Wall clock time and date at job start Tue Mar 31 2020 22:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86791 * 120.00472 * 2 1 4 4 H 1.48506 * 109.46990 * 274.65998 * 3 2 1 5 5 H 1.48497 * 109.47151 * 34.66294 * 3 2 1 6 6 H 1.48498 * 109.47298 * 154.66268 * 3 2 1 7 7 C 1.39950 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00156 * 162.23537 * 7 2 1 9 9 C 1.41393 * 120.00195 * 342.22901 * 7 2 1 10 10 C 1.40721 * 120.24354 * 155.28829 * 9 7 2 11 11 C 1.37621 * 119.74454 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24706 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.74781 * 179.97438 * 12 11 10 14 14 O 1.45200 * 109.47229 * 90.00326 * 13 12 11 15 15 C 1.34776 * 117.00218 * 180.02562 * 14 13 12 16 16 O 1.21555 * 119.99708 * 359.97438 * 15 14 13 17 17 C 1.47151 * 120.00166 * 179.97438 * 15 14 13 18 18 C 1.37912 * 126.53853 * 0.02562 * 17 15 14 19 19 N 1.34733 * 108.24550 * 179.97438 * 18 17 15 20 20 H 0.97005 * 125.35660 * 179.73402 * 19 18 17 21 21 C 1.37329 * 109.28867 * 0.02562 * 19 18 17 22 22 C 1.48008 * 125.75132 * 179.97438 * 21 19 18 23 23 N 1.34175 * 126.69413 * 179.71121 * 22 21 19 24 24 N 1.28986 * 107.25136 * 179.83824 * 23 22 21 25 25 N 1.28721 * 108.98529 * 0.43360 * 24 23 22 26 26 H 0.97001 * 125.32078 * 179.76749 * 25 24 23 27 27 N 1.28866 * 109.35883 * 359.72147 * 25 24 23 28 28 C 1.35674 * 108.49178 * 359.97438 * 21 19 18 29 29 C 1.38634 * 120.50421 * 0.25516 * 12 11 10 30 30 C 1.37623 * 120.24610 * 359.44685 * 29 12 11 31 31 H 0.97007 * 119.99332 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.12742 * 0.02562 * 10 9 7 33 33 H 1.07997 * 119.87609 * 180.02562 * 11 10 9 34 34 H 1.08995 * 109.46939 * 330.00265 * 13 12 11 35 35 H 1.09000 * 109.47108 * 210.00176 * 13 12 11 36 36 H 1.08000 * 125.87814 * 359.97438 * 18 17 15 37 37 H 1.07999 * 126.47325 * 179.97438 * 28 21 19 38 38 H 1.07997 * 119.87873 * 179.70041 * 29 12 11 39 39 H 1.08004 * 120.12781 * 180.27428 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3913 2.1031 -1.3955 5 1 1.4926 2.6221 0.7963 6 1 3.5857 1.4135 0.5991 7 6 2.0079 -1.2121 0.0005 8 1 3.0493 -1.2346 -0.2848 9 6 1.3514 -2.4071 0.3748 10 6 1.8216 -3.6495 -0.0898 11 6 1.1745 -4.8062 0.2805 12 6 0.0632 -4.7507 1.1074 13 6 -0.6371 -6.0244 1.5054 14 8 -0.0505 -6.5368 2.7308 15 6 -0.5664 -7.6796 3.2250 16 8 -1.4820 -8.2327 2.6476 17 6 -0.0212 -8.2579 4.4634 18 6 1.0094 -7.7468 5.2241 19 7 1.2057 -8.5674 6.2744 20 1 1.8744 -8.4437 6.9662 21 6 0.3145 -9.6102 6.2082 22 6 0.2118 -10.7230 7.1786 23 7 -0.6539 -11.7472 7.1354 24 7 -0.4127 -12.4954 8.1580 25 7 0.5527 -11.9798 8.8357 26 1 0.9235 -12.3481 9.6529 27 7 0.9501 -10.8985 8.2583 28 6 -0.4560 -9.4482 5.1032 29 6 -0.4122 -3.5320 1.5664 30 6 0.2228 -2.3630 1.2139 31 1 -0.4849 0.8402 -0.0004 32 1 2.6869 -3.6949 -0.7345 33 1 1.5337 -5.7608 -0.0745 34 1 -0.5252 -6.7636 0.7123 35 1 -1.6959 -5.8218 1.6665 36 1 1.5637 -6.8440 5.0139 37 1 -1.2496 -10.1017 4.7725 38 1 -1.2816 -3.5001 2.2063 39 1 -0.1466 -1.4149 1.5762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826382546.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:14 Heat of formation + Delta-G solvation = 79.798458 kcal Electronic energy + Delta-G solvation = -26300.728821 eV Core-core repulsion = 22211.047933 eV Total energy + Delta-G solvation = -4089.680889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.52015 -42.46182 -40.88280 -39.38079 -37.26496 -35.63029 -35.46748 -34.47209 -32.78847 -32.32729 -31.18073 -30.51615 -28.84713 -26.02970 -25.63850 -25.00545 -24.18799 -22.89530 -21.95357 -21.75655 -20.87138 -20.35331 -19.22721 -19.15612 -18.22615 -18.15517 -17.36785 -17.16378 -16.85858 -15.87733 -15.68665 -15.63019 -15.46523 -15.19759 -15.06920 -14.57069 -14.31656 -13.99607 -13.83752 -13.77413 -13.45490 -13.37113 -13.18710 -12.98525 -12.74639 -12.48864 -12.35998 -12.26489 -12.18650 -12.08984 -11.64233 -11.57437 -11.38498 -11.23328 -10.99671 -10.25320 -9.38552 -9.30850 -9.28722 -8.65758 -6.35528 -0.12686 0.31683 0.50925 0.78515 1.16261 1.31584 1.40731 1.45799 1.55958 1.68839 1.77034 2.05147 2.21989 2.30080 2.68617 2.81770 3.24969 3.72643 3.85663 4.04191 4.16684 4.18549 4.19699 4.24785 4.35522 4.52154 4.54818 4.61843 4.79327 4.94761 5.05727 5.15888 5.35510 5.37395 5.44103 5.53681 5.58911 5.61870 5.70058 5.93892 6.09990 6.20392 6.30437 6.36594 6.68761 6.92632 6.94054 7.01846 7.04478 8.31226 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025489 B = 0.001765 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.265228 B =15861.162403 C =16463.420777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.494 4.494 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.243 4.243 11 C -0.064 4.064 12 C -0.225 4.225 13 C 0.143 3.857 14 O -0.351 6.351 15 C 0.532 3.468 16 O -0.554 6.554 17 C -0.247 4.247 18 C 0.137 3.863 19 N -0.504 5.504 20 H 0.444 0.556 21 C 0.058 3.942 22 C 0.241 3.759 23 N -0.288 5.288 24 N -0.051 5.051 25 N -0.195 5.195 26 H 0.496 0.504 27 N -0.297 5.297 28 C -0.072 4.072 29 C -0.079 4.079 30 C -0.193 4.193 31 H 0.290 0.710 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.222 0.778 37 H 0.151 0.849 38 H 0.106 0.894 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.713 -16.604 18.740 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.084 3.916 10 C -0.263 4.263 11 C -0.082 4.082 12 C -0.226 4.226 13 C 0.070 3.930 14 O -0.268 6.268 15 C 0.380 3.620 16 O -0.447 6.447 17 C -0.254 4.254 18 C -0.007 4.007 19 N -0.099 5.099 20 H 0.287 0.713 21 C -0.054 4.054 22 C -0.039 4.039 23 N -0.161 5.161 24 N -0.046 5.046 25 N -0.046 5.046 26 H 0.356 0.644 27 N -0.150 5.150 28 C -0.099 4.099 29 C -0.098 4.098 30 C -0.212 4.212 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.239 0.761 37 H 0.169 0.831 38 H 0.124 0.876 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.080 -17.197 18.952 25.914 hybrid contribution 0.517 0.953 0.148 1.094 sum 4.596 -16.244 19.100 25.491 Atomic orbital electron populations 1.69879 1.09098 1.30775 1.34776 1.26805 0.95479 1.04656 0.91097 0.85183 0.79258 0.75859 0.79382 1.18781 1.19068 1.18069 1.19909 0.98499 0.92417 1.41420 0.90254 1.18045 0.91603 0.93202 0.88702 1.21155 1.04602 0.92907 1.07627 1.20704 0.94011 0.97243 0.96291 1.18956 1.02547 0.92273 1.08824 1.21506 0.95740 0.92703 0.83054 1.86680 1.59937 1.38318 1.41880 1.20601 0.79428 0.78143 0.83805 1.90794 1.30389 1.62279 1.61249 1.18670 1.06479 1.01706 0.98558 1.23023 0.96144 0.95899 0.85621 1.41554 1.28327 1.17681 1.22368 0.71343 1.16210 1.00192 0.91507 0.97473 1.22434 0.92663 0.95691 0.93103 1.76188 1.22061 1.03479 1.14358 1.78923 1.04927 1.20088 1.00656 1.47723 1.21362 1.13217 1.22303 0.64410 1.74913 1.24580 1.06188 1.09362 1.20923 0.99741 0.96270 0.92954 1.20771 0.98383 0.92395 0.98207 1.21254 1.00317 0.96962 1.02674 0.89954 0.87968 0.86390 0.91161 0.91702 0.76128 0.83111 0.87586 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.03 10.97 21.83 0.24 -41.79 16 2 C 0.04 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 36.96 29.59 68.60 2.03 38.99 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.49 -25.96 9.05 23.46 0.21 -25.75 16 8 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 9 C 0.09 4.61 5.57 -21.29 -0.12 4.49 16 10 C -0.24 -11.67 9.80 22.73 0.22 -11.45 16 11 C -0.06 -2.76 9.67 22.22 0.21 -2.55 16 12 C -0.22 -9.56 5.54 -19.67 -0.11 -9.66 16 13 C 0.14 5.24 5.59 71.24 0.40 5.64 16 14 O -0.35 -12.05 10.04 -56.87 -0.57 -12.62 16 15 C 0.53 17.44 7.95 70.16 0.56 18.00 16 16 O -0.55 -21.34 16.72 19.66 0.33 -21.01 16 17 C -0.25 -6.19 6.14 -20.09 -0.12 -6.31 16 18 C 0.14 2.27 11.76 84.17 0.99 3.26 16 19 N -0.50 -6.59 6.01 -182.96 -1.10 -7.68 16 20 H 0.44 2.80 8.96 -92.70 -0.83 1.97 16 21 C 0.06 1.10 7.08 40.28 0.29 1.38 16 22 C 0.24 4.45 8.20 137.16 1.13 5.58 16 23 N -0.29 -6.08 12.52 -52.37 -0.66 -6.74 16 24 N -0.05 -0.80 13.47 37.02 0.50 -0.31 16 25 N -0.19 -1.71 7.90 37.02 0.29 -1.41 16 26 H 0.50 -0.80 8.96 -347.51 -3.12 -3.92 16 27 N -0.30 -3.90 12.41 -52.32 -0.65 -4.55 16 28 C -0.07 -1.71 10.59 22.60 0.24 -1.47 16 29 C -0.08 -3.63 9.67 22.22 0.21 -3.42 16 30 C -0.19 -9.97 8.70 22.73 0.20 -9.78 16 31 H 0.29 13.37 8.30 -92.70 -0.77 12.60 16 32 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 34 H 0.07 2.47 8.08 -2.39 -0.02 2.45 16 35 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 36 H 0.22 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.10 5.56 6.18 -2.91 -0.02 5.54 16 Total: -1.00 -71.25 358.13 2.37 -68.88 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -2.79 Total: 18.10 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 4.75 Total: -29.86 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -1.37 Total: -62.48 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.24 Total: -33.63 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -71.25 2.37 -68.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382546.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.677 kcal (2) G-P(sol) polarization free energy of solvation -71.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds