Wall clock time and date at job start Tue Mar 31 2020 22:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00258 * 2 1 4 4 H 1.48497 * 109.47182 * 270.00711 * 3 2 1 5 5 H 1.48501 * 109.46915 * 30.00545 * 3 2 1 6 6 H 1.48494 * 109.46922 * 150.00389 * 3 2 1 7 7 C 1.37882 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99622 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00162 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.88778 * 62.42954 * 9 7 2 11 11 C 1.55162 * 111.03525 * 186.33563 * 9 7 2 12 12 C 1.54340 * 103.01870 * 153.39559 * 11 9 7 13 13 N 1.47016 * 107.26567 * 338.13735 * 12 11 9 14 14 C 1.34780 * 125.64687 * 178.85158 * 13 12 11 15 15 O 1.21583 * 119.99709 * 179.69293 * 14 13 12 16 16 N 1.34777 * 119.99854 * 359.69284 * 14 13 12 17 17 C 1.46505 * 119.99601 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46503 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.46612 * 179.97438 * 18 17 16 20 20 C 1.38711 * 120.40615 * 269.98025 * 19 18 17 21 21 C 1.38568 * 118.43748 * 179.75572 * 20 19 18 22 22 C 1.38397 * 119.14747 * 0.53020 * 21 20 19 23 23 Cl 1.73599 * 119.63613 * 179.73521 * 22 21 20 24 24 N 1.31950 * 120.73033 * 359.45465 * 22 21 20 25 25 C 1.31905 * 121.70652 * 0.27873 * 24 22 21 26 26 C 1.47425 * 108.70645 * 358.58685 * 13 12 11 27 27 H 0.97000 * 119.99956 * 359.97438 * 1 2 3 28 28 H 0.96692 * 113.99829 * 297.57117 * 10 9 7 29 29 H 1.08997 * 110.72089 * 271.94917 * 11 9 7 30 30 H 1.08991 * 110.72312 * 35.22657 * 11 9 7 31 31 H 1.09005 * 109.98488 * 218.66124 * 12 11 9 32 32 H 1.08996 * 109.77944 * 97.49572 * 12 11 9 33 33 H 0.96998 * 120.00098 * 359.97438 * 16 14 13 34 34 H 1.09003 * 109.47178 * 60.00262 * 17 16 14 35 35 H 1.08998 * 109.46748 * 299.99717 * 17 16 14 36 36 H 1.09003 * 109.47050 * 60.00354 * 18 17 16 37 37 H 1.08998 * 109.47527 * 299.99410 * 18 17 16 38 38 H 1.08002 * 120.77671 * 0.04211 * 20 19 18 39 39 H 1.07990 * 120.42443 * 180.26472 * 21 20 19 40 40 H 1.08005 * 119.60793 * 179.97438 * 25 24 22 41 41 H 1.08996 * 110.36940 * 143.18792 * 26 13 12 42 42 H 1.08993 * 110.36691 * 265.41155 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4606 -2.6311 -1.1837 11 6 2.2191 -3.7012 0.1586 12 6 1.3290 -4.7805 0.8106 13 7 0.2064 -4.0871 1.4588 14 6 -0.8065 -4.6806 2.1210 15 8 -1.6823 -4.0042 2.6247 16 7 -0.8485 -6.0237 2.2246 17 6 -1.9498 -6.6688 2.9439 18 6 -1.7592 -8.1866 2.9129 19 6 -2.8918 -8.8501 3.6533 20 6 -2.7895 -9.1013 5.0136 21 6 -3.8573 -9.7087 5.6546 22 6 -4.9781 -10.0523 4.9191 23 17 -6.3205 -10.8201 5.7079 24 7 -5.0400 -9.7977 3.6258 25 6 -4.0443 -9.2161 2.9853 26 6 0.3753 -2.6347 1.2702 27 1 -0.4850 0.8400 0.0004 28 1 -0.2253 -1.9559 -1.2758 29 1 2.5836 -4.0342 -0.8131 30 1 3.0496 -3.4432 0.8155 31 1 1.9009 -5.3358 1.5541 32 1 0.9531 -5.4600 0.0457 33 1 -0.1499 -6.5632 1.8224 34 1 -2.8954 -6.4118 2.4665 35 1 -1.9593 -6.3244 3.9780 36 1 -0.8135 -8.4438 3.3900 37 1 -1.7499 -8.5306 1.8787 38 1 -1.9003 -8.8256 5.5612 39 1 -3.8137 -9.9153 6.7137 40 1 -4.1310 -9.0241 1.9260 41 1 -0.5923 -2.1570 1.1167 42 1 0.8817 -2.1969 2.1303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826698607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:44 Heat of formation + Delta-G solvation = -51.939042 kcal Electronic energy + Delta-G solvation = -26133.861322 eV Core-core repulsion = 22139.575360 eV Total energy + Delta-G solvation = -3994.285961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76062 -39.66163 -37.54112 -37.06652 -35.57806 -34.24415 -33.31859 -32.33900 -32.23376 -30.21960 -28.72855 -27.69056 -25.26817 -24.24759 -23.99372 -22.50340 -21.83019 -19.69229 -19.53739 -17.86122 -17.57927 -17.24976 -17.03112 -16.12701 -15.51887 -15.42592 -15.01667 -14.85128 -14.55100 -14.38970 -14.25882 -14.01322 -13.66919 -13.23375 -13.04522 -12.80708 -12.59197 -12.30367 -12.08671 -11.82500 -11.76679 -11.65432 -11.61279 -11.36534 -11.04198 -10.84112 -10.62440 -10.47644 -10.35455 -10.20636 -10.02902 -9.66700 -9.37755 -9.25272 -8.90573 -8.70124 -8.36745 -7.71497 -6.27854 -4.37810 0.44311 0.72212 1.42757 3.00354 3.20078 3.23174 3.28507 3.30492 3.71263 4.02272 4.20327 4.27089 4.36177 4.42998 4.50109 4.64748 4.76131 4.91292 4.99162 5.18338 5.25925 5.38076 5.42394 5.55591 5.61981 5.70901 5.81463 5.85032 5.98664 6.04263 6.09628 6.49054 6.67301 6.68766 6.86953 6.93822 7.21957 7.28013 7.31459 7.60819 7.74058 8.02781 8.50052 8.66422 9.09487 9.29532 9.37798 10.79138 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030586 B = 0.001811 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.235444 B =15458.282757 C =15790.268419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.628 5.628 14 C 0.716 3.284 15 O -0.596 6.596 16 N -0.753 5.753 17 C 0.146 3.854 18 C -0.088 4.088 19 C -0.125 4.125 20 C -0.056 4.056 21 C -0.152 4.152 22 C 0.170 3.830 23 Cl -0.034 7.034 24 N -0.476 5.476 25 C 0.126 3.874 26 C 0.114 3.886 27 H 0.270 0.730 28 H 0.381 0.619 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.393 0.607 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.168 0.832 41 H 0.085 0.915 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 -20.872 8.919 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.365 5.365 14 C 0.418 3.582 15 O -0.475 6.475 16 N -0.411 5.411 17 C 0.021 3.979 18 C -0.127 4.127 19 C -0.127 4.127 20 C -0.082 4.082 21 C -0.172 4.172 22 C 0.005 3.995 23 Cl -0.006 7.006 24 N -0.187 5.187 25 C -0.031 4.031 26 C -0.008 4.008 27 H 0.080 0.920 28 H 0.231 0.769 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.185 0.815 41 H 0.103 0.897 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.879 -21.080 8.864 23.383 hybrid contribution 0.933 1.241 0.512 1.635 sum -3.946 -19.839 9.376 22.295 Atomic orbital electron populations 1.69719 1.05971 1.27919 1.49361 1.25088 0.95042 0.99764 0.93367 0.86406 0.79755 0.82476 0.78281 1.20406 1.21020 1.19724 1.21449 0.93618 0.90046 1.52569 0.91543 1.19635 0.86644 0.91550 0.81427 1.86096 1.51524 1.57174 1.44346 1.22591 0.97551 0.95195 1.00061 1.21930 0.88308 0.96093 0.95493 1.47949 1.23238 1.09823 1.55487 1.15500 0.81908 0.81277 0.79544 1.90897 1.39662 1.63227 1.53667 1.45074 1.28963 1.05565 1.61495 1.21028 0.90230 0.89361 0.97278 1.20751 0.96267 0.94455 1.01199 1.20812 0.97286 0.99810 0.94836 1.21573 0.98421 0.94460 0.93762 1.21855 0.92789 1.00798 1.01800 1.21686 0.89687 0.97537 0.90543 1.98412 1.45740 1.79043 1.77387 1.67042 1.30266 1.12844 1.08501 1.22680 0.87290 0.92723 1.00378 1.23137 1.02571 0.75593 0.99520 0.91980 0.76896 0.90765 0.90441 0.93153 0.92659 0.77291 0.91553 0.91703 0.89627 0.89418 0.83485 0.83591 0.81524 0.89656 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.66 10.69 55.43 0.59 -23.06 16 2 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -13.78 8.27 -34.44 -0.28 -14.06 16 8 H 0.07 1.66 7.79 -52.48 -0.41 1.25 16 9 C 0.25 5.87 0.87 -89.62 -0.08 5.79 16 10 O -0.58 -14.57 13.16 -35.23 -0.46 -15.04 16 11 C -0.12 -2.20 6.13 -24.88 -0.15 -2.36 16 12 C 0.11 1.73 6.15 -3.06 -0.02 1.71 16 13 N -0.63 -12.62 3.33 -176.23 -0.59 -13.20 16 14 C 0.72 14.05 8.49 -86.92 -0.74 13.31 16 15 O -0.60 -14.24 16.60 5.29 0.09 -14.15 16 16 N -0.75 -10.24 5.52 -65.22 -0.36 -10.60 16 17 C 0.15 1.62 5.66 -4.04 -0.02 1.60 16 18 C -0.09 -0.60 5.48 -27.88 -0.15 -0.75 16 19 C -0.12 -0.94 5.15 -104.48 -0.54 -1.48 16 20 C -0.06 -0.38 9.86 -39.28 -0.39 -0.77 16 21 C -0.15 -1.13 9.88 -39.40 -0.39 -1.52 16 22 C 0.17 1.63 7.27 -17.44 -0.13 1.50 16 23 Cl -0.03 -0.31 29.11 -51.86 -1.51 -1.82 16 24 N -0.48 -5.10 10.34 -10.36 -0.11 -5.21 16 25 C 0.13 1.10 10.86 -17.55 -0.19 0.91 16 26 C 0.11 2.70 5.38 -2.53 -0.01 2.69 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.38 9.85 7.56 45.56 0.34 10.20 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.39 4.24 7.46 -40.82 -0.30 3.93 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 38 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.09 2.31 7.33 -51.93 -0.38 1.93 16 42 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -31.90 369.93 -9.92 -41.82 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -4.94 Total: 12.23 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -3.19 Total: 8.31 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.46 Total: -52.07 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.38 Total: -29.19 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.51 Total: -1.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.90 -9.92 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826698607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.119 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds