Wall clock time and date at job start Tue Mar 31 2020 22:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48494 * 109.47394 * 240.00392 * 3 2 1 5 5 H 1.48504 * 109.46957 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46766 * 120.00504 * 3 2 1 7 7 C 1.38650 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99839 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99937 * 185.06430 * 9 7 2 11 11 C 1.38872 * 120.06911 * 354.45911 * 10 9 7 12 12 C 1.38101 * 119.93102 * 180.02562 * 11 10 9 13 13 C 1.38311 * 120.06573 * 0.02601 * 12 11 10 14 14 C 1.50694 * 119.92822 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47167 * 90.00078 * 14 13 12 16 16 N 1.30977 * 126.45105 * 89.71029 * 15 14 13 17 17 C 1.35189 * 105.58177 * 179.97438 * 16 15 14 18 18 C 1.48542 * 126.40281 * 180.12861 * 17 16 15 19 19 C 1.39147 * 120.49814 * 179.97438 * 18 17 16 20 20 C 1.39541 * 118.21618 * 179.80492 * 19 18 17 21 21 N 1.38559 * 120.49479 * 180.21732 * 20 19 18 22 22 N 1.32995 * 119.00292 * 0.46734 * 20 19 18 23 23 C 1.31787 * 120.90641 * 359.74757 * 22 20 19 24 24 N 1.31638 * 121.97637 * 0.02562 * 23 22 20 25 25 N 1.30682 * 107.18809 * 0.34536 * 17 16 15 26 26 O 1.21293 * 110.11160 * 359.78433 * 25 17 16 27 27 C 1.38297 * 120.13717 * 0.24849 * 13 12 11 28 28 C 1.38104 * 120.06879 * 359.45329 * 27 13 12 29 29 H 0.97003 * 120.00122 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03873 * 0.04537 * 11 10 9 31 31 H 1.07996 * 119.96953 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.46988 * 209.99753 * 14 13 12 33 33 H 1.08997 * 109.47456 * 329.99602 * 14 13 12 34 34 H 1.08000 * 120.89390 * 0.02562 * 19 18 17 35 35 H 0.97000 * 119.99922 * 180.25670 * 21 20 19 36 36 H 0.96998 * 120.00544 * 0.25575 * 21 20 19 37 37 H 1.08000 * 119.00996 * 179.97438 * 23 22 20 38 38 H 1.08001 * 119.96611 * 179.70697 * 27 13 12 39 39 H 1.08002 * 120.03353 * 180.26931 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6962 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1057 11 6 3.4571 -3.4395 0.0922 12 6 4.2024 -4.5971 0.2000 13 6 3.5686 -5.8205 0.3206 14 6 4.3849 -7.0818 0.4374 15 6 4.6644 -7.3666 1.8906 16 7 3.9204 -8.0770 2.7014 17 6 4.5609 -8.0587 3.8918 18 6 4.1170 -8.7266 5.1421 19 6 4.8763 -8.6270 6.3039 20 6 4.4125 -9.2698 7.4523 21 7 5.1287 -9.1978 8.6362 22 7 3.2753 -9.9568 7.3920 23 6 2.5876 -10.0305 6.2702 24 7 2.9881 -9.4350 5.1666 25 7 5.6413 -7.3397 3.7379 26 8 5.7146 -6.9360 2.5965 27 6 2.1874 -5.8892 0.3286 28 6 1.4366 -4.7345 0.2274 29 1 -0.4850 0.8401 0.0004 30 1 3.9526 -2.4844 -0.0020 31 1 5.2812 -4.5472 0.1892 32 1 3.8310 -7.9146 0.0040 33 1 5.3271 -6.9556 -0.0958 34 1 5.7979 -8.0641 6.3174 35 1 4.8016 -9.6505 9.4292 36 1 5.9573 -8.6947 8.6720 37 1 1.6683 -10.5971 6.2556 38 1 1.6954 -6.8464 0.4182 39 1 0.3580 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820988010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:46 Heat of formation + Delta-G solvation = 122.661025 kcal Electronic energy + Delta-G solvation = -26810.858201 eV Core-core repulsion = 22723.035973 eV Total energy + Delta-G solvation = -4087.822228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.62153 -41.18741 -39.15885 -36.98921 -36.41133 -35.63625 -34.15354 -32.78454 -32.26978 -31.05002 -30.28785 -30.18636 -26.74470 -25.89480 -25.23989 -24.56893 -23.20625 -22.04854 -21.85059 -20.59344 -18.70049 -18.33481 -18.21034 -18.03565 -17.20920 -16.94754 -15.94772 -15.74633 -15.34759 -15.28364 -14.93847 -14.70882 -14.58221 -14.47237 -14.14765 -13.74280 -13.51958 -13.05122 -12.78657 -12.64132 -12.60076 -11.96052 -11.81298 -11.61162 -11.35115 -11.23384 -11.19675 -11.01421 -10.84074 -10.72219 -10.50079 -10.46793 -9.70374 -9.61308 -9.41456 -8.89904 -8.85577 -8.26597 -7.31372 -6.51718 -4.10579 0.22965 0.88892 1.26903 2.06443 2.15536 2.36715 2.75363 2.85775 3.04573 3.09593 3.11495 3.13704 3.62830 3.63292 3.91436 4.10953 4.42070 4.46578 4.53065 4.90648 4.97842 5.02293 5.12225 5.17533 5.20317 5.24652 5.50012 5.62324 5.68062 5.78042 5.81947 5.97788 6.14053 6.33527 6.38092 6.61267 6.68666 6.81220 6.96435 7.15174 7.16942 7.24500 7.36132 7.72339 7.89362 7.92793 8.05061 8.93324 9.61658 10.65702 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014178 B = 0.002228 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.368749 B =12561.669620 C =13144.383081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.054 4.054 13 C -0.207 4.207 14 C 0.032 3.968 15 C 0.205 3.795 16 N -0.448 5.448 17 C 0.204 3.796 18 C 0.286 3.714 19 C -0.257 4.257 20 C 0.444 3.556 21 N -0.833 5.833 22 N -0.576 5.576 23 C 0.347 3.653 24 N -0.524 5.524 25 N -0.365 5.365 26 O 0.089 5.911 27 C -0.050 4.050 28 C -0.194 4.194 29 H 0.272 0.728 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.149 0.851 35 H 0.410 0.590 36 H 0.413 0.587 37 H 0.205 0.795 38 H 0.117 0.883 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.872 -17.518 10.348 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.073 4.073 13 C -0.209 4.209 14 C -0.007 4.007 15 C -0.015 4.015 16 N -0.180 5.180 17 C -0.067 4.067 18 C 0.142 3.858 19 C -0.287 4.287 20 C 0.197 3.803 21 N -0.378 5.378 22 N -0.301 5.301 23 C 0.057 3.943 24 N -0.243 5.243 25 N -0.071 5.071 26 O 0.025 5.975 27 C -0.068 4.068 28 C -0.214 4.214 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.167 0.833 35 H 0.240 0.760 36 H 0.244 0.756 37 H 0.221 0.779 38 H 0.135 0.865 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.799 -17.886 11.034 23.628 hybrid contribution 1.412 1.494 0.338 2.083 sum 12.211 -16.392 11.372 23.391 Atomic orbital electron populations 1.70029 1.06009 1.27982 1.45304 1.25321 0.95864 0.98940 0.96348 0.85765 0.78729 0.79618 0.79258 1.19376 1.20209 1.19453 1.21314 0.91850 0.80743 1.53071 0.88947 1.83982 1.34501 1.11552 1.77439 1.19457 0.90364 0.88067 0.91524 1.21133 0.93758 0.98920 1.11780 1.20647 0.98512 0.91556 0.96536 1.18790 0.93433 0.92490 1.16147 1.19034 1.01873 0.98571 0.81219 1.29322 0.82601 0.90269 0.99354 1.72130 1.26679 1.19819 0.99337 1.23205 0.90353 0.99436 0.93702 1.17790 0.89737 0.90610 0.87621 1.21971 1.05077 1.08737 0.92920 1.18324 0.87887 0.87514 0.86564 1.42159 1.27159 1.58766 1.09683 1.67952 1.07918 1.23290 1.30972 1.24759 0.97050 0.91240 0.81241 1.68315 1.14510 1.11249 1.30274 1.74810 1.20177 1.14033 0.98078 1.85288 1.41809 1.55477 1.14952 1.20553 0.92620 0.97178 0.96467 1.20220 0.99767 0.90188 1.11196 0.91820 0.85333 0.87038 0.86848 0.87778 0.83276 0.75987 0.75572 0.77853 0.86490 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.13 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.79 9.49 30.88 0.29 -10.50 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.83 9.76 0.03 0.00 -4.83 16 10 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 11 C -0.24 -4.91 9.17 -39.40 -0.36 -5.27 16 12 C -0.05 -0.91 9.69 -39.60 -0.38 -1.30 16 13 C -0.21 -3.21 5.12 -104.58 -0.54 -3.75 16 14 C 0.03 0.36 5.97 -29.04 -0.17 0.19 16 15 C 0.20 2.82 7.73 -12.99 -0.10 2.72 16 16 N -0.45 -7.06 11.57 -9.90 -0.11 -7.17 16 17 C 0.20 3.12 7.94 -156.16 -1.24 1.88 16 18 C 0.29 3.97 6.79 -82.64 -0.56 3.41 16 19 C -0.26 -2.84 9.68 -38.76 -0.38 -3.21 16 20 C 0.44 4.30 7.82 -154.79 -1.21 3.09 16 21 N -0.83 -4.63 9.06 31.22 0.28 -4.35 16 22 N -0.58 -6.11 10.46 -13.85 -0.14 -6.25 16 23 C 0.35 3.74 12.27 -92.29 -1.13 2.61 16 24 N -0.52 -7.19 10.40 -11.17 -0.12 -7.31 16 25 N -0.37 -5.37 11.92 30.95 0.37 -5.00 16 26 O 0.09 1.24 11.29 18.03 0.20 1.45 16 27 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 28 C -0.19 -4.02 9.99 -39.40 -0.39 -4.41 16 29 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.15 1.42 7.94 -52.49 -0.42 1.00 16 35 H 0.41 1.71 8.95 -40.82 -0.37 1.34 16 36 H 0.41 1.32 8.84 -40.82 -0.36 0.96 16 37 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -34.20 355.79 -8.71 -42.92 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.38 Total: 5.42 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -6.91 Total: -11.25 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 1.03 Total: -54.20 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: 0.20 Total: -3.38 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.20 -8.71 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820988010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.578 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds