Wall clock time and date at job start Tue Mar 31 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86791 * 120.00472 * 2 1 4 4 H 1.48506 * 109.46990 * 274.65998 * 3 2 1 5 5 H 1.48497 * 109.47151 * 34.66294 * 3 2 1 6 6 H 1.48498 * 109.47298 * 154.66268 * 3 2 1 7 7 C 1.39950 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00156 * 162.23537 * 7 2 1 9 9 C 1.41393 * 120.00195 * 342.22901 * 7 2 1 10 10 C 1.40721 * 120.24354 * 155.28829 * 9 7 2 11 11 C 1.37621 * 119.74454 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24706 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.74781 * 179.97438 * 12 11 10 14 14 O 1.45200 * 109.47229 * 90.00326 * 13 12 11 15 15 C 1.34776 * 117.00218 * 180.02562 * 14 13 12 16 16 O 1.21555 * 119.99708 * 359.97438 * 15 14 13 17 17 C 1.47151 * 120.00166 * 179.97438 * 15 14 13 18 18 C 1.37912 * 126.53853 * 0.02562 * 17 15 14 19 19 N 1.34733 * 108.24550 * 179.97438 * 18 17 15 20 20 H 0.97005 * 125.35660 * 179.73402 * 19 18 17 21 21 C 1.37329 * 109.28867 * 0.02562 * 19 18 17 22 22 C 1.48008 * 125.75132 * 179.97438 * 21 19 18 23 23 N 1.34175 * 126.69413 * 179.71121 * 22 21 19 24 24 N 1.28986 * 107.25136 * 179.83824 * 23 22 21 25 25 N 1.28721 * 108.98529 * 0.43360 * 24 23 22 26 26 H 0.97001 * 125.32078 * 179.76749 * 25 24 23 27 27 N 1.28866 * 109.35883 * 359.72147 * 25 24 23 28 28 C 1.35674 * 108.49178 * 359.97438 * 21 19 18 29 29 C 1.38634 * 120.50421 * 0.25516 * 12 11 10 30 30 C 1.37623 * 120.24610 * 359.44685 * 29 12 11 31 31 H 0.97007 * 119.99332 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.12742 * 0.02562 * 10 9 7 33 33 H 1.07997 * 119.87609 * 180.02562 * 11 10 9 34 34 H 1.08995 * 109.46939 * 330.00265 * 13 12 11 35 35 H 1.09000 * 109.47108 * 210.00176 * 13 12 11 36 36 H 1.08000 * 125.87814 * 359.97438 * 18 17 15 37 37 H 1.07999 * 126.47325 * 179.97438 * 28 21 19 38 38 H 1.07997 * 119.87873 * 179.70041 * 29 12 11 39 39 H 1.08004 * 120.12781 * 180.27428 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3913 2.1031 -1.3955 5 1 1.4926 2.6221 0.7963 6 1 3.5857 1.4135 0.5991 7 6 2.0079 -1.2121 0.0005 8 1 3.0493 -1.2346 -0.2848 9 6 1.3514 -2.4071 0.3748 10 6 1.8216 -3.6495 -0.0898 11 6 1.1745 -4.8062 0.2805 12 6 0.0632 -4.7507 1.1074 13 6 -0.6371 -6.0244 1.5054 14 8 -0.0505 -6.5368 2.7308 15 6 -0.5664 -7.6796 3.2250 16 8 -1.4820 -8.2327 2.6476 17 6 -0.0212 -8.2579 4.4634 18 6 1.0094 -7.7468 5.2241 19 7 1.2057 -8.5674 6.2744 20 1 1.8744 -8.4437 6.9662 21 6 0.3145 -9.6102 6.2082 22 6 0.2118 -10.7230 7.1786 23 7 -0.6539 -11.7472 7.1354 24 7 -0.4127 -12.4954 8.1580 25 7 0.5527 -11.9798 8.8357 26 1 0.9235 -12.3481 9.6529 27 7 0.9501 -10.8985 8.2583 28 6 -0.4560 -9.4482 5.1032 29 6 -0.4122 -3.5320 1.5664 30 6 0.2228 -2.3630 1.2139 31 1 -0.4849 0.8402 -0.0004 32 1 2.6869 -3.6949 -0.7345 33 1 1.5337 -5.7608 -0.0745 34 1 -0.5252 -6.7636 0.7123 35 1 -1.6959 -5.8218 1.6665 36 1 1.5637 -6.8440 5.0139 37 1 -1.2496 -10.1017 4.7725 38 1 -1.2816 -3.5001 2.2063 39 1 -0.1466 -1.4149 1.5762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826382546.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:15 Heat of formation + Delta-G solvation = 99.297562 kcal Electronic energy + Delta-G solvation = -26299.883277 eV Core-core repulsion = 22211.047933 eV Total energy + Delta-G solvation = -4088.835344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.85563 -41.60341 -39.53008 -37.60800 -35.81634 -34.79207 -33.85223 -33.76101 -31.73539 -30.76273 -29.64062 -29.33477 -27.18120 -25.02047 -24.66103 -23.94528 -22.95526 -21.12439 -21.05589 -20.03146 -19.77484 -19.65905 -18.37005 -17.57128 -17.37415 -16.86710 -15.88275 -15.78581 -15.28566 -14.94426 -14.66597 -14.38111 -14.21811 -13.84679 -13.60909 -13.59520 -12.80219 -12.71187 -12.63336 -12.27565 -12.24820 -12.00159 -11.80593 -11.56815 -11.52962 -11.41135 -11.22982 -11.10813 -10.62543 -10.59122 -10.19595 -10.04421 -9.66460 -9.44946 -9.36213 -9.19712 -8.49062 -7.53857 -7.43345 -6.85664 -4.44678 0.53227 1.06099 1.54457 1.78429 2.44934 2.51353 2.53974 2.96732 3.01948 3.03724 3.08198 3.28398 3.42862 3.63318 3.86496 3.94005 4.55099 4.76812 4.82228 4.91983 5.03559 5.21447 5.58849 5.67338 5.76243 5.78795 5.80993 5.92219 6.16352 6.29109 6.31728 6.35350 6.41762 6.88806 6.93183 6.97508 6.99581 7.20756 7.28682 7.53880 7.72062 7.76711 7.97600 8.03903 8.21314 8.25840 8.55713 8.80333 8.88726 10.08526 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.001765 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.265228 B =15861.162403 C =16463.420777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.064 4.064 12 C -0.233 4.233 13 C 0.138 3.862 14 O -0.350 6.350 15 C 0.531 3.469 16 O -0.521 6.521 17 C -0.213 4.213 18 C 0.108 3.892 19 N -0.526 5.526 20 H 0.427 0.573 21 C 0.050 3.950 22 C 0.256 3.744 23 N -0.257 5.257 24 N -0.044 5.044 25 N -0.226 5.226 26 H 0.476 0.524 27 N -0.310 5.310 28 C -0.055 4.055 29 C -0.075 4.075 30 C -0.171 4.171 31 H 0.282 0.718 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.197 0.803 37 H 0.162 0.838 38 H 0.089 0.911 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 -16.035 16.867 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.250 4.250 11 C -0.082 4.082 12 C -0.234 4.234 13 C 0.066 3.934 14 O -0.267 6.267 15 C 0.376 3.624 16 O -0.412 6.412 17 C -0.220 4.220 18 C -0.034 4.034 19 N -0.120 5.120 20 H 0.265 0.735 21 C -0.062 4.062 22 C -0.024 4.024 23 N -0.130 5.130 24 N -0.039 5.039 25 N -0.072 5.072 26 H 0.330 0.670 27 N -0.162 5.162 28 C -0.083 4.083 29 C -0.094 4.094 30 C -0.190 4.190 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.214 0.786 37 H 0.180 0.820 38 H 0.107 0.893 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.576 -16.587 17.032 23.913 hybrid contribution 0.980 0.999 0.569 1.511 sum 3.556 -15.588 17.601 23.778 Atomic orbital electron populations 1.69829 1.07662 1.29457 1.34155 1.25961 0.94749 1.01489 0.92126 0.86293 0.80770 0.80528 0.79147 1.19487 1.19957 1.18350 1.19658 0.98199 0.91264 1.39516 0.90235 1.17687 0.90821 0.92074 0.87891 1.20951 1.03966 0.92809 1.07264 1.20399 0.94350 0.96612 0.96880 1.18686 1.03165 0.91558 1.10010 1.21695 0.95998 0.93682 0.82064 1.86725 1.59925 1.37513 1.42513 1.20106 0.80015 0.79060 0.83245 1.90815 1.28771 1.61569 1.60020 1.18837 1.04076 1.00397 0.98717 1.22780 0.97959 0.95986 0.86675 1.41595 1.28856 1.18961 1.22579 0.73500 1.16307 1.00539 0.91178 0.98141 1.22472 0.92008 0.95556 0.92358 1.76197 1.20953 1.02675 1.13185 1.78966 1.04148 1.20132 1.00661 1.47628 1.22797 1.14379 1.22397 0.66957 1.74947 1.25269 1.05849 1.10134 1.20980 0.99091 0.96239 0.91959 1.20552 0.98079 0.92541 0.98217 1.21292 0.99438 0.96743 1.01530 0.90676 0.88777 0.89241 0.92038 0.91957 0.78584 0.82048 0.89257 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.71 10.97 55.55 0.61 -19.10 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 9 C 0.12 3.05 5.57 -106.82 -0.60 2.46 16 10 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 11 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 12 C -0.23 -5.05 5.54 -104.33 -0.58 -5.63 16 13 C 0.14 2.61 5.59 36.01 0.20 2.81 16 14 O -0.35 -6.22 10.04 -40.70 -0.41 -6.63 16 15 C 0.53 8.82 7.95 34.35 0.27 9.09 16 16 O -0.52 -9.95 16.72 -19.31 -0.32 -10.28 16 17 C -0.21 -2.78 6.14 -104.98 -0.64 -3.42 16 18 C 0.11 1.03 11.76 -16.40 -0.19 0.84 16 19 N -0.53 -4.17 6.01 -9.18 -0.06 -4.22 16 20 H 0.43 2.11 8.96 -40.82 -0.37 1.74 16 21 C 0.05 0.51 7.08 -82.32 -0.58 -0.07 16 22 C 0.26 2.57 8.20 -156.26 -1.28 1.29 16 23 N -0.26 -2.82 12.52 32.10 0.40 -2.42 16 24 N -0.04 -0.38 13.47 60.35 0.81 0.43 16 25 N -0.23 -1.27 7.90 60.35 0.48 -0.79 16 26 H 0.48 0.32 8.96 -340.34 -3.05 -2.74 16 27 N -0.31 -2.43 12.41 32.11 0.40 -2.04 16 28 C -0.06 -0.67 10.59 -39.08 -0.41 -1.08 16 29 C -0.08 -1.72 9.67 -39.66 -0.38 -2.11 16 30 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 31 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 32 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.06 1.15 8.07 -51.93 -0.42 0.74 16 36 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.12 3.08 6.18 -52.48 -0.32 2.75 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -32.12 358.13 -9.70 -41.82 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.24 Total: 3.36 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -5.73 Total: -18.46 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 2.64 Total: -28.14 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.73 Total: -16.90 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.12 -9.70 -41.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382546.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.117 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds