Wall clock time and date at job start Tue Mar 31 2020 22:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86805 * 119.99578 * 2 1 4 4 H 1.48498 * 109.47252 * 239.99894 * 3 2 1 5 5 H 1.48499 * 109.47208 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46722 * 120.00245 * 3 2 1 7 7 C 1.38646 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99605 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00367 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00334 * 185.05620 * 9 7 2 11 11 C 1.38883 * 120.06587 * 354.46462 * 10 9 7 12 12 C 1.38094 * 119.92821 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.07079 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.93360 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46991 * 90.00043 * 14 13 12 16 16 C 1.35728 * 119.50728 * 89.99924 * 15 14 13 17 17 C 1.35450 * 121.09678 * 180.02562 * 16 15 14 18 18 C 1.39901 * 120.08679 * 359.97438 * 17 16 15 19 19 C 1.38574 * 119.03118 * 0.02562 * 18 17 16 20 20 C 1.48232 * 120.52576 * 179.97438 * 19 18 17 21 21 N 1.34122 * 126.68697 * 179.97438 * 20 19 18 22 22 N 1.28985 * 107.26077 * 180.02562 * 21 20 19 23 23 N 1.28728 * 108.96972 * 359.97438 * 22 21 20 24 24 H 0.97006 * 125.33108 * 180.02562 * 23 22 21 25 25 N 1.28875 * 109.33972 * 0.02562 * 23 22 21 26 26 C 1.34654 * 119.51203 * 270.29335 * 15 14 13 27 27 O 1.21979 * 120.07272 * 359.97438 * 26 15 14 28 28 C 1.38302 * 120.13765 * 0.25049 * 13 12 11 29 29 C 1.38098 * 120.06914 * 359.45345 * 28 13 12 30 30 H 0.97000 * 120.00060 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.03600 * 359.97438 * 11 10 9 32 32 H 1.07995 * 119.96803 * 179.97438 * 12 11 10 33 33 H 1.08998 * 109.47238 * 330.00347 * 14 13 12 34 34 H 1.09000 * 109.47718 * 210.00114 * 14 13 12 35 35 H 1.07993 * 119.45383 * 0.02632 * 16 15 14 36 36 H 1.08003 * 119.95799 * 180.02562 * 17 16 15 37 37 H 1.07994 * 120.48914 * 180.02562 * 18 17 16 38 38 H 1.08005 * 119.96836 * 179.70108 * 28 13 12 39 39 H 1.07999 * 120.04356 * 180.27132 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3684 -0.0016 10 6 2.0701 -3.5046 0.1045 11 6 3.4574 -3.4393 0.0921 12 6 4.2026 -4.5970 0.1997 13 6 3.5689 -5.8205 0.3192 14 6 4.3851 -7.0819 0.4359 15 7 4.6557 -7.3595 1.8486 16 6 3.7862 -8.1227 2.5584 17 6 4.0044 -8.3991 3.8663 18 6 5.1410 -7.8968 4.5092 19 6 6.0316 -7.1171 3.7887 20 6 7.2461 -6.5674 4.4369 21 7 8.1858 -5.8033 3.8607 22 7 9.0698 -5.5389 4.7621 23 7 8.7224 -6.1014 5.8666 24 1 9.2177 -6.0558 6.6994 25 7 7.6134 -6.7345 5.6927 26 6 5.7602 -6.8489 2.4253 27 8 6.5278 -6.1610 1.7731 28 6 2.1876 -5.8893 0.3262 29 6 1.4367 -4.7347 0.2250 30 1 -0.4850 0.8400 0.0004 31 1 3.9528 -2.4844 -0.0024 32 1 5.2813 -4.5470 0.1898 33 1 5.3277 -6.9552 -0.0965 34 1 3.8316 -7.9144 0.0016 35 1 2.9058 -8.5161 2.0723 36 1 3.3006 -9.0087 4.4135 37 1 5.3216 -8.1134 5.5516 38 1 1.6955 -6.8467 0.4147 39 1 0.3581 -4.7885 0.2349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822814520.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:26 Heat of formation + Delta-G solvation = 105.036361 kcal Electronic energy + Delta-G solvation = -27765.220732 eV Core-core repulsion = 23676.634241 eV Total energy + Delta-G solvation = -4088.586491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.34462 -42.29385 -40.73831 -38.49586 -37.85721 -36.19463 -35.12622 -34.39673 -33.78510 -31.85014 -31.47641 -30.66256 -27.90487 -26.85713 -26.16953 -25.45219 -23.73361 -23.62315 -23.06310 -22.05551 -20.31440 -19.88516 -18.97938 -18.30319 -18.08017 -18.01975 -17.36876 -17.10733 -16.41518 -16.29911 -16.05874 -15.64830 -15.54072 -15.25227 -15.05823 -14.95669 -14.49529 -14.22685 -13.68301 -13.53617 -13.36565 -13.11791 -13.03772 -12.99774 -12.78945 -12.61634 -12.51985 -12.33667 -12.28280 -12.18145 -12.09573 -12.00796 -11.24149 -10.95933 -10.80544 -10.64857 -9.81276 -9.03477 -8.78508 -8.52792 -6.20686 -0.47350 0.18514 0.51104 0.57847 1.01123 1.29437 1.30576 1.38856 1.45092 1.45826 1.82717 2.13430 2.76055 2.78618 2.87771 3.13509 3.26911 3.47704 3.76985 3.92140 3.97374 4.02614 4.14310 4.15693 4.27841 4.37263 4.52620 4.53340 4.54614 4.67385 4.80077 5.00658 5.03430 5.10393 5.14191 5.24484 5.34488 5.51550 5.68192 5.68721 5.69483 5.72594 5.98214 6.16151 6.17754 6.92240 7.09989 7.24029 7.70404 8.69497 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.002988 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.709070 B = 9369.537569 C =10923.520128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.016 4.016 3 Si 1.012 2.988 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.418 4.418 8 H 0.092 0.908 9 O -0.225 6.225 10 C 0.122 3.878 11 C -0.255 4.255 12 C -0.051 4.051 13 C -0.192 4.192 14 C 0.150 3.850 15 N -0.486 5.486 16 C 0.175 3.825 17 C -0.241 4.241 18 C 0.061 3.939 19 C -0.214 4.214 20 C 0.233 3.767 21 N -0.293 5.293 22 N -0.074 5.074 23 N -0.204 5.204 24 H 0.492 0.508 25 N -0.299 5.299 26 C 0.512 3.488 27 O -0.566 6.566 28 C -0.033 4.033 29 C -0.203 4.203 30 H 0.275 0.725 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.220 0.780 36 H 0.197 0.803 37 H 0.162 0.838 38 H 0.181 0.819 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 -23.554 11.596 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.214 4.214 3 Si 0.831 3.169 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.110 0.890 9 O -0.131 6.131 10 C 0.071 3.929 11 C -0.275 4.275 12 C -0.070 4.070 13 C -0.193 4.193 14 C 0.030 3.970 15 N -0.193 5.193 16 C 0.045 3.955 17 C -0.263 4.263 18 C 0.035 3.965 19 C -0.222 4.222 20 C -0.046 4.046 21 N -0.164 5.164 22 N -0.069 5.069 23 N -0.054 5.054 24 H 0.351 0.649 25 N -0.153 5.153 26 C 0.313 3.687 27 O -0.448 6.448 28 C -0.051 4.051 29 C -0.222 4.222 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.173 0.827 35 H 0.237 0.763 36 H 0.214 0.786 37 H 0.179 0.821 38 H 0.198 0.802 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.085 -22.546 11.079 26.713 hybrid contribution 0.618 1.550 0.419 1.721 sum 9.704 -20.995 11.498 25.830 Atomic orbital electron populations 1.70143 1.07704 1.28992 1.48303 1.26469 0.96858 1.02384 0.95683 0.84747 0.77573 0.74816 0.79725 1.18330 1.18797 1.18822 1.21686 0.92226 0.81726 1.53733 0.89028 1.83924 1.35712 1.12504 1.80986 1.20062 0.90973 0.88555 0.93260 1.21178 0.93754 0.99478 1.13078 1.20934 0.98899 0.92229 0.94915 1.19761 0.94284 0.94118 1.11151 1.20899 1.01003 0.96305 0.78777 1.45827 1.19764 1.40527 1.13137 1.23208 0.92825 0.86163 0.93307 1.21123 1.01107 1.09845 0.94250 1.22183 0.89175 0.84687 1.00408 1.18136 0.96947 1.13029 0.94043 1.23296 0.96936 0.97316 0.87068 1.76444 1.01676 1.15416 1.22914 1.78892 1.21061 1.16277 0.90670 1.47725 1.14299 1.29833 1.13587 0.64877 1.74793 1.02240 1.20094 1.18163 1.16966 0.81880 0.81671 0.88211 1.90982 1.48199 1.40323 1.65302 1.21069 0.91839 0.97940 0.94267 1.20583 1.00516 0.90027 1.11066 0.91600 0.87819 0.87206 0.89414 0.82651 0.76321 0.78552 0.82057 0.80189 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.28 13.67 21.61 0.30 -55.98 16 2 C -0.02 -0.90 5.49 84.83 0.47 -0.44 16 3 Si 1.01 44.59 29.55 68.60 2.03 46.61 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.42 -25.22 9.49 67.92 0.64 -24.57 16 8 H 0.09 5.28 5.20 -2.91 -0.02 5.27 16 9 O -0.23 -13.66 9.76 -22.76 -0.22 -13.88 16 10 C 0.12 6.11 6.65 22.58 0.15 6.26 16 11 C -0.26 -12.12 9.17 22.39 0.21 -11.92 16 12 C -0.05 -2.01 9.67 22.25 0.22 -1.79 16 13 C -0.19 -5.54 5.46 -19.83 -0.11 -5.65 16 14 C 0.15 2.93 5.44 85.63 0.47 3.40 16 15 N -0.49 -9.76 2.57 -654.03 -1.68 -11.44 16 16 C 0.17 1.67 10.26 83.45 0.86 2.52 16 17 C -0.24 -2.02 9.99 22.03 0.22 -1.80 16 18 C 0.06 0.94 9.80 22.75 0.22 1.16 16 19 C -0.21 -5.63 5.92 -19.71 -0.12 -5.74 16 20 C 0.23 6.95 7.91 137.26 1.09 8.04 16 21 N -0.29 -10.36 11.27 -52.26 -0.59 -10.95 16 22 N -0.07 -2.07 13.47 37.02 0.50 -1.57 16 23 N -0.20 -3.87 7.90 37.02 0.29 -3.57 16 24 H 0.49 3.67 8.96 -347.51 -3.12 0.56 16 25 N -0.30 -6.82 12.13 -52.21 -0.63 -7.45 16 26 C 0.51 15.40 7.43 85.09 0.63 16.03 16 27 O -0.57 -22.44 14.56 -5.25 -0.08 -22.51 16 28 C -0.03 -0.88 9.69 22.25 0.22 -0.66 16 29 C -0.20 -7.82 9.99 22.39 0.22 -7.59 16 30 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.10 5.26 5.64 -2.91 -0.02 5.25 16 32 H 0.11 4.48 7.47 -2.91 -0.02 4.45 16 33 H 0.09 2.10 7.33 -2.39 -0.02 2.08 16 34 H 0.16 1.24 7.94 -2.39 -0.02 1.22 16 35 H 0.22 -0.29 8.02 -2.91 -0.02 -0.32 16 36 H 0.20 -0.04 8.06 -2.91 -0.02 -0.07 16 37 H 0.16 1.75 7.92 -2.91 -0.02 1.73 16 38 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 39 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -95.79 349.53 3.32 -92.47 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -1.97 Total: 11.03 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 5.38 Total: -22.75 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -1.81 Total: -90.97 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.30 Total: -36.39 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -95.79 3.32 -92.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822814520.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.502 kcal (2) G-P(sol) polarization free energy of solvation -95.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds