 1.08999 * 109.47091 * 34.42641 * 1 2 3 29 29 H 1.09004 * 109.46952 * 154.41886 * 1 2 3 30 30 H 1.08997 * 109.47621 * 274.42111 * 1 2 3 31 31 H 1.09002 * 109.46806 * 295.09694 * 6 5 3 32 32 H 1.08994 * 109.46953 * 55.09562 * 6 5 3 33 33 H 0.96999 * 120.00746 * 179.97438 * 13 12 10 34 34 H 1.07991 * 120.03755 * 0.02562 * 19 18 9 35 35 H 1.08003 * 119.95809 * 180.25030 * 20 19 18 36 36 H 1.08000 * 119.92474 * 179.74268 * 21 20 19 37 37 H 1.08003 * 119.95483 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.04017 * 179.97438 * 23 22 21 39 39 H 1.08999 * 117.50008 * 359.97438 * 24 2 1 40 40 H 1.08996 * 117.50125 * 144.99700 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2192 1.5325 0.5914 5 8 1.6041 2.3787 -0.6572 6 6 2.3421 3.6280 -0.7130 7 6 1.6028 4.6096 -1.5853 8 8 0.5133 4.3216 -2.0336 9 7 2.1523 5.8075 -1.8672 10 6 3.3047 6.1991 -1.2353 11 1 3.3122 6.3403 -0.1645 12 6 4.4622 6.4141 -1.9721 13 7 5.5301 6.9102 -1.3885 14 14 4.5010 5.9983 -3.7928 15 1 3.9342 7.1288 -4.5711 16 1 5.9044 5.7601 -4.2163 17 1 3.6955 4.7751 -4.0385 18 6 1.5476 6.6508 -2.8038 19 6 0.4706 6.1976 -3.5560 20 6 -0.1276 7.0353 -4.4764 21 6 0.3509 8.3202 -4.6582 22 6 1.4260 8.7727 -3.9150 23 6 2.0258 7.9424 -2.9890 24 6 2.2365 -1.1207 -0.7652 25 6 2.2365 -1.1206 0.7655 26 9 3.4364 -0.8046 1.4118 27 9 1.4340 -2.0672 1.4114 28 1 -0.3633 0.8477 -0.5810 29 1 -0.3633 -0.9270 -0.4438 30 1 -0.3634 0.0792 1.0245 31 1 2.4399 4.0374 0.2925 32 1 3.3329 3.4464 -1.1293 33 1 6.3386 7.0600 -1.9030 34 1 0.0991 5.1932 -3.4174 35 1 -0.9673 6.6851 -5.0585 36 1 -0.1163 8.9718 -5.3818 37 1 1.7968 9.7768 -4.0592 38 1 2.8655 8.2964 -2.4093 39 1 1.6114 -1.8583 -1.2684 40 1 3.1714 -0.8746 -1.2687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817251939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:46 Heat of formation + Delta-G solvation = -144.194493 kcal Electronic energy + Delta-G solvation = -29488.310439 eV Core-core repulsion = 24905.934550 eV Total energy + Delta-G solvation = -4582.375889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.82982 -48.49438 -42.14711 -41.54397 -39.28212 -38.18569 -37.32528 -36.97371 -34.26204 -31.74250 -31.55643 -30.01434 -29.08298 -27.17432 -25.39896 -23.80826 -23.59771 -23.01220 -21.42307 -21.34002 -19.98049 -19.28520 -18.43495 -18.33613 -17.97831 -17.70277 -17.66076 -17.20428 -17.04866 -16.40201 -16.30272 -15.82752 -15.40553 -15.14236 -15.04970 -14.84391 -14.71646 -14.69889 -14.45506 -14.31259 -14.19514 -14.04613 -13.85120 -13.62384 -13.42081 -13.29456 -13.23080 -12.77730 -12.56817 -12.19117 -12.08340 -12.01200 -11.90079 -11.65896 -11.27870 -11.10733 -10.91390 -10.36489 -9.70969 -8.86159 -8.57511 -6.69422 0.38462 0.58899 0.67663 0.91736 1.18045 1.24171 1.30856 1.60685 1.81062 1.93952 2.07938 2.36947 2.66242 2.88832 3.08404 3.21973 3.37575 3.48495 3.58004 4.03408 4.07232 4.19287 4.21174 4.23605 4.42234 4.47413 4.62209 4.69719 4.72146 4.74746 4.78914 4.83541 5.09306 5.19309 5.24019 5.46438 5.59346 5.66699 5.73220 5.90783 5.99046 6.33163 6.38932 6.75733 7.03308 7.36587 8.42527 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016672 B = 0.003321 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.094214 B = 8429.180525 C = 9503.665006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.151 4.151 3 C 0.489 3.511 4 O -0.516 6.516 5 O -0.330 6.330 6 C 0.078 3.922 7 C 0.498 3.502 8 O -0.548 6.548 9 N -0.415 5.415 10 C -0.373 4.373 11 H 0.084 0.916 12 C 0.069 3.931 13 N -0.880 5.880 14 Si 0.905 3.095 15 H -0.244 1.244 16 H -0.273 1.273 17 H -0.275 1.275 18 C 0.124 3.876 19 C -0.196 4.196 20 C -0.106 4.106 21 C -0.152 4.152 22 C -0.109 4.109 23 C -0.159 4.159 24 C -0.107 4.107 25 C 0.216 3.784 26 F -0.162 7.162 27 F -0.147 7.147 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.287 0.713 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.184 0.816 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.719 -11.524 -4.085 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.154 4.154 3 C 0.332 3.668 4 O -0.404 6.404 5 O -0.245 6.245 6 C 0.002 3.998 7 C 0.289 3.711 8 O -0.430 6.430 9 N -0.128 5.128 10 C -0.500 4.500 11 H 0.102 0.898 12 C -0.140 4.140 13 N -0.513 5.513 14 Si 0.729 3.271 15 H -0.168 1.168 16 H -0.198 1.198 17 H -0.200 1.200 18 C 0.029 3.971 19 C -0.215 4.215 20 C -0.124 4.124 21 C -0.170 4.170 22 C -0.128 4.128 23 C -0.180 4.180 24 C -0.144 4.144 25 C 0.179 3.821 26 F -0.142 7.142 27 F -0.127 7.127 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.175 0.825 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.162 0.838 38 H 0.135 0.865 39 H 0.202 0.798 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.676 -11.565 -4.007 15.002 hybrid contribution 1.082 0.357 0.249 1.166 sum -7.594 -11.208 -3.758 14.050 Atomic orbital electron populations 1.21479 0.85408 1.05966 1.04315 1.22588 1.00328 0.85471 1.06993 1.22776 0.82508 0.86217 0.75345 1.90769 1.24092 1.84007 1.41559 1.86422 1.48677 1.20554 1.68870 1.22400 0.94678 0.80897 1.01818 1.20597 0.85927 0.82364 0.82167 1.90329 1.21308 1.77590 1.53805 1.41213 1.23239 1.12514 1.35813 1.18769 0.85498 1.52014 0.93713 0.89844 1.25889 0.94270 0.92595 1.01279 1.69697 1.03413 1.39183 1.39032 0.86320 0.78034 0.80705 0.82069 1.16813 1.19801 1.19998 1.18851 0.94689 0.91327 0.92193 1.22491 0.97331 1.03643 0.98065 1.21403 0.99887 0.94003 0.97116 1.21428 0.97568 0.96692 1.01342 1.21267 0.96318 0.99886 0.95321 1.21082 1.02508 0.92784 1.01626 1.24868 1.04427 0.96008 0.89144 1.20029 0.79909 0.91427 0.90735 1.93093 1.44742 1.92607 1.83759 1.93052 1.72094 1.63836 1.83706 0.90091 0.87135 0.90656 0.87827 0.88215 0.90302 0.82483 0.83360 0.82850 0.83820 0.86531 0.79829 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.45 71.98 0.68 -1.31 16 2 C -0.15 -3.41 2.64 -52.93 -0.14 -3.55 16 3 C 0.49 15.93 7.49 71.24 0.53 16.46 16 4 O -0.52 -20.02 14.88 21.97 0.33 -19.70 16 5 O -0.33 -11.95 9.03 -45.10 -0.41 -12.36 16 6 C 0.08 3.21 4.79 71.23 0.34 3.55 16 7 C 0.50 22.68 7.59 87.65 0.67 23.35 16 8 O -0.55 -25.32 13.05 15.72 0.21 -25.11 16 9 N -0.42 -19.91 1.99 -458.89 -0.91 -20.82 16 10 C -0.37 -19.07 7.56 84.02 0.64 -18.43 16 11 H 0.08 4.59 8.06 -2.91 -0.02 4.57 16 12 C 0.07 3.52 4.51 84.91 0.38 3.91 16 13 N -0.88 -46.86 13.96 21.65 0.30 -46.56 16 14 Si 0.91 41.25 25.54 68.60 1.75 43.00 16 15 H -0.24 -10.78 6.49 99.48 0.65 -10.13 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C 0.12 5.61 4.75 38.22 0.18 5.80 16 19 C -0.20 -8.05 8.96 22.41 0.20 -7.85 16 20 C -0.11 -3.46 10.04 22.25 0.22 -3.24 16 21 C -0.15 -4.54 10.04 22.30 0.22 -4.31 16 22 C -0.11 -3.74 10.04 22.25 0.22 -3.52 16 23 C -0.16 -6.81 6.93 22.41 0.16 -6.65 16 24 C -0.11 -1.61 9.85 30.61 0.30 -1.31 16 25 C 0.22 4.78 5.13 30.62 0.16 4.93 16 26 F -0.16 -4.80 15.72 44.97 0.71 -4.09 16 27 F -0.15 -2.97 17.14 44.97 0.77 -2.20 16 28 H 0.08 1.65 7.50 -2.39 -0.02 1.63 16 29 H 0.11 1.15 7.90 -2.38 -0.02 1.13 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 4.20 8.12 -2.39 -0.02 4.18 16 32 H 0.10 4.18 8.03 -2.39 -0.02 4.16 16 33 H 0.29 14.22 8.31 -92.71 -0.77 13.45 16 34 H 0.16 6.82 4.76 -41.57 -0.20 6.63 16 35 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 37 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 38 H 0.12 5.42 6.33 -2.91 -0.02 5.40 16 39 H 0.18 1.11 8.05 -2.39 -0.02 1.09 16 40 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -65.53 349.32 8.36 -57.18 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.85 Total: 22.82 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 4.77 Total: 7.83 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -0.61 Total: -67.38 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: 0.12 Total: -57.17 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 1.48 Total: -6.29 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.75 Total: 43.00 kcal Total: -65.53 8.36 -57.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817251939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.019 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds