Wall clock time and date at job start Tue Mar 31 2020 22:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48494 * 109.47394 * 240.00392 * 3 2 1 5 5 H 1.48504 * 109.46957 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46766 * 120.00504 * 3 2 1 7 7 C 1.38650 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99839 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99937 * 185.06430 * 9 7 2 11 11 C 1.38872 * 120.06911 * 354.45911 * 10 9 7 12 12 C 1.38101 * 119.93102 * 180.02562 * 11 10 9 13 13 C 1.38311 * 120.06573 * 0.02601 * 12 11 10 14 14 C 1.50694 * 119.92822 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47167 * 90.00078 * 14 13 12 16 16 N 1.30977 * 126.45105 * 89.71029 * 15 14 13 17 17 C 1.35189 * 105.58177 * 179.97438 * 16 15 14 18 18 C 1.48542 * 126.40281 * 180.12861 * 17 16 15 19 19 C 1.39147 * 120.49814 * 179.97438 * 18 17 16 20 20 C 1.39541 * 118.21618 * 179.80492 * 19 18 17 21 21 N 1.38559 * 120.49479 * 180.21732 * 20 19 18 22 22 N 1.32995 * 119.00292 * 0.46734 * 20 19 18 23 23 C 1.31787 * 120.90641 * 359.74757 * 22 20 19 24 24 N 1.31638 * 121.97637 * 0.02562 * 23 22 20 25 25 N 1.30682 * 107.18809 * 0.34536 * 17 16 15 26 26 O 1.21293 * 110.11160 * 359.78433 * 25 17 16 27 27 C 1.38297 * 120.13717 * 0.24849 * 13 12 11 28 28 C 1.38104 * 120.06879 * 359.45329 * 27 13 12 29 29 H 0.97003 * 120.00122 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03873 * 0.04537 * 11 10 9 31 31 H 1.07996 * 119.96953 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.46988 * 209.99753 * 14 13 12 33 33 H 1.08997 * 109.47456 * 329.99602 * 14 13 12 34 34 H 1.08000 * 120.89390 * 0.02562 * 19 18 17 35 35 H 0.97000 * 119.99922 * 180.25670 * 21 20 19 36 36 H 0.96998 * 120.00544 * 0.25575 * 21 20 19 37 37 H 1.08000 * 119.00996 * 179.97438 * 23 22 20 38 38 H 1.08001 * 119.96611 * 179.70697 * 27 13 12 39 39 H 1.08002 * 120.03353 * 180.26931 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6962 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1057 11 6 3.4571 -3.4395 0.0922 12 6 4.2024 -4.5971 0.2000 13 6 3.5686 -5.8205 0.3206 14 6 4.3849 -7.0818 0.4374 15 6 4.6644 -7.3666 1.8906 16 7 3.9204 -8.0770 2.7014 17 6 4.5609 -8.0587 3.8918 18 6 4.1170 -8.7266 5.1421 19 6 4.8763 -8.6270 6.3039 20 6 4.4125 -9.2698 7.4523 21 7 5.1287 -9.1978 8.6362 22 7 3.2753 -9.9568 7.3920 23 6 2.5876 -10.0305 6.2702 24 7 2.9881 -9.4350 5.1666 25 7 5.6413 -7.3397 3.7379 26 8 5.7146 -6.9360 2.5965 27 6 2.1874 -5.8892 0.3286 28 6 1.4366 -4.7345 0.2274 29 1 -0.4850 0.8401 0.0004 30 1 3.9526 -2.4844 -0.0020 31 1 5.2812 -4.5472 0.1892 32 1 3.8310 -7.9146 0.0040 33 1 5.3271 -6.9556 -0.0958 34 1 5.7979 -8.0641 6.3174 35 1 4.8016 -9.6505 9.4292 36 1 5.9573 -8.6947 8.6720 37 1 1.6683 -10.5971 6.2556 38 1 1.6954 -6.8464 0.4182 39 1 0.3580 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820988010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:45 Heat of formation + Delta-G solvation = 98.029375 kcal Electronic energy + Delta-G solvation = -26811.926310 eV Core-core repulsion = 22723.035973 eV Total energy + Delta-G solvation = -4088.890337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.71644 -41.99081 -40.81128 -38.59753 -37.35048 -36.49907 -35.27978 -34.31278 -33.57719 -32.10731 -31.77733 -31.25449 -28.21331 -27.03771 -26.83033 -25.46258 -24.20204 -23.61620 -22.98630 -21.96438 -19.88585 -19.55200 -19.32047 -19.11511 -18.77390 -18.06240 -16.72989 -16.55907 -16.54633 -16.42982 -16.15840 -16.11551 -15.95337 -15.57146 -15.42751 -15.14540 -14.95743 -14.50137 -14.25626 -13.95618 -13.57988 -13.54653 -12.95933 -12.87048 -12.82132 -12.53312 -12.42394 -12.30461 -12.22548 -12.15122 -11.90223 -11.52364 -11.17838 -10.80186 -10.69482 -10.46207 -9.78518 -9.53293 -8.98777 -8.48049 -6.16512 -0.70603 0.06724 0.23290 0.60685 0.62139 1.29860 1.35046 1.45431 1.51391 1.76225 1.99522 2.17370 2.24944 2.66029 2.78685 2.85262 3.15403 3.34364 3.50637 3.57970 3.73367 3.91938 3.96003 4.05405 4.15168 4.20566 4.38864 4.46969 4.52074 4.59689 4.76264 4.80392 4.87502 5.08188 5.14706 5.17031 5.29743 5.55422 5.67698 5.70835 5.73292 6.01916 6.08473 6.19763 6.62441 6.96308 6.96447 7.15677 7.76770 8.74863 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014178 B = 0.002228 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.368749 B =12561.669620 C =13144.383081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.414 4.414 8 H 0.105 0.895 9 O -0.231 6.231 10 C 0.119 3.881 11 C -0.246 4.246 12 C -0.048 4.048 13 C -0.175 4.175 14 C 0.035 3.965 15 C 0.207 3.793 16 N -0.472 5.472 17 C 0.192 3.808 18 C 0.256 3.744 19 C -0.254 4.254 20 C 0.443 3.557 21 N -0.810 5.810 22 N -0.583 5.583 23 C 0.345 3.655 24 N -0.556 5.556 25 N -0.370 5.370 26 O 0.093 5.907 27 C -0.046 4.046 28 C -0.211 4.211 29 H 0.273 0.727 30 H 0.122 0.878 31 H 0.156 0.844 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.420 0.580 36 H 0.426 0.574 37 H 0.233 0.767 38 H 0.146 0.854 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.117 -19.520 11.191 27.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.122 0.878 9 O -0.138 6.138 10 C 0.068 3.932 11 C -0.266 4.266 12 C -0.066 4.066 13 C -0.176 4.176 14 C -0.003 4.003 15 C -0.013 4.013 16 N -0.204 5.204 17 C -0.078 4.078 18 C 0.114 3.886 19 C -0.285 4.285 20 C 0.194 3.806 21 N -0.356 5.356 22 N -0.309 5.309 23 C 0.056 3.944 24 N -0.277 5.277 25 N -0.076 5.076 26 O 0.028 5.972 27 C -0.064 4.064 28 C -0.231 4.231 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.179 0.821 35 H 0.252 0.748 36 H 0.260 0.740 37 H 0.249 0.751 38 H 0.164 0.836 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.111 -19.947 11.909 27.181 hybrid contribution 0.572 1.674 0.211 1.782 sum 14.682 -18.273 12.120 26.389 Atomic orbital electron populations 1.70185 1.08098 1.28907 1.48692 1.26623 0.96846 1.02861 0.95818 0.84648 0.77393 0.74183 0.80014 1.17784 1.19781 1.18296 1.21821 0.92627 0.81342 1.53220 0.87783 1.83949 1.36157 1.12705 1.80962 1.20025 0.91916 0.87842 0.93405 1.21288 0.92824 1.00422 1.12021 1.21117 1.00558 0.90381 0.94564 1.19274 0.93131 0.94100 1.11134 1.19296 1.03726 0.96875 0.80363 1.29585 0.82238 0.89771 0.99677 1.72117 1.27522 1.20821 0.99979 1.23561 0.90433 0.99596 0.94242 1.17987 0.90772 0.91804 0.88064 1.22076 1.05153 1.08717 0.92578 1.18523 0.87844 0.86874 0.87358 1.42167 1.26948 1.57809 1.08652 1.68058 1.08334 1.23736 1.30798 1.25349 0.97727 0.90672 0.80669 1.68288 1.15113 1.12563 1.31713 1.74787 1.20207 1.14195 0.98402 1.85265 1.41850 1.55268 1.14789 1.20943 0.93599 0.96955 0.94949 1.20448 0.99963 0.90723 1.11916 0.91832 0.86001 0.82651 0.84219 0.83298 0.82118 0.74823 0.74025 0.75068 0.83618 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.72 13.67 21.61 0.30 -56.42 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 3 Si 1.02 42.54 29.55 68.60 2.03 44.57 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.41 -23.93 9.49 67.92 0.64 -23.29 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -13.90 9.76 -22.80 -0.22 -14.13 16 10 C 0.12 5.83 6.65 22.57 0.15 5.98 16 11 C -0.25 -10.18 9.17 22.39 0.21 -9.97 16 12 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 13 C -0.17 -4.76 5.12 -19.83 -0.10 -4.86 16 14 C 0.04 0.62 5.97 29.10 0.17 0.80 16 15 C 0.21 4.97 7.73 88.36 0.68 5.65 16 16 N -0.47 -13.86 11.57 -302.64 -3.50 -17.37 16 17 C 0.19 5.62 7.94 137.37 1.09 6.71 16 18 C 0.26 6.89 6.79 41.89 0.28 7.17 16 19 C -0.25 -5.26 9.68 22.80 0.22 -5.04 16 20 C 0.44 7.73 7.82 133.13 1.04 8.77 16 21 N -0.81 -6.90 9.06 -55.13 -0.50 -7.40 16 22 N -0.58 -11.40 10.46 -197.75 -2.07 -13.47 16 23 C 0.34 7.03 12.27 180.93 2.22 9.25 16 24 N -0.56 -14.86 10.40 -189.25 -1.97 -16.83 16 25 N -0.37 -10.15 11.92 -59.27 -0.71 -10.86 16 26 O 0.09 2.31 11.29 74.59 0.84 3.15 16 27 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 28 C -0.21 -8.94 9.99 22.39 0.22 -8.72 16 29 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 31 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.14 1.89 8.08 -2.39 -0.02 1.87 16 33 H 0.15 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.16 2.78 7.94 -2.91 -0.02 2.75 16 35 H 0.42 2.34 8.95 -92.71 -0.83 1.51 16 36 H 0.43 1.53 8.84 -92.71 -0.82 0.71 16 37 H 0.23 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -81.83 355.79 1.44 -80.39 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.49 Total: 19.34 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 7.73 Total: -10.98 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -8.45 Total: -122.34 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.62 Total: -10.98 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -81.83 1.44 -80.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820988010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.418 kcal (2) G-P(sol) polarization free energy of solvation -81.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds